Literature DB >> 25313349

Multiscale Models of Antibiotic Probiotics.

Yiannis N Kaznessis1.   

Abstract

The discovery of antibiotics is one of the most important advances in the history of humankind. For eighty years human life expectancy and standards of living improved greatly thanks to antibiotics. But bacteria have been fighting back, developing resistance to our most potent molecules. New, alternative strategies must be explored as antibiotic therapies become obsolete because of bacterial resistance. Mathematical models and simulations guide the development of complex technologies, such as aircrafts, bridges, communication systems and transportation systems. Herein, models are discussed that guide the development of new antibiotic technologies. These models span multiple molecular and cellular scales, and facilitate the development of a technology that addresses a significant societal challenge. We argue that simulations can be a creative source of knowledge.

Entities:  

Keywords:  Antimicrobial Peptides; Multiscale Models; Synthetic Biology

Year:  2014        PMID: 25313349      PMCID: PMC4192654          DOI: 10.1016/j.coche.2014.08.002

Source DB:  PubMed          Journal:  Curr Opin Chem Eng        ISSN: 2211-3398            Impact factor:   5.163


  37 in total

1.  Binomial leap methods for simulating stochastic chemical kinetics.

Authors:  Tianhai Tian; Kevin Burrage
Journal:  J Chem Phys       Date:  2004-12-01       Impact factor: 3.488

2.  Nested stochastic simulation algorithm for chemical kinetic systems with disparate rates.

Authors:  Weinan E; Di Liu; Eric Vanden-Eijnden
Journal:  J Chem Phys       Date:  2005-11-15       Impact factor: 3.488

3.  The finite state projection algorithm for the solution of the chemical master equation.

Authors:  Brian Munsky; Mustafa Khammash
Journal:  J Chem Phys       Date:  2006-01-28       Impact factor: 3.488

Review 4.  Engineering microbial consortia: a new frontier in synthetic biology.

Authors:  Katie Brenner; Lingchong You; Frances H Arnold
Journal:  Trends Biotechnol       Date:  2008-07-31       Impact factor: 19.536

5.  Environmental microbiology: plant bacteria thrive in storm clouds.

Authors:  Christina Tobin Kåhrström
Journal:  Nat Rev Microbiol       Date:  2013-03       Impact factor: 60.633

6.  Vancomycin-resistant enterococci.

Authors:  A H Uttley; C H Collins; J Naidoo; R C George
Journal:  Lancet       Date:  1988 Jan 2-9       Impact factor: 79.321

7.  Free energy profile of the interaction between a monomer or a dimer of protegrin-1 in a specific binding orientation and a model lipid bilayer.

Authors:  Victor Vivcharuk; Yiannis Kaznessis
Journal:  J Phys Chem B       Date:  2010-03-04       Impact factor: 2.991

8.  Stochastic simulations of a synthetic bacteria-yeast ecosystem.

Authors:  Konstantinos Biliouris; David Babson; Claudia Schmidt-Dannert; Yiannis N Kaznessis
Journal:  BMC Syst Biol       Date:  2012-06-06

9.  Poisson-Nernst-Planck models of nonequilibrium ion electrodiffusion through a protegrin transmembrane pore.

Authors:  Dan S Bolintineanu; Abdallah Sayyed-Ahmad; H Ted Davis; Yiannis N Kaznessis
Journal:  PLoS Comput Biol       Date:  2009-01-30       Impact factor: 4.475

10.  A synthetic Escherichia coli predator-prey ecosystem.

Authors:  Frederick K Balagaddé; Hao Song; Jun Ozaki; Cynthia H Collins; Matthew Barnet; Frances H Arnold; Stephen R Quake; Lingchong You
Journal:  Mol Syst Biol       Date:  2008-04-15       Impact factor: 11.429

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