Literature DB >> 25342537

Distribution and interaction patterns of bacterial communities in an ornithogenic soil of Seymour Island, Antarctica.

Pabulo Henrique Rampelotto1, Anthony Diego Muller Barboza, Antônio Batista Pereira, Eric W Triplett, Carlos Ernesto G R Schaefer, Flávio Anastácio de Oliveira Camargo, Luiz Fernando Wurdig Roesch.   

Abstract

Next-generation, culture-independent sequencing offers an excellent opportunity to examine network interactions among different microbial species. In this study, soil bacterial communities from a penguin rookery site at Seymour Island were analyzed for abundance, structure, diversity, and interaction networks to identify interaction patterns among the various taxa at three soil depths. The analysis revealed the presence of eight phyla distributed in different proportions among the surface layer (0-8 cm), middle layer (20-25 cm), and bottom (35-40 cm). The bottom layer presented the highest values of bacterial richness, diversity, and evenness when compared to surface and middle layers. The network analysis revealed the existence of a unique pattern of interactions in which the soil microbial network formed a clustered topology, rather than a modular structure as is usually found in biological communities. In addition, specific taxa were identified as important players in microbial community structure. Furthermore, simulation analyses indicated that the loss of potential keystone groups of microorganisms might alter the patterns of interactions within the microbial community. These findings provide new insights for assessing the consequences of environmental disturbances at the whole-community level in Antarctica.

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Year:  2014        PMID: 25342537     DOI: 10.1007/s00248-014-0510-6

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  25 in total

1.  Bacterial diversity in rhizosphere soil from Antarctic vascular plants of Admiralty Bay, maritime Antarctica.

Authors:  Lia C R S Teixeira; Raquel S Peixoto; Juliano C Cury; Woo Jun Sul; Vivian H Pellizari; James Tiedje; Alexandre S Rosado
Journal:  ISME J       Date:  2010-04-01       Impact factor: 10.302

2.  Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale.

Authors:  Christian L Lauber; Micah Hamady; Rob Knight; Noah Fierer
Journal:  Appl Environ Microbiol       Date:  2009-06-05       Impact factor: 4.792

3.  Bacterial diversity associated with ornithogenic soil of the Ross Sea region, Antarctica.

Authors:  J Aislabie; S Jordan; J Ayton; J L Klassen; G M Barker; S Turner
Journal:  Can J Microbiol       Date:  2009-01       Impact factor: 2.419

4.  Patterns of bacterial diversity across a range of Antarctic terrestrial habitats.

Authors:  Etienne Yergeau; Kevin K Newsham; David A Pearce; George A Kowalchuk
Journal:  Environ Microbiol       Date:  2007-11       Impact factor: 5.491

Review 5.  Microbial interactions: from networks to models.

Authors:  Karoline Faust; Jeroen Raes
Journal:  Nat Rev Microbiol       Date:  2012-07-16       Impact factor: 60.633

6.  Changes in diversity, abundance, and structure of soil bacterial communities in Brazilian Savanna under different land use systems.

Authors:  Pabulo Henrique Rampelotto; Adão de Siqueira Ferreira; Anthony Diego Muller Barboza; Luiz Fernando Wurdig Roesch
Journal:  Microb Ecol       Date:  2013-04-27       Impact factor: 4.552

7.  Ironing out the wrinkles in the rare biosphere through improved OTU clustering.

Authors:  Susan M Huse; David Mark Welch; Hilary G Morrison; Mitchell L Sogin
Journal:  Environ Microbiol       Date:  2010-03-11       Impact factor: 5.491

8.  Global response to desiccation stress in the soil actinomycete Rhodococcus jostii RHA1.

Authors:  Justin C LeBlanc; Edmilson R Gonçalves; William W Mohn
Journal:  Appl Environ Microbiol       Date:  2008-03-07       Impact factor: 4.792

9.  QIIME allows analysis of high-throughput community sequencing data.

Authors:  J Gregory Caporaso; Justin Kuczynski; Jesse Stombaugh; Kyle Bittinger; Frederic D Bushman; Elizabeth K Costello; Noah Fierer; Antonio Gonzalez Peña; Julia K Goodrich; Jeffrey I Gordon; Gavin A Huttley; Scott T Kelley; Dan Knights; Jeremy E Koenig; Ruth E Ley; Catherine A Lozupone; Daniel McDonald; Brian D Muegge; Meg Pirrung; Jens Reeder; Joel R Sevinsky; Peter J Turnbaugh; William A Walters; Jeremy Widmann; Tanya Yatsunenko; Jesse Zaneveld; Rob Knight
Journal:  Nat Methods       Date:  2010-04-11       Impact factor: 28.547

Review 10.  Antibacterial agents from actinomycetes - a review.

Authors:  Girish Badrinath Mahajan; Lakshmi Balachandran
Journal:  Front Biosci (Elite Ed)       Date:  2012-01-01
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  2 in total

1.  A Polyphasic Approach for Assessing Eco-System Connectivity Demonstrates that Perturbation Remodels Network Architecture in Soil Microcosms.

Authors:  G P Stamou; N Monokrousos; D Gwynn-Jones; D E Whitworth; E M Papatheodorou
Journal:  Microb Ecol       Date:  2019-04-05       Impact factor: 4.552

2.  Isolation of Uncultured Bacteria from Antarctica Using Long Incubation Periods and Low Nutritional Media.

Authors:  Andre A Pulschen; Amanda G Bendia; Ashwana D Fricker; Vivian H Pellizari; Douglas Galante; Fabio Rodrigues
Journal:  Front Microbiol       Date:  2017-07-14       Impact factor: 5.640

  2 in total

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