Literature DB >> 25333848

Architects of the genome: CHD dysfunction in cancer, developmental disorders and neurological syndromes.

Wangzhi Li1, Alea A Mills.   

Abstract

Chromatin is vital to normal cells, and its deregulation contributes to a spectrum of human ailments. An emerging concept is that aberrant chromatin regulation culminates in gene expression programs that set the stage for the seemingly diverse pathologies of cancer, developmental disorders and neurological syndromes. However, the mechanisms responsible for such common etiology have been elusive. Recent evidence has implicated lesions affecting chromatin-remodeling proteins in cancer, developmental disorders and neurological syndromes, suggesting a common source for these different pathologies. Here, we focus on the chromodomain helicase DNA binding chromatin-remodeling family and the recent evidence for its deregulation in diverse pathological conditions, providing a new perspective on the underlying mechanisms and their implications for these prevalent human diseases.

Entities:  

Keywords:  CHD proteins; DNA damage; cancer; chromatin remodeling; copy number variation; developmental disorders; male infertility; mutation; neurological syndromes

Mesh:

Substances:

Year:  2014        PMID: 25333848      PMCID: PMC4233650          DOI: 10.2217/epi.14.31

Source DB:  PubMed          Journal:  Epigenomics        ISSN: 1750-192X            Impact factor:   4.778


  147 in total

1.  Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2.

Authors:  Pedro V Peña; Foteini Davrazou; Xiaobing Shi; Kay L Walter; Vladislav V Verkhusha; Or Gozani; Rui Zhao; Tatiana G Kutateladze
Journal:  Nature       Date:  2006-05-21       Impact factor: 49.962

2.  CHD8 is an ATP-dependent chromatin remodeling factor that regulates beta-catenin target genes.

Authors:  Brandi A Thompson; Véronique Tremblay; Grace Lin; Daniel A Bochar
Journal:  Mol Cell Biol       Date:  2008-03-31       Impact factor: 4.272

3.  Functionally distinct Gata3/Chd4 complexes coordinately establish T helper 2 (Th2) cell identity.

Authors:  Hiroyuki Hosokawa; Tomoaki Tanaka; Yutaka Suzuki; Chiaki Iwamura; Shuichi Ohkubo; Kanji Endoh; Miki Kato; Yusuke Endo; Atsushi Onodera; Damon John Tumes; Akinori Kanai; Sumio Sugano; Toshinori Nakayama
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-07       Impact factor: 11.205

4.  Landscape of somatic single-nucleotide and copy-number mutations in uterine serous carcinoma.

Authors:  Siming Zhao; Murim Choi; John D Overton; Stefania Bellone; Dana M Roque; Emiliano Cocco; Federica Guzzo; Diana P English; Joyce Varughese; Sara Gasparrini; Ileana Bortolomai; Natalia Buza; Pei Hui; Maysa Abu-Khalaf; Antonella Ravaggi; Eliana Bignotti; Elisabetta Bandiera; Chiara Romani; Paola Todeschini; Renata Tassi; Laura Zanotti; Luisa Carrara; Sergio Pecorelli; Dan-Arin Silasi; Elena Ratner; Masoud Azodi; Peter E Schwartz; Thomas J Rutherford; Amy L Stiegler; Shrikant Mane; Titus J Boggon; Joseph Schlessinger; Richard P Lifton; Alessandro D Santin
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-28       Impact factor: 11.205

5.  The genomic complexity of primary human prostate cancer.

Authors:  Michael F Berger; Michael S Lawrence; Francesca Demichelis; Yotam Drier; Kristian Cibulskis; Andrey Y Sivachenko; Andrea Sboner; Raquel Esgueva; Dorothee Pflueger; Carrie Sougnez; Robert Onofrio; Scott L Carter; Kyung Park; Lukas Habegger; Lauren Ambrogio; Timothy Fennell; Melissa Parkin; Gordon Saksena; Douglas Voet; Alex H Ramos; Trevor J Pugh; Jane Wilkinson; Sheila Fisher; Wendy Winckler; Scott Mahan; Kristin Ardlie; Jennifer Baldwin; Jonathan W Simons; Naoki Kitabayashi; Theresa Y MacDonald; Philip W Kantoff; Lynda Chin; Stacey B Gabriel; Mark B Gerstein; Todd R Golub; Matthew Meyerson; Ashutosh Tewari; Eric S Lander; Gad Getz; Mark A Rubin; Levi A Garraway
Journal:  Nature       Date:  2011-02-10       Impact factor: 49.962

Review 6.  Handpicking epigenetic marks with PHD fingers.

Authors:  Catherine A Musselman; Tatiana G Kutateladze
Journal:  Nucleic Acids Res       Date:  2011-08-03       Impact factor: 16.971

7.  Silencing of CHD5 gene by promoter methylation in leukemia.

Authors:  Rui Zhao; Fanyi Meng; Nisha Wang; Wenli Ma; Qitao Yan
Journal:  PLoS One       Date:  2014-01-13       Impact factor: 3.240

8.  Convergence of genes and cellular pathways dysregulated in autism spectrum disorders.

Authors:  Dalila Pinto; Elsa Delaby; Daniele Merico; Mafalda Barbosa; Alison Merikangas; Lambertus Klei; Bhooma Thiruvahindrapuram; Xiao Xu; Robert Ziman; Zhuozhi Wang; Jacob A S Vorstman; Ann Thompson; Regina Regan; Marion Pilorge; Giovanna Pellecchia; Alistair T Pagnamenta; Bárbara Oliveira; Christian R Marshall; Tiago R Magalhaes; Jennifer K Lowe; Jennifer L Howe; Anthony J Griswold; John Gilbert; Eftichia Duketis; Beth A Dombroski; Maretha V De Jonge; Michael Cuccaro; Emily L Crawford; Catarina T Correia; Judith Conroy; Inês C Conceição; Andreas G Chiocchetti; Jillian P Casey; Guiqing Cai; Christelle Cabrol; Nadia Bolshakova; Elena Bacchelli; Richard Anney; Steven Gallinger; Michelle Cotterchio; Graham Casey; Lonnie Zwaigenbaum; Kerstin Wittemeyer; Kirsty Wing; Simon Wallace; Herman van Engeland; Ana Tryfon; Susanne Thomson; Latha Soorya; Bernadette Rogé; Wendy Roberts; Fritz Poustka; Susana Mouga; Nancy Minshew; L Alison McInnes; Susan G McGrew; Catherine Lord; Marion Leboyer; Ann S Le Couteur; Alexander Kolevzon; Patricia Jiménez González; Suma Jacob; Richard Holt; Stephen Guter; Jonathan Green; Andrew Green; Christopher Gillberg; Bridget A Fernandez; Frederico Duque; Richard Delorme; Geraldine Dawson; Pauline Chaste; Cátia Café; Sean Brennan; Thomas Bourgeron; Patrick F Bolton; Sven Bölte; Raphael Bernier; Gillian Baird; Anthony J Bailey; Evdokia Anagnostou; Joana Almeida; Ellen M Wijsman; Veronica J Vieland; Astrid M Vicente; Gerard D Schellenberg; Margaret Pericak-Vance; Andrew D Paterson; Jeremy R Parr; Guiomar Oliveira; John I Nurnberger; Anthony P Monaco; Elena Maestrini; Sabine M Klauck; Hakon Hakonarson; Jonathan L Haines; Daniel H Geschwind; Christine M Freitag; Susan E Folstein; Sean Ennis; Hilary Coon; Agatino Battaglia; Peter Szatmari; James S Sutcliffe; Joachim Hallmayer; Michael Gill; Edwin H Cook; Joseph D Buxbaum; Bernie Devlin; Louise Gallagher; Catalina Betancur; Stephen W Scherer
Journal:  Am J Hum Genet       Date:  2014-04-24       Impact factor: 11.025

9.  Role of chromodomain helicase DNA-binding protein 2 in DNA damage response signaling and tumorigenesis.

Authors:  P Nagarajan; T M Onami; S Rajagopalan; S Kania; R Donnell; S Venkatachalam
Journal:  Oncogene       Date:  2009-01-12       Impact factor: 9.867

10.  De novo mutations in epileptic encephalopathies.

Authors:  Andrew S Allen; Samuel F Berkovic; Patrick Cossette; Norman Delanty; Dennis Dlugos; Evan E Eichler; Michael P Epstein; Tracy Glauser; David B Goldstein; Yujun Han; Erin L Heinzen; Yuki Hitomi; Katherine B Howell; Michael R Johnson; Ruben Kuzniecky; Daniel H Lowenstein; Yi-Fan Lu; Maura R Z Madou; Anthony G Marson; Heather C Mefford; Sahar Esmaeeli Nieh; Terence J O'Brien; Ruth Ottman; Slavé Petrovski; Annapurna Poduri; Elizabeth K Ruzzo; Ingrid E Scheffer; Elliott H Sherr; Christopher J Yuskaitis; Bassel Abou-Khalil; Brian K Alldredge; Jocelyn F Bautista; Samuel F Berkovic; Alex Boro; Gregory D Cascino; Damian Consalvo; Patricia Crumrine; Orrin Devinsky; Dennis Dlugos; Michael P Epstein; Miguel Fiol; Nathan B Fountain; Jacqueline French; Daniel Friedman; Eric B Geller; Tracy Glauser; Simon Glynn; Sheryl R Haut; Jean Hayward; Sandra L Helmers; Sucheta Joshi; Andres Kanner; Heidi E Kirsch; Robert C Knowlton; Eric H Kossoff; Rachel Kuperman; Ruben Kuzniecky; Daniel H Lowenstein; Shannon M McGuire; Paul V Motika; Edward J Novotny; Ruth Ottman; Juliann M Paolicchi; Jack M Parent; Kristen Park; Annapurna Poduri; Ingrid E Scheffer; Renée A Shellhaas; Elliott H Sherr; Jerry J Shih; Rani Singh; Joseph Sirven; Michael C Smith; Joseph Sullivan; Liu Lin Thio; Anu Venkat; Eileen P G Vining; Gretchen K Von Allmen; Judith L Weisenberg; Peter Widdess-Walsh; Melodie R Winawer
Journal:  Nature       Date:  2013-08-11       Impact factor: 49.962

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  21 in total

Review 1.  Chromodomain helicase DNA-binding proteins in stem cells and human developmental diseases.

Authors:  Joseph A Micucci; Ethan D Sperry; Donna M Martin
Journal:  Stem Cells Dev       Date:  2015-02-25       Impact factor: 3.272

2.  Regulation of embryonic and adult neurogenesis by Ars2.

Authors:  Yang Yu; Celia Andreu-Agullo; Bing Fang Liu; Luendreo Barboza; Miklos Toth; Eric C Lai
Journal:  Development       Date:  2020-01-22       Impact factor: 6.868

Review 3.  Marked for death: targeting epigenetic changes in cancer.

Authors:  Sophia Xiao Pfister; Alan Ashworth
Journal:  Nat Rev Drug Discov       Date:  2017-03-10       Impact factor: 84.694

4.  Mechanism studies of the activation of DNA methyltransferase DNMT1 triggered by histone H3 ubiquitination, revealed by multi-scale molecular dynamics simulations.

Authors:  Jixue Sun; Fei Liu; Longxiao Yuan; Ning-Ning Pang; Bing Zhu; Na Yang
Journal:  Sci China Life Sci       Date:  2022-10-20       Impact factor: 10.372

5.  High CHD9 expression is associated with poor prognosis in clear cell renal cell carcinoma.

Authors:  Bo Guan; Xian-Gui Ran; Yong-Qiang Du; Feng Ren; Ye Tian; Ying Wang; Ming-Min Chen
Journal:  Int J Clin Exp Pathol       Date:  2018-07-01

6.  Covalent Modifications of Histone H3K9 Promote Binding of CHD3.

Authors:  Adam H Tencer; Khan L Cox; Luo Di; Joseph B Bridgers; Jie Lyu; Xiaodong Wang; Jennifer K Sims; Tyler M Weaver; Hillary F Allen; Yi Zhang; Jovylyn Gatchalian; Michael A Darcy; Matthew D Gibson; Jinzen Ikebe; Wei Li; Paul A Wade; Jeffrey J Hayes; Brian D Strahl; Hidetoshi Kono; Michael G Poirier; Catherine A Musselman; Tatiana G Kutateladze
Journal:  Cell Rep       Date:  2017-10-10       Impact factor: 9.423

7.  Unique evolutionary trajectories of breast cancers with distinct genomic and spatial heterogeneity.

Authors:  Tanya N Phung; Timothy H Webster; Elizabeth Lenkiewicz; Smriti Malasi; Mariacarla Andreozzi; Ann E McCullough; Karen S Anderson; Barbara A Pockaj; Melissa A Wilson; Michael T Barrett
Journal:  Sci Rep       Date:  2021-05-19       Impact factor: 4.379

8.  In silico molecular cytogenetics: a bioinformatic approach to prioritization of candidate genes and copy number variations for basic and clinical genome research.

Authors:  Ivan Y Iourov; Svetlana G Vorsanova; Yuri B Yurov
Journal:  Mol Cytogenet       Date:  2014-12-09       Impact factor: 2.009

9.  Next-generation gene panel testing in adolescents and adults in a medical neuropsychiatric genetics clinic.

Authors:  Y Trakadis; A Accogli; B Qi; D Bloom; R Joober; E Levy; K Tabbane
Journal:  Neurogenetics       Date:  2021-08-07       Impact factor: 2.660

10.  Germline IKAROS dimerization haploinsufficiency causes hematologic cytopenias and malignancies.

Authors:  Hye Sun Kuehn; Julie E Niemela; Jennifer Stoddard; Sara Ciullini Mannurita; Tala Shahin; Shubham Goel; Mary Hintermeyer; Raul Jimenez Heredia; Mary Garofalo; Laura Lucas; Smriti Singh; Annalisa Tondo; Zachary Jacobs; William A Gahl; Sylvain Latour; James Verbsky; John Routes; Charlotte Cunningham-Rundles; Kaan Boztug; Eleonora Gambineri; Thomas A Fleisher; Shanmuganathan Chandrakasan; Sergio D Rosenzweig
Journal:  Blood       Date:  2021-01-21       Impact factor: 25.476

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