Literature DB >> 25309254

Crystal structure of a monoclinic polymorph of 5-amino-1,3,4-thia-diazol-2(3H)-one.

Namhun Kim1, Sung Kwon Kang1.   

Abstract

The title compound, C2H3N3OS, is a monoclinic (P21/c) polymorph of the previously reported triclinic structure [Kang et al. (2012 ▶). Acta Cryst. E68, o1198]. The asymmetric unit contains two independent mol-ecules which are essentially planar, with r.m.s. deviations of 0.001 and 0.032 Å from the mean plane defined by the seven non-H atoms. In the crystal, N-H⋯N and N-H⋯O hydrogen bonds link the mol-ecules into a sheet parallel to (111).

Entities:  

Keywords:  crystal structure; hydrogen bonds; polymorph; thia­diazolone

Year:  2014        PMID: 25309254      PMCID: PMC4186073          DOI: 10.1107/S1600536814016055

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structures and reactivity of thia­diazole derivatives, see: Parkanyi et al. (1989 ▶); Cho et al. (1996 ▶). For the triclinic polymorph, see; Kang et al. (2012 ▶).

Experimental

Crystal data

C2H3N3OS M = 117.13 Monoclinic, a = 3.8182 (3) Å b = 10.8166 (7) Å c = 21.8043 (15) Å β = 91.015 (4)° V = 900.37 (11) Å3 Z = 8 Mo Kα radiation μ = 0.58 mm−1 T = 296 K 0.21 × 0.1 × 0.09 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.911, T max = 0.931 5812 measured reflections 1709 independent reflections 1376 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.099 S = 1.08 1709 reflections 151 parameters All H-atom parameters refined Δρmax = 0.37 e Å−3 Δρmin = −0.29 e Å−3

Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS2013 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814016055/tk5326sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814016055/tk5326Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814016055/tk5326Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814016055/tk5326fig1.tif Mol­ecular structure of the title compound, showing the atom-numbering scheme and 30% probability ellipsoids. Inter­molecular N—H⋯N and N—H⋯O hydrogen bonds are indicated by dashed lines. Click here for additional data file. . DOI: 10.1107/S1600536814016055/tk5326fig2.tif Part of the crystal structure of the title compound, showing mol­ecules linked by inter­molecular N—H⋯N and N—H⋯O hydrogen bonds (dashed lines). CCDC reference: 1013072 Additional supporting information: crystallographic information; 3D view; checkCIF report
C2H3N3OSF(000) = 480
Mr = 117.13Dx = 1.728 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1700 reflections
a = 3.8182 (3) Åθ = 2.7–25.7°
b = 10.8166 (7) ŵ = 0.58 mm1
c = 21.8043 (15) ÅT = 296 K
β = 91.015 (4)°Block, colourless
V = 900.37 (11) Å30.21 × 0.1 × 0.09 mm
Z = 8
Bruker SMART CCD area-detector diffractometer1376 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.048
φ and ω scansθmax = 25.8°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −4→4
Tmin = 0.911, Tmax = 0.931k = −12→13
5812 measured reflectionsl = −26→26
1709 independent reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047All H-atom parameters refined
wR(F2) = 0.099w = 1/[σ2(Fo2) + (0.0317P)2 + 0.833P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
1709 reflectionsΔρmax = 0.37 e Å3
151 parametersΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
S10.5670 (2)0.33458 (7)0.36148 (3)0.0316 (2)
C20.4389 (8)0.4860 (3)0.33723 (13)0.0297 (7)
N30.5448 (8)0.5631 (3)0.38116 (12)0.0327 (7)
H30.487 (9)0.631 (3)0.3829 (14)0.030 (10)*
N40.7091 (7)0.5177 (2)0.43328 (11)0.0301 (6)
C50.7362 (8)0.3992 (3)0.42932 (13)0.0259 (7)
O60.2779 (7)0.5107 (2)0.28964 (10)0.0454 (6)
N70.8708 (8)0.3270 (3)0.47486 (13)0.0349 (7)
H7A0.968 (9)0.259 (3)0.4641 (14)0.035 (10)*
H7B0.983 (10)0.364 (3)0.5033 (17)0.049 (11)*
S80.0629 (2)1.02405 (7)0.34352 (4)0.0334 (2)
C90.2461 (8)1.0171 (3)0.41853 (13)0.0294 (7)
N100.3361 (7)0.9003 (2)0.42943 (12)0.0315 (6)
H100.438 (8)0.884 (3)0.4630 (14)0.024 (8)*
N110.2747 (8)0.8126 (2)0.38422 (11)0.0359 (7)
C120.1325 (8)0.8645 (3)0.33686 (13)0.0296 (7)
O130.2843 (7)1.1052 (2)0.45367 (10)0.0458 (7)
N140.0397 (10)0.8045 (4)0.28504 (14)0.0502 (9)
H14A−0.052 (11)0.853 (4)0.2546 (19)0.068 (13)*
H14B0.074 (10)0.738 (4)0.2852 (17)0.043 (12)*
U11U22U33U12U13U23
S10.0410 (5)0.0227 (4)0.0307 (4)0.0018 (4)−0.0078 (3)−0.0059 (3)
C20.0324 (18)0.0272 (17)0.0295 (16)0.0007 (14)−0.0021 (13)−0.0011 (13)
N30.0497 (19)0.0174 (14)0.0307 (15)0.0063 (13)−0.0095 (12)−0.0019 (11)
N40.0401 (16)0.0220 (14)0.0278 (13)0.0087 (12)−0.0088 (11)−0.0033 (11)
C50.0287 (17)0.0221 (16)0.0269 (15)0.0020 (13)0.0001 (12)−0.0042 (12)
O60.0609 (17)0.0390 (14)0.0355 (13)0.0025 (12)−0.0201 (12)0.0028 (11)
N70.0482 (19)0.0240 (16)0.0319 (15)0.0073 (14)−0.0118 (13)−0.0026 (13)
S80.0422 (5)0.0250 (4)0.0326 (4)0.0077 (4)−0.0091 (3)0.0031 (3)
C90.0343 (18)0.0242 (16)0.0296 (16)0.0068 (14)−0.0037 (13)0.0004 (13)
N100.0479 (18)0.0233 (14)0.0229 (13)0.0116 (12)−0.0093 (12)−0.0023 (11)
N110.0550 (19)0.0239 (14)0.0284 (14)0.0093 (13)−0.0091 (12)−0.0033 (11)
C120.0358 (19)0.0242 (16)0.0288 (16)0.0051 (14)−0.0027 (13)−0.0019 (13)
O130.0714 (18)0.0255 (13)0.0400 (13)0.0124 (12)−0.0154 (12)−0.0079 (11)
N140.079 (3)0.036 (2)0.0346 (18)0.0114 (18)−0.0230 (16)−0.0056 (15)
S1—C51.749 (3)S8—C121.753 (3)
S1—C21.786 (3)S8—C91.769 (3)
C2—O61.226 (4)C9—O131.230 (3)
C2—N31.328 (4)C9—N101.329 (4)
N3—N41.379 (3)N10—N111.385 (3)
N3—H30.77 (3)N10—H100.84 (3)
N4—C51.289 (4)N11—C121.287 (4)
C5—N71.357 (4)C12—N141.345 (4)
N7—H7A0.86 (3)N14—H14A0.91 (4)
N7—H7B0.85 (4)N14—H14B0.73 (4)
C5—S1—C288.81 (14)C12—S8—C988.66 (14)
O6—C2—N3127.9 (3)O13—C9—N10126.7 (3)
O6—C2—S1125.5 (2)O13—C9—S8125.7 (2)
N3—C2—S1106.5 (2)N10—C9—S8107.6 (2)
C2—N3—N4120.0 (3)C9—N10—N11118.9 (3)
C2—N3—H3123 (2)C9—N10—H10118 (2)
N4—N3—H3115 (2)N11—N10—H10123 (2)
C5—N4—N3109.5 (2)C12—N11—N10109.6 (2)
N4—C5—N7123.6 (3)N11—C12—N14124.4 (3)
N4—C5—S1115.1 (2)N11—C12—S8115.2 (2)
N7—C5—S1121.2 (2)N14—C12—S8120.4 (3)
C5—N7—H7A117 (2)C12—N14—H14A115 (3)
C5—N7—H7B116 (2)C12—N14—H14B115 (3)
H7A—N7—H7B113 (3)H14A—N14—H14B130 (4)
D—H···AD—HH···AD···AD—H···A
N3—H3···N110.77 (3)2.12 (3)2.891 (4)174 (3)
N7—H7A···O13i0.86 (3)2.07 (4)2.913 (4)167 (3)
N7—H7B···N4ii0.85 (4)2.21 (4)3.048 (4)171 (3)
N10—H10···O13iii0.84 (3)2.09 (3)2.910 (3)165 (3)
N14—H14A···O6iv0.91 (4)2.14 (4)3.005 (4)159 (4)
N14—H14B···O60.73 (4)2.58 (4)3.306 (5)173 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3⋯N110.77 (3)2.12 (3)2.891 (4)174 (3)
N7—H7A⋯O13i 0.86 (3)2.07 (4)2.913 (4)167 (3)
N7—H7B⋯N4ii 0.85 (4)2.21 (4)3.048 (4)171 (3)
N10—H10⋯O13iii 0.84 (3)2.09 (3)2.910 (3)165 (3)
N14—H14A⋯O6iv 0.91 (4)2.14 (4)3.005 (4)159 (4)
N14—H14B⋯O60.73 (4)2.58 (4)3.306 (5)173 (4)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  5-Amino-1,3,4-thia-diazol-2(3H)-one.

Authors:  Sung Kwon Kang; Nam Sook Cho; Siyoung Jang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-28
  2 in total

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