| Literature DB >> 25313938 |
Shuyuan Li1, Bin Hu1, Yi Wang1, Di Wu2, Li Jin1, Xiaofeng Wang1.
Abstract
OBJECTIVE: Single nucleotide polymorphisms (SNPs) in apolipoprotein A5 (APOA5) gene are associated with triglyceride (TG) levels. However, the minor allele frequencies and linkage disequilibriums (LDs) of the SNPs in addition to their effects on TG levels vary greatly between Caucasians and East Asians. The distributions of the SNPs/haplotypes and their associations with TG levels in Uyghur population, an admixture population of Caucasians and East Asians, have not been reported to date. Here, we performed a cross-sectional study to address these.Entities:
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Year: 2014 PMID: 25313938 PMCID: PMC4196964 DOI: 10.1371/journal.pone.0110258
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Clinical characteristics of the studied subjects.
| Total | |
| N | 1174 |
| Age (year) | 51.5±11.2 |
| Men (%) | 404 (34.5) |
| BMI (kg/m2) | 26.6±4.57 |
| Waist (cm) | 88.3±11.4 |
| Ever smoker (%) | 163 (14.7) |
| Ever drinker (%) | 63 (5.8) |
| SBP (mm Hg) | 137.6±27.7 |
| DBP (mm Hg) | 83.8±15.0 |
| TC (mmol/L) | 4.54±1.04 |
| TG (mmol/L) | 1.56±1.10 |
| Glu (mmol/L) | 5.74±1.78 |
Values shown are numbers (frequencies) for categorical variables and mean ± standard deviation for continuous variables.
calculated by dividing weight (kg) by height squared (m2).
Association between the SNPs in APOA5 and plasma TG levels in the general Uyghur population.
| SNPs | Genotype | N (%) | TG |
|
|
| rs662799 | TT | 762 (65.4) | 1.46±0.93 | 3.99×10−7 | 4.38×10−8 |
| CT | 363 (31.1) | 1.69±1.25 | |||
| CC | 41 (3.5) | 2.37±2.03 | |||
| rs3135506 | GG | 1091 (93.3) | 1.54±1.07 | 0.027 | 0.041 |
| GC/CC | 78 (6.7) | 1.82±1.46 | |||
| rs2075291 | GG | 1089 (93.7) | 1.53±1.05 | 0.017 | 0.027 |
| GT | 73 (6.3) | 1.94±1.68 | |||
| rs2266788 | TT | 827 (71.2) | 1.51±1.02 | 7.01×10−5 | 3.24×10−6 |
| CT | 299 (25.8) | 1.63±1.17 | |||
| CC | 35 (3.0) | 2.41±2.01 |
*unadjusted P value.
adjusted for age, gender, BMI, smoking, and drinking.
Bold fonts represent significant difference after multiple correction (P<0.0125).
Association between the haplotypes in APOA5 and plasma TG levels in the general Uyghur population.
| Haplotypes | Freq (%) | TG |
|
|
| TGGT | 77.1 | 1.49±0.98 | ||
| CGGC | 15.4 | 1.79±1.42 | 3.17×10−6 | 2.35×10−7 |
| TCGT | 3.5 | 1.84±1.48 | 0.005 | 0.011 |
| CGTT | 3.2 | 1.94±1.70 | 0.006 | 0.010 |
The four SNPs in the haplotypes were arranged in the order of 5′ to 3′, i.e., rs662799, rs3135506, rs2075291, and rs2266788.
*unadjusted P value.
adjusted for age, gender, BMI, smoking, and drinking.
Bold fonts represent significant difference after multiple correction (P<0.0125).
Figure 1Haploview LD graph of the studied polymorphisms of APOA5 in general Uyghur population.
Pairwise linkage disequilibrium is expressed as D’ (different colors) and r 2 (numbers).
Figure 2The minor allele frequencies (MAFs) of the polymorphisms in APOA5 in the different populations.
Based on the online databases and literatures in addition to our own data.
Figure 3The frequencies of the haplotypes derived from the four SNPs in APOA5 in different populations.
Based on the online databases and literatures in addition to our own data.
Figure 4Mean effects and standard errors (bars) in TG levels for each SNP and haplotype.