Literature DB >> 25309261

Crystal structure of 2-tert-butyl-1,3-thia-zolo[4,5-b]pyridine.

Gamal A El-Hiti1, Keith Smith2, Amany S Hegazy2, Ali M Masmali1, Benson M Kariuki2.   

Abstract

The title compound, C10H12N2S, does not contain any strong hydrogen-bond donors but two long C-H⋯N contacts are observed in the crystal structure, with the most linear inter-action linking mol-ecules along [010]. The ellipsoids of the tert-butyl group indicate large librational motion.

Entities:  

Keywords:  1,3-thia­zolo[4,5-b]pyridine; C—H⋯N contacts; crystal structure

Year:  2014        PMID: 25309261      PMCID: PMC4186112          DOI: 10.1107/S160053681401633X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of substituted thiazolopyridines, see: Smith et al. (1994 ▶, 1995 ▶); El-Hiti (2003 ▶); Johnson et al. (2006 ▶); Rao et al. (2009 ▶); Sahasrabudhe et al. (2009 ▶); Lee et al. (2010 ▶); Chaban et al. (2013 ▶). For the crystal structure of a related compound, see: Yu et al. (2007 ▶).

Experimental

Crystal data

C10H12N2S M = 192.28 Orthorhombic, a = 9.4606 (3) Å b = 9.7999 (3) Å c = 11.1155 (4) Å V = 1030.55 (6) Å3 Z = 4 Cu Kα radiation μ = 2.42 mm−1 T = 296 K 0.40 × 0.29 × 0.14 mm

Data collection

Agilent SuperNova (Dual, Cu at zero, Atlas) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014 ▶) T min = 0.721, T max = 1.000 3395 measured reflections 1996 independent reflections 1951 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.090 S = 1.12 1996 reflections 121 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.22 e Å−3 Absolute structure: Flack x determined using 791 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013 ▶). Absolute structure parameter: 0.027 (7)

Data collection: CrysAlis PRO (Agilent, 2014 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS2013 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: CHEMDRAW ultra (Cambridge Soft, 2001 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, shelx. DOI: 10.1107/S160053681401633X/zs2307sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681401633X/zs2307Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S160053681401633X/zs2307Isup3.cml Click here for additional data file. . DOI: 10.1107/S160053681401633X/zs2307fig1.tif A mol­ecule of the title compound showing atom labels and 50% probability displacement ellipsoids for non-H atoms. Click here for additional data file. . DOI: 10.1107/S160053681401633X/zs2307fig2.tif Crystal structure packing with the long linear C—H⋯N contacts shown as dashed lines. CCDC reference: 1013859 Additional supporting information: crystallographic information; 3D view; checkCIF report
C10H12N2SDx = 1.239 Mg m3
Mr = 192.28Cu Kα radiation, λ = 1.54184 Å
Orthorhombic, P212121Cell parameters from 1951 reflections
a = 9.4606 (3) Åθ = 6.0–73.4°
b = 9.7999 (3) ŵ = 2.42 mm1
c = 11.1155 (4) ÅT = 296 K
V = 1030.55 (6) Å3Plate, colourless
Z = 40.40 × 0.29 × 0.14 mm
F(000) = 408
Agilent SuperNova (Dual, Cu at zero, Atlas) diffractometer1951 reflections with I > 2σ(I)
Radiation source: SuperNova (Cu) X-ray SourceRint = 0.016
ω scansθmax = 73.4°, θmin = 6.0°
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014)h = −7→11
Tmin = 0.721, Tmax = 1.000k = −11→12
3395 measured reflectionsl = −13→10
1996 independent reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.033w = 1/[σ2(Fo2) + (0.0513P)2 + 0.0815P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.090(Δ/σ)max < 0.001
S = 1.12Δρmax = 0.16 e Å3
1996 reflectionsΔρmin = −0.22 e Å3
121 parametersAbsolute structure: Flack x determined using 791 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013).
0 restraintsAbsolute structure parameter: 0.027 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.8245 (2)0.2846 (2)0.37042 (19)0.0458 (5)
C20.6967 (2)0.4685 (2)0.33748 (19)0.0435 (5)
C30.7716 (2)0.5154 (3)0.4378 (2)0.0483 (5)
C40.7455 (3)0.6454 (3)0.4822 (3)0.0645 (6)
H40.79240.67890.54960.077*
C50.6470 (3)0.7218 (3)0.4218 (3)0.0677 (7)
H50.62600.80970.44770.081*
C60.5791 (3)0.6682 (3)0.3225 (3)0.0656 (7)
H60.51380.72340.28330.079*
C70.8831 (3)0.1417 (2)0.3577 (2)0.0556 (6)
C80.8599 (5)0.0641 (4)0.4747 (3)0.0938 (11)
H8A0.90960.10900.53870.141*
H8B0.8948−0.02740.46620.141*
H8C0.76080.06170.49290.141*
C91.0411 (4)0.1506 (5)0.3319 (5)0.1151 (16)
H9A1.05600.19830.25750.173*
H9B1.07980.06030.32600.173*
H9C1.08710.19900.39610.173*
C100.8067 (6)0.0657 (4)0.2577 (4)0.124 (2)
H10A0.70760.06140.27580.186*
H10B0.8440−0.02510.25130.186*
H10C0.82030.11290.18290.186*
N10.72864 (19)0.3364 (2)0.30173 (16)0.0453 (4)
N20.6004 (2)0.5424 (2)0.2787 (2)0.0576 (5)
S10.88585 (7)0.39028 (7)0.48644 (5)0.0607 (2)
U11U22U33U12U13U23
C10.0431 (10)0.0571 (12)0.0371 (10)0.0007 (10)−0.0013 (8)0.0016 (9)
C20.0423 (10)0.0483 (11)0.0398 (10)−0.0043 (9)0.0022 (8)0.0053 (9)
C30.0443 (11)0.0550 (12)0.0457 (11)−0.0048 (9)0.0022 (9)−0.0035 (9)
C40.0664 (15)0.0611 (14)0.0661 (15)−0.0075 (11)0.0034 (13)−0.0160 (13)
C50.0707 (17)0.0500 (13)0.0823 (19)−0.0008 (12)0.0129 (15)−0.0023 (13)
C60.0686 (16)0.0542 (13)0.0740 (17)0.0102 (12)0.0041 (14)0.0157 (13)
C70.0564 (12)0.0560 (13)0.0544 (12)0.0118 (11)−0.0010 (11)0.0012 (10)
C80.122 (3)0.078 (2)0.081 (2)0.0248 (19)0.009 (2)0.0219 (17)
C90.074 (2)0.097 (3)0.174 (5)0.0241 (19)0.044 (3)−0.007 (3)
C100.187 (5)0.073 (2)0.112 (3)0.052 (3)−0.072 (3)−0.034 (2)
N10.0468 (9)0.0492 (9)0.0401 (9)0.0001 (8)−0.0045 (8)0.0005 (8)
N20.0588 (11)0.0570 (11)0.0570 (12)0.0070 (10)−0.0078 (10)0.0101 (9)
S10.0568 (3)0.0761 (4)0.0493 (3)0.0096 (3)−0.0161 (3)−0.0112 (3)
C1—N11.290 (3)C6—H60.9300
C1—C71.512 (3)C7—C101.521 (4)
C1—S11.753 (2)C7—C81.522 (4)
C2—N21.335 (3)C7—C91.524 (4)
C2—N11.387 (3)C8—H8A0.9600
C2—C31.399 (3)C8—H8B0.9600
C3—C41.389 (4)C8—H8C0.9600
C3—S11.722 (3)C9—H9A0.9600
C4—C51.371 (4)C9—H9B0.9600
C4—H40.9300C9—H9C0.9600
C5—C61.380 (4)C10—H10A0.9600
C5—H50.9300C10—H10B0.9600
C6—N21.341 (4)C10—H10C0.9600
N1—C1—C7124.6 (2)C8—C7—C9109.3 (3)
N1—C1—S1115.80 (18)C7—C8—H8A109.5
C7—C1—S1119.64 (17)C7—C8—H8B109.5
N2—C2—N1121.0 (2)H8A—C8—H8B109.5
N2—C2—C3123.9 (2)C7—C8—H8C109.5
N1—C2—C3115.1 (2)H8A—C8—H8C109.5
C4—C3—C2119.7 (2)H8B—C8—H8C109.5
C4—C3—S1130.8 (2)C7—C9—H9A109.5
C2—C3—S1109.55 (18)C7—C9—H9B109.5
C5—C4—C3116.6 (3)H9A—C9—H9B109.5
C5—C4—H4121.7C7—C9—H9C109.5
C3—C4—H4121.7H9A—C9—H9C109.5
C4—C5—C6120.0 (3)H9B—C9—H9C109.5
C4—C5—H5120.0C7—C10—H10A109.5
C6—C5—H5120.0C7—C10—H10B109.5
N2—C6—C5124.8 (3)H10A—C10—H10B109.5
N2—C6—H6117.6C7—C10—H10C109.5
C5—C6—H6117.6H10A—C10—H10C109.5
C1—C7—C10110.3 (2)H10B—C10—H10C109.5
C1—C7—C8109.3 (2)C1—N1—C2110.6 (2)
C10—C7—C8108.1 (3)C2—N2—C6115.0 (2)
C1—C7—C9108.9 (3)C3—S1—C188.96 (11)
C10—C7—C9110.9 (3)
D—H···AD—HH···AD···AD—H···A
C4—H4···N1i0.932.813.564 (3)138
C6—H6···N1ii0.932.723.620 (3)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C4—H4⋯N1i 0.932.813.564 (3)138
C6—H6⋯N1ii 0.932.723.620 (3)164

Symmetry codes: (i) ; (ii) .

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