Density functional theory (DFT) calculations with B3LYP and M06 functionals elucidated the reactivities of alkynes and Z/E selectivity of cyclodecatriene products in the Ni-catalyzed [4 + 4 + 2] cycloadditions of dienes and alkynes. The Ni-mediated oxidative cyclization of butadienes determines the Z/E selectivity. Only the oxidative cyclization of one s-cis to one s-trans butadiene is facile and exergonic, leading to the observed 1Z,4Z,8E-cyclodecatriene product. The same step with two s-cis or s-trans butadienes is either kinetically or thermodynamically unfavorable, and the 1Z,4E,8E- and 1Z,4Z,8Z-cyclodecatriene isomers are not observed in experiments. In addition, the competition between the desired cooligomerization and [2 + 2 + 2] cycloadditions of alkynes depends on the coordination of alkynes. With either electron-deficient alkynes or alkynes with free hydroxyl groups, the coordination of alkynes is stronger than that of dienes, and alkyne trimerization prevails. With alkyl-substituted alkynes, the generation of alkyne-coordinated nickel complex is much less favorable, and the [4 + 4 + 2] cycloaddition occurs.
Density functional theory (DFT) calculations with B3LYP and M06 functionals elucidated the reactivities of alkynes and Z/E selectivity of cyclodecatriene products in the Ni-catalyzed [4 + 4 + 2] cycloadditions of dienes and alkynes. The Ni-mediated oxidative cyclization of butadienes determines the Z/E selectivity. Only the oxidative cyclization of one s-cis to one s-trans butadiene is facile and exergonic, leading to the observed 1Z,4Z,8E-cyclodecatriene product. The same step with two s-cis or s-trans butadienes is either kinetically or thermodynamically unfavorable, and the 1Z,4E,8E- and 1Z,4Z,8Z-cyclodecatriene isomers are not observed in experiments. In addition, the competition between the desired cooligomerization and [2 + 2 + 2] cycloadditions of alkynes depends on the coordination of alkynes. With either electron-deficient alkynes or alkynes with free hydroxyl groups, the coordination of alkynes is stronger than that of dienes, and alkyne trimerization prevails. With alkyl-substituted alkynes, the generation of alkyne-coordinated nickel complex is much less favorable, and the [4 + 4 + 2] cycloaddition occurs.
As an ubiquitous and
important family of molecules, terpenes, provide
flavors, fragrances, medicines, and commercial products.[1] Although terpenes possess a seemingly endless
variety of architectural complexities, nature is able to utilize simple
five-carbon moieties to build the tens of thousands of different members
of the terpene family.[2] The biosynthesis
of terpenes often occurs in a unified fashion as a “two-phase”
process:[3] (1) in the “cyclase”
phase, small linear hydrocarbon phosphate building blocks are coupled
together, followed by both enzymatic and nonenzymatic cyclizations
and rearrangements; (2) in the “oxidase” phase, the
oxidations of alkenes and carbon–hydrogen bonds result in large
structural diversity.Inspired by the early work on Ni-catalyzed
diene oligomerizations
from Wilke,[4] Heimbach,[5] and others,[6] the Baran group
proposed a Ni-catalyzed diene/alkyne cooligomerization that could
mimic Nature’s cyclase approach to terpenes (Scheme 1).[7] From the nickel–butadiene
complex 1, the oxidative cyclization of dienes gives
the nine-membered ring intermediate 2. This intermediate, 2, undergoes alkyne insertion to produce the 11-membered ring
intermediate 5. Subsequent reductive elimination generates
the desired 10-membered ring product 6.
Extensive experimental explorations of ligand, substrate,
and other
conditions led to successive butadiene/alkyne cooligomerizations with
intriguing reactivities and selectivities:[7] (i) only the 1Z,4Z,8E-cyclodecatriene is generated, while the 1Z,4E,8E- and 1Z,4Z,8Z-isomers are not observed (Scheme 2a); (ii) the [2 + 2 + 2] cycloadditions of alkynes
are competitive with electron-deficient alkynes or alkynes with free
hydroxyl group (Scheme 2b, 2c).[8] In order to contribute to
the future development of this methodology,[9] we explored the mechanism, reactivities, and selectivities of the
Ni-catalyzed diene/alkyne cooligomerization with density functional
theory (DFT) calculations.[10]
Scheme 2
Selected
Examples of Ni-Catalyzed Butadiene/Alkyne Cooligomerization
and Competitive [2 + 2 + 2] Cycloadditions of Alkynes
Computational Details
Geometry optimizations, vibrational frequencies, and thermal energy
corrections were performed with the B3LYP functional, and a 6-31G(d)
basis set for all main group elements and SDD basis set for nickel,
as implemented in Gaussian 09.[11] Energies
were evaluated with the M06 method[12] and
a 6-311+G(2d,p) basis set for all main group elements and SDD basis
set for nickel. All reported free energies involve zero-point vibrational
energy corrections and thermal corrections to Gibbs free energy at
298 K.[13] Extensive conformational searches
have been conducted to make sure that the most stable conformers are
located, and only the most stable conformers are discussed in this
work.
Results and Discussion
Mechanism of Butadiene/Alkyne
Cooligomerization
The mechanism of Ni-catalyzed diene/alkyne
cooligomerization of
butadiene and 2-butyne as the model substrates and PMe3 as the model ligand was first explored.[14] The calculated free energy profile of the productive pathway is
shown in Figure 1, and optimized structures
of selected intermediates and transition states are shown in Figure 2. From the [(PMe3)Ni(butadiene)2] complex 15, the facile oxidative cyclization of one s-cis and one s-trans butadiene via TS16 generates the nine-membered ring intermediate 17 (see later text for discussions on Z/E selectivity).[15] The coordination of 2-butyne
produces the unstable tetracoordinate intermediate 18, and the subsequent alkyne insertion via TS19 is very
unfavorable with a 45.4 kcal/mol overall barrier with respect to the
intermediate 17. Alternatively, a ligand exchange between
2-butyne and PMe3 occurs to produce the intermediate 20.[16] Despite the endergonic ligand
exchange, the alkyne insertion via TS21 only requires
a 25.5 kcal/mol barrier with respect to 17, generating
the 11-membered ring intermediate 22. From 22, the reductive elimination through TS23 is unfavorable
with a barrier of 31.2 kcal/mol. The alternative reductive elimination
with PMe3 coordination via TS25 is much more
favorable, producing the cyclodecatriene-coordinated nickel complex 26, and the product liberation regenerates the butadiene–nickel
complex 15. Therefore, the rate-determining step of the
catalytic cycle is the alkyne insertion and the overall reaction barrier
is 25.5 kcal/mol from the resting state 17 to the alkyne
insertion transition state TS21. In addition, the ligand
dissociation and recoordination are essential in this reaction. The
phosphine ligand dissociates first in order to undergo a facile alkyne
insertion via TS21 and recoordinates to facilitate the
reductive elimination through TS25.
Figure 1
Gibbs free energy profile
of [Ni(PMe3)]-catalyzed butadiene/2-butyne
cooligomerization (energies computed at the level of M06/6-311+G(2d,p),SDD//B3LYP/6-31G(d),SDD).
Figure 2
Optimized structures of selected intermediates
and transition states
of [Ni(PMe3)]-catalyzed butadiene/2-butyne cooligomerization.
Gibbs free energy profile
of [Ni(PMe3)]-catalyzed butadiene/2-butyne
cooligomerization (energies computed at the level of M06/6-311+G(2d,p),SDD//B3LYP/6-31G(d),SDD).Optimized structures of selected intermediates
and transition states
of [Ni(PMe3)]-catalyzed butadiene/2-butyne cooligomerization.
Origins
of Z/E Selectivity
Based
on the productive pathway with one s-cis and one s-trans butadienes, we studied
the Z/E selectivity of cyclodecatriene
products when two s-cis or s-trans butadienes undergo the same cooligomerization with 2-butyne. The
reaction with one s-cis and one s-trans butadiene produces the observed 1Z,4Z,8E-cyclodecatriene, and the other two pathways
generate the Z/E isomers. The computed
free energy profiles are shown in Figure 3.
The first step of the catalytic cycle, Ni-mediated oxidative cyclization
of butadienes, determines the Z/E selectivity. The oxidative cyclization with two s-cis butadienes (via TS16-cc) requires a 25.7 kcal/mol barrier,
making this pathway unfavorable. In addition, the same cyclization
with two s-trans butadienes is very endergonic, generating
the unstable nine-membered ring intermediate 17-tt. This
leads to the 34.6 kcal/mol overall barrier for the subsequent alkyne
insertion, making the reaction with two s-trans butadienes
unfavorable. Only the oxidative cyclization with one s-cis and one s-trans butadienes is facile and exergonic,
leading to a productive pathway.
Figure 3
Gibbs
free energy profiles of [Ni(PMe3)]-catalyzed cooligomerization
involving s-cis and s-trans butadienes
and 2-butyne (Gibbs free energies in kcal/mol).
Figure 4 shows the optimized structures and relative free energies of the
transition states and nine-membered ring intermediates of the Ni-mediated
oxidative cyclization step.[17] Comparing
the transition states, TS16-cc is at least 10.1 kcal/mol
less stable than the others. This results from the weak coordination
of the dienes in TS16-cc. In order to form the terminal
C–C bond in the oxidative cyclization, one of the coordinating
double bonds of dienes in TS16-cc is distorted to be
perpendicular to the Ni1–C2–P10 plane (highlighted in green in TS16-cc of Figure 4). This distortion significantly weakens the coordination
of this double bond and destabilizes the transition state.[18] In contrast, when the oxidative cyclization
occurs with s-trans butadienes, TS16 and TS16-tt maintain the planar coordination of both
dienes and are much more stable than TS16-cc, leading
to the achievable barriers. Comparing the generated nine-membered
ring intermediates, 17-tt is much less stable than 17 and 17-cc. Because of the two trans-double
bonds in the nine-membered ring of 17-tt, this complex
cannot maintain the η3 coordination as in the other
two intermediates. This makes 17-tt much less stable
than 17 and 17-cc. Therefore, only the oxidative
cyclization with one s-cis and one s-trans butadienes is facile and exergonic, leading to the productive pathway.
Figure 4
Optimized structures and relative free energies (transition states
are compared to TS16, and intermediates are compared
to 17) of transition states and generated intermediates
of [Ni(PMe3)]-mediated oxidative cyclization of s-cis and s-trans butadienes.
Gibbs
free energy profiles of [Ni(PMe3)]-catalyzed cooligomerization
involving s-cis and s-trans butadienes
and 2-butyne (Gibbs free energies in kcal/mol).Optimized structures and relative free energies (transition states
are compared to TS16, and intermediates are compared
to 17) of transition states and generated intermediates
of [Ni(PMe3)]-mediated oxidative cyclization of s-cis and s-trans butadienes.
Competition with Alkyne Trimerization
We also studied the competing [2 + 2 + 2] cycloadditions of alkynes,
using 2-butyne as the model substrate.[19,20] The free energies
for the most favorable pathway are shown in Figure 5. From the nickel–diene complex 15, the
endergonic ligand exchange of alkynes generates the intermediate 27. The oxidative cyclization of 2-butynes via TS28 involves a 27.7 kcal/mol overall barrier with respect to 15, producing the nickellacyclopentadiene intermediate 29. From 29, the coordination of 2-butyne and subsequent
insertion through TS31 are facile, generating the intermediate 32. The reductive elimination via TS33 only requires
a barrier of 9.1 kcal/mol and produces the aryl ring-coordinated complex 34. Therefore, the rate-limiting step of the [2 + 2 + 2] cycloaddition
is the oxidative cyclization, and this trimerization of 2-butyne requires
a 27.7 kcal/mol overall barrier, which is much less favorable than
the [4 + 4 + 2] cycloaddition of butadienes and 2-butyne.
Figure 5
Free energy
changes of the most favorable pathway of [Ni(PMe3)]-catalyzed
[2 + 2 + 2] cycloaddition of 2-butynes.
Free energy
changes of the most favorable pathway of [Ni(PMe3)]-catalyzed
[2 + 2 + 2] cycloaddition of 2-butynes.We studied the same trimerization reaction with electron-deficient
alkyne (using dimethyl acetylene dicarboxylate as example) and alkyne
with free hydroxyl group (using 2-methyl-3-butyn-2-ol as example),
and the free energy changes are shown in Figure 6. The ligand exchange between alkynes and butadienes determines the
competition between the [4 + 4 + 2] and [2 + 2 + 2] cycloadditions.
With 2-butyne, the ligand exchange between alkynes and butadienes
is endergonic by 8.4 kcal/mol, making the subsequent oxidative cyclization
of alkynes much less favorable as compared to the cooligomerization
pathway with butadiene (Figure 1). In contrast,
the same step is exergonic by 18.4 kcal/mol with dimethyl acetylene
dicarboxylate and exergonic by 9.3 kcal/mol with 2-methyl-3-butyn-2-ol.
These exergonic coordinations of alkynes make the [2 + 2 + 2] cycloadditions
competitive, leading to the benzene derivatives, as found in the experiments.
Figure 6
Gibbs free energy profiles of [Ni(PMe3)]-catalyzed [2
+ 2 + 2] cycloadditions with 2-butyne, dimethyl acetylene dicarboxylate,
and 2-methyl-3-butyn-2-ol.
Figure 7 shows the optimized structures
of the alkyne-coordinated complexes, 27, 27b, and 27c. Electron-deficient alkynes, such as dimethyl
acetylene dicarboxylate in 27b, have much stronger coordination
to electron-rich nickel(0) as compared to 2-butyne. This strong coordination
of electron-deficient alkynes makes the substrate exchange from 16b to 27b exergonic, leading to the favorable
alkyne trimerization. In addition, when the alkyne has free hydroxyl
group, there is an intramolecular hydrogen bond that stabilizes the
complex 27c. This makes the formation of 27c favorable, also leading to the productive [2 + 2 + 2] cycloadditions.
Therefore, when electron-deficient alkynes, or alkynes with a free
hydroxyl group are used, the alkyne coordination of nickel is stronger
than the diene coordination. This favorable coordination alters the
energetics such that the [2 + 2 + 2] trimerization of alkynes competes
with the [4 + 4 + 2] reaction.
Figure 7
Optimized structures of [(PMe3)Ni(alkyne)2]
complexes, 27 for 2-butyne, 27b for dimethyl
acetylene dicarboxylate, and 27c for 2-methyl-3-butyn-2-ol
(only the α-carbons of the ester groups in 27b are
shown for simplicity).
Gibbs free energy profiles of [Ni(PMe3)]-catalyzed [2
+ 2 + 2] cycloadditions with 2-butyne, dimethyl acetylene dicarboxylate,
and 2-methyl-3-butyn-2-ol.Optimized structures of [(PMe3)Ni(alkyne)2]
complexes, 27 for 2-butyne, 27b for dimethyl
acetylene dicarboxylate, and 27c for 2-methyl-3-butyn-2-ol
(only the α-carbons of the ester groups in 27b are
shown for simplicity).
Conclusions
We have studied the mechanism, reactivities,
and selectivities
of Ni-catalyzed [4 + 4 + 2] cycloadditions of dienes and alkynes through
density functional theory (DFT) calculations. The reaction is found
to proceed through the oxidative cyclization of dienes to form the
nickel–phosphine complex. This nine-membered ring intermediate
dissociates the phosphine ligand and then undergoes rate-determining
alkyne insertion, affording the 11-membered ring intermediate. In
order to undergo a facile reductive elimination, the phosphine ligand
recoordinates to nickel and facilitates the formation of 1Z,4Z,8E-cyclodecatriene
products.We found that the Z/E selectivity
of the cyclodecatriene products is determined by the diene oxidative
cyclization step. Only the oxidative cyclization between one s-cis and one s-trans butadiene is facile
and exergonic. The step with two s-cis butadienes
requires much higher barrier due to the weak coordination of dienes,
and the step with two s-trans butadienes generates
high energy nine-membered ring intermediates. Therefore, the oxidative
cyclization with two s-cis or s-trans butadienes are both much less favorable than the reaction with one s-cis and one s-trans butadienes either
kinetically or thermodynamically, resulting in the 1Z,4Z,8E-cyclodecatriene products.We also investigated the competing [2 + 2 + 2] cycloaddition of
alkynes with [Ni(PMe3)] as the same active catalyst and
found that the alkyne coordination determines the feasibility of the
trimerization of alkynes. With electron-deficient alkynes or alkynes
with free hydroxyl groups, the coordination of alkynes is much stronger
as compared to the coordination of dienes, and the side reaction prevails.
In contrast, the alkyl-substituted alkynes coordinate more weakly,
and the generation of alkyne-coordinated nickel complex is less favorable.
In these cases, the [4 + 4 + 2] cycloaddition of dienes and alkynes
occurs.
Authors: Steven J McKerrall; Lars Jørgensen; Christian A Kuttruff; Felix Ungeheuer; Phil S Baran Journal: J Am Chem Soc Date: 2014-04-08 Impact factor: 15.419