Literature DB >> 25348939

Targeted proteomics: a bridge between discovery and validation.

Robert Harlan1, Hui Zhang.   

Abstract

New technologies in mass spectrometry are beginning to mature and show unique advantages for the identification and quantitation of proteins. In recent years, one of the significant goals of clinical proteomics has been to identify biomarkers that can be used for clinical diagnosis. As technology has progressed, the list of potential biomarkers has grown. However, the verification and validation of these potential biomarkers is increasingly challenging and require high-throughput quantitative assays, targeting specific candidates. Targeted proteomics bridges the gap between biomarker discovery and the development of clinically applicable biomarker assays.

Entities:  

Keywords:  LC–MS; MRM; PRM; SRM; biomarker; proteomics; targeted proteomics

Mesh:

Substances:

Year:  2014        PMID: 25348939      PMCID: PMC4490831          DOI: 10.1586/14789450.2014.976558

Source DB:  PubMed          Journal:  Expert Rev Proteomics        ISSN: 1478-9450            Impact factor:   3.940


  67 in total

1.  The interface between biomarker discovery and clinical validation: The tar pit of the protein biomarker pipeline.

Authors:  Amanda G Paulovich; Jeffrey R Whiteaker; Andrew N Hoofnagle; Pei Wang
Journal:  Proteomics Clin Appl       Date:  2008-10-01       Impact factor: 3.494

2.  Platform for establishing interlaboratory reproducibility of selected reaction monitoring-based mass spectrometry peptide assays.

Authors:  A Prakash; T Rezai; B Krastins; D Sarracino; M Athanas; P Russo; M M Ross; H Zhang; Y Tian; V Kulasingam; A P Drabovich; C Smith; I Batruch; L Liotta; E Petricoin; E P Diamandis; D W Chan; M F Lopez
Journal:  J Proteome Res       Date:  2010-11-02       Impact factor: 4.466

Review 3.  Protein biomarker discovery and validation: the long and uncertain path to clinical utility.

Authors:  Nader Rifai; Michael A Gillette; Steven A Carr
Journal:  Nat Biotechnol       Date:  2006-08       Impact factor: 54.908

4.  Halogenated peptides as internal standards (H-PINS): introduction of an MS-based internal standard set for liquid chromatography-mass spectrometry.

Authors:  Hamid Mirzaei; Mi-Youn Brusniak; Lukas N Mueller; Simon Letarte; Julian D Watts; Ruedi Aebersold
Journal:  Mol Cell Proteomics       Date:  2009-05-01       Impact factor: 5.911

5.  Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma.

Authors:  Terri A Addona; Susan E Abbatiello; Birgit Schilling; Steven J Skates; D R Mani; David M Bunk; Clifford H Spiegelman; Lisa J Zimmerman; Amy-Joan L Ham; Hasmik Keshishian; Steven C Hall; Simon Allen; Ronald K Blackman; Christoph H Borchers; Charles Buck; Helene L Cardasis; Michael P Cusack; Nathan G Dodder; Bradford W Gibson; Jason M Held; Tara Hiltke; Angela Jackson; Eric B Johansen; Christopher R Kinsinger; Jing Li; Mehdi Mesri; Thomas A Neubert; Richard K Niles; Trenton C Pulsipher; David Ransohoff; Henry Rodriguez; Paul A Rudnick; Derek Smith; David L Tabb; Tony J Tegeler; Asokan M Variyath; Lorenzo J Vega-Montoto; Asa Wahlander; Sofia Waldemarson; Mu Wang; Jeffrey R Whiteaker; Lei Zhao; N Leigh Anderson; Susan J Fisher; Daniel C Liebler; Amanda G Paulovich; Fred E Regnier; Paul Tempst; Steven A Carr
Journal:  Nat Biotechnol       Date:  2009-06-28       Impact factor: 54.908

6.  An automated turbulent flow liquid chromatography-isotope dilution mass spectrometry (LC-IDMS) method for quantitation of serum creatinine.

Authors:  Robert Harlan; William Clarke; Joseph M Di Bussolo; Marta Kozak; Joely Straseski; Danni Li Meany
Journal:  Clin Chim Acta       Date:  2010-07-24       Impact factor: 3.786

7.  Solid phase extraction of N-linked glycopeptides using hydrazide tip.

Authors:  Jing Chen; Punit Shah; Hui Zhang
Journal:  Anal Chem       Date:  2013-10-30       Impact factor: 6.986

8.  Circulating tumor cells as markers for cancer risk assessment and treatment monitoring.

Authors:  Sabine Kasimir-Bauer
Journal:  Mol Diagn Ther       Date:  2009       Impact factor: 4.074

9.  High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites.

Authors:  Jianru Stahl-Zeng; Vinzenz Lange; Reto Ossola; Katrin Eckhardt; Wilhelm Krek; Ruedi Aebersold; Bruno Domon
Journal:  Mol Cell Proteomics       Date:  2007-07-20       Impact factor: 5.911

10.  Using iRT, a normalized retention time for more targeted measurement of peptides.

Authors:  Claudia Escher; Lukas Reiter; Brendan MacLean; Reto Ossola; Franz Herzog; John Chilton; Michael J MacCoss; Oliver Rinner
Journal:  Proteomics       Date:  2012-04       Impact factor: 3.984

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  11 in total

1.  Synthetic glycopeptides as a designated standard in focused glycoproteomics to discover serum cancer biomarkers.

Authors:  K V Yogesh; Toshiya Kamiyama; Chikara Ohyama; Tohru Yoneyama; Kazuhiro Nouso; Satoshi Kimura; Hiroshi Hinou; Shin-Ichiro Nishimura
Journal:  Medchemcomm       Date:  2018-06-29       Impact factor: 3.597

2.  Targeted proteomic assays for the verification of global proteomics insights.

Authors:  Stefani N Thomas; Hui Zhang
Journal:  Expert Rev Proteomics       Date:  2016-09-01       Impact factor: 3.940

Review 3.  Challenges of deciphering gastric cancer heterogeneity.

Authors:  Petra Hudler
Journal:  World J Gastroenterol       Date:  2015-10-07       Impact factor: 5.742

4.  Development of Parallel Reaction Monitoring Assays for the Detection of Aggressive Prostate Cancer Using Urinary Glycoproteins.

Authors:  Mingming Dong; Tung-Shing Mamie Lih; Naseruddin Höti; Shao-Yung Chen; Sean Ponce; Alan Partin; Hui Zhang
Journal:  J Proteome Res       Date:  2021-06-09       Impact factor: 4.466

Review 5.  The Role of Proteomics in Biomarker Development for Improved Patient Diagnosis and Clinical Decision Making in Prostate Cancer.

Authors:  Claire L Tonry; Emma Leacy; Cinzia Raso; Stephen P Finn; John Armstrong; Stephen R Pennington
Journal:  Diagnostics (Basel)       Date:  2016-07-18

6.  Nitric oxide mediated inhibition of antigen presentation from DCs to CD4+ T cells in cancer and measurement of STAT1 nitration.

Authors:  Joseph Markowitz; Jiang Wang; Zach Vangundy; Jia You; Vedat Yildiz; Lianbo Yu; Isaac P Foote; Owen E Branson; Andrew R Stiff; Taylor R Brooks; Brandon Biesiadecki; Thomas Olencki; Susheela Tridandapani; Michael A Freitas; Tracey Papenfuss; Mitch A Phelps; William E Carson
Journal:  Sci Rep       Date:  2017-11-13       Impact factor: 4.379

Review 7.  Urinary proteomics and metabolomics studies to monitor bladder health and urological diseases.

Authors:  Zhaohui Chen; Jayoung Kim
Journal:  BMC Urol       Date:  2016-03-22       Impact factor: 2.264

8.  Annexin-A1 and caldesmon are associated with resistance to tamoxifen in estrogen receptor positive recurrent breast cancer.

Authors:  Tommaso De Marchi; Anne M Timmermans; Marcel Smid; Maxime P Look; Christoph Stingl; Mark Opdam; Sabine C Linn; Fred C G J Sweep; Paul N Span; Mike Kliffen; Carolien H M van Deurzen; Theo M Luider; John A Foekens; John W Martens; Arzu Umar
Journal:  Oncotarget       Date:  2016-01-19

9.  Longitudinal quantification of the gingival crevicular fluid proteome during progression from gingivitis to periodontitis in a canine model.

Authors:  Ian J Davis; Andrew W Jones; Andrew J Creese; Ruth Staunton; Jujhar Atwal; Iain L C Chapple; Stephen Harris; Melissa M Grant
Journal:  J Clin Periodontol       Date:  2016-05-23       Impact factor: 8.728

Review 10.  Challenges and Opportunities in Clinical Applications of Blood-Based Proteomics in Cancer.

Authors:  Ruchika Bhawal; Ann L Oberg; Sheng Zhang; Manish Kohli
Journal:  Cancers (Basel)       Date:  2020-08-27       Impact factor: 6.639

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