Literature DB >> 22606138

5-Amino-1,3,4-thia-diazol-2(3H)-one.

Sung Kwon Kang1, Nam Sook Cho, Siyoung Jang.   

Abstract

The asymmetric unit of the title compound, C(2)H(3)N(3)OS, contains three independent mol-ecules which are essentially planar, with r.m.s. deviations of 0.011 (2)-0.027 (2) Å from the mean plane defined by the seven non-H atoms. In the crystal, N-H⋯N and N-H⋯O hydrogen bonds link the mol-ecules into a sheet parallel to the (111) plane.

Entities:  

Year:  2012        PMID: 22606138      PMCID: PMC3344135          DOI: 10.1107/S1600536812012433

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures and reactivity of thia­diazole derivatives, see: Parkanyi et al. (1989 ▶); Cho, Cho et al. (1996 ▶); Cho, Ra et al. (1996 ▶). For the biological activity of thia­diazole derivatives, see: Castro et al. (2008 ▶); Ra, Cho & Cho (1998 ▶); Ra, Cho, Moon & Kang (1998 ▶).

Experimental

Crystal data

C2H3N3OS M = 117.13 Triclinic, a = 7.2860 (2) Å b = 10.2982 (3) Å c = 10.7727 (3) Å α = 63.721 (3)° β = 73.122 (2)° γ = 76.737 (2)° V = 688.74 (3) Å3 Z = 6 Mo Kα radiation μ = 0.57 mm−1 T = 296 K 0.15 × 0.1 × 0.05 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.93, T max = 0.97 23857 measured reflections 3433 independent reflections 2526 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.080 S = 0.94 3433 reflections 226 parameters All H-atom parameters refined Δρmax = 0.30 e Å−3 Δρmin = −0.26 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812012433/is5096sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812012433/is5096Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812012433/is5096Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C2H3N3OSZ = 6
Mr = 117.13F(000) = 360
Triclinic, P1Dx = 1.694 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.2860 (2) ÅCell parameters from 5437 reflections
b = 10.2982 (3) Åθ = 2.2–26.1°
c = 10.7727 (3) ŵ = 0.57 mm1
α = 63.721 (3)°T = 296 K
β = 73.122 (2)°Block, colourless
γ = 76.737 (2)°0.15 × 0.1 × 0.05 mm
V = 688.74 (3) Å3
Bruker SMART CCD area-detector diffractometer2526 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.055
φ and ω scansθmax = 28.3°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −9→9
Tmin = 0.93, Tmax = 0.97k = −13→13
23857 measured reflectionsl = −14→14
3433 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.080All H-atom parameters refined
S = 0.94w = 1/[σ2(Fo2) + (0.0423P)2] where P = (Fo2 + 2Fc2)/3
3433 reflections(Δ/σ)max < 0.001
226 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.86165 (6)−0.07773 (5)−0.06572 (4)0.03647 (13)
C20.7587 (2)0.10880 (18)−0.13554 (16)0.0339 (4)
N30.6466 (2)0.13649 (15)−0.02585 (14)0.0329 (3)
H30.580 (3)0.219 (2)−0.0362 (19)0.044 (5)*
N40.62764 (19)0.02538 (14)0.10886 (13)0.0303 (3)
C50.7333 (2)−0.09181 (17)0.10313 (16)0.0289 (3)
O60.7853 (2)0.19397 (15)−0.26078 (12)0.0517 (4)
N70.7416 (3)−0.21857 (17)0.21825 (17)0.0472 (4)
H7A0.825 (3)−0.291 (3)0.210 (2)0.072 (7)*
H7B0.672 (3)−0.224 (2)0.297 (2)0.052 (6)*
S80.15828 (7)0.02436 (5)0.59226 (4)0.03889 (13)
C90.3260 (2)−0.05097 (18)0.47618 (16)0.0338 (4)
N100.3484 (2)0.05559 (15)0.34594 (14)0.0353 (3)
H100.439 (3)0.047 (2)0.262 (2)0.065 (6)*
N110.2481 (2)0.19183 (14)0.32756 (13)0.0354 (3)
C120.1437 (2)0.19073 (18)0.44702 (16)0.0348 (4)
O130.40594 (19)−0.17651 (13)0.51031 (13)0.0485 (3)
N140.0375 (3)0.3114 (2)0.4619 (2)0.0592 (5)
H14A−0.048 (3)0.297 (2)0.536 (3)0.070 (7)*
H14B0.019 (3)0.387 (2)0.386 (2)0.050 (6)*
S150.23799 (7)0.66689 (5)−0.15169 (5)0.04302 (14)
C160.1723 (2)0.55543 (18)0.03347 (17)0.0363 (4)
N170.2688 (2)0.42407 (15)0.05437 (15)0.0353 (3)
H170.262 (3)0.352 (2)0.138 (2)0.053 (6)*
N180.3933 (2)0.40035 (14)−0.06009 (13)0.0354 (3)
C190.3895 (2)0.51734 (17)−0.17336 (17)0.0356 (4)
O200.0594 (2)0.59341 (14)0.12439 (14)0.0537 (4)
N210.4930 (3)0.5249 (2)−0.30232 (18)0.0651 (6)
H21A0.492 (4)0.606 (3)−0.363 (3)0.081 (8)*
H21B0.566 (3)0.455 (3)−0.304 (2)0.071 (8)*
U11U22U33U12U13U23
S10.0365 (2)0.0374 (2)0.0315 (2)0.00386 (18)0.00096 (17)−0.01947 (18)
C20.0319 (9)0.0371 (9)0.0289 (8)−0.0040 (7)−0.0003 (7)−0.0139 (7)
N30.0386 (8)0.0250 (7)0.0254 (6)0.0032 (6)−0.0008 (6)−0.0089 (6)
N40.0345 (7)0.0262 (7)0.0233 (6)0.0000 (6)−0.0004 (5)−0.0091 (5)
C50.0290 (8)0.0292 (8)0.0274 (7)−0.0007 (7)−0.0024 (6)−0.0139 (7)
O60.0631 (9)0.0485 (8)0.0246 (6)−0.0049 (7)0.0027 (6)−0.0064 (6)
N70.0625 (12)0.0306 (9)0.0324 (8)0.0104 (8)−0.0046 (8)−0.0096 (7)
S80.0458 (3)0.0368 (2)0.02102 (19)−0.00454 (19)0.00086 (17)−0.00531 (17)
C90.0375 (9)0.0317 (9)0.0270 (8)−0.0028 (7)−0.0059 (7)−0.0084 (7)
N100.0412 (8)0.0293 (7)0.0241 (6)0.0039 (6)−0.0013 (6)−0.0080 (6)
N110.0412 (8)0.0276 (7)0.0224 (6)0.0029 (6)0.0011 (6)−0.0052 (6)
C120.0366 (9)0.0310 (9)0.0261 (8)−0.0022 (7)0.0009 (7)−0.0078 (7)
O130.0601 (9)0.0290 (7)0.0423 (7)0.0049 (6)−0.0128 (6)−0.0056 (6)
N140.0692 (13)0.0386 (10)0.0393 (10)0.0088 (9)0.0126 (9)−0.0111 (8)
S150.0533 (3)0.0232 (2)0.0365 (2)0.00734 (19)−0.0052 (2)−0.00628 (18)
C160.0386 (10)0.0298 (9)0.0342 (9)0.0008 (7)−0.0040 (7)−0.0121 (7)
N170.0417 (9)0.0258 (7)0.0255 (7)0.0029 (6)−0.0009 (6)−0.0061 (6)
N180.0423 (8)0.0241 (7)0.0267 (7)0.0036 (6)0.0006 (6)−0.0074 (6)
C190.0428 (10)0.0240 (8)0.0305 (8)0.0000 (7)−0.0020 (7)−0.0083 (7)
O200.0561 (9)0.0453 (8)0.0474 (7)0.0072 (6)0.0046 (6)−0.0238 (6)
N210.0938 (16)0.0328 (10)0.0314 (9)0.0067 (10)0.0134 (9)−0.0036 (8)
S1—C51.7449 (15)N10—H100.98 (2)
S1—C21.7905 (17)N11—C121.2874 (19)
C2—O61.2270 (19)C12—N141.354 (2)
C2—N31.333 (2)N14—H14A0.83 (2)
N3—N41.3857 (18)N14—H14B0.86 (2)
N3—H30.854 (19)S15—C191.7419 (17)
N4—C51.2905 (19)S15—C161.7876 (17)
C5—N71.349 (2)C16—O201.2298 (19)
N7—H7A0.87 (2)C16—N171.327 (2)
N7—H7B0.84 (2)N17—N181.3853 (18)
S8—C121.7419 (16)N17—H170.88 (2)
S8—C91.7874 (17)N18—C191.2821 (19)
C9—O131.2264 (19)C19—N211.352 (2)
C9—N101.336 (2)N21—H21A0.80 (3)
N10—N111.3817 (18)N21—H21B0.79 (2)
C5—S1—C288.70 (7)C12—N11—N10110.16 (13)
O6—C2—N3126.79 (16)N11—C12—N14123.00 (15)
O6—C2—S1126.30 (13)N11—C12—S8115.37 (12)
N3—C2—S1106.90 (12)N14—C12—S8121.53 (13)
C2—N3—N4119.16 (14)C12—N14—H14A116.1 (16)
C2—N3—H3122.2 (13)C12—N14—H14B117.8 (13)
N4—N3—H3118.5 (13)H14A—N14—H14B118 (2)
C5—N4—N3109.74 (12)C19—S15—C1688.49 (8)
N4—C5—N7122.96 (15)O20—C16—N17126.47 (16)
N4—C5—S1115.48 (12)O20—C16—S15126.48 (13)
N7—C5—S1121.54 (12)N17—C16—S15107.05 (12)
C5—N7—H7A118.8 (15)C16—N17—N18119.02 (14)
C5—N7—H7B119.4 (14)C16—N17—H17122.9 (13)
H7A—N7—H7B122 (2)N18—N17—H17118.0 (13)
C12—S8—C988.73 (7)C19—N18—N17109.75 (13)
O13—C9—N10126.70 (16)N18—C19—N21122.74 (16)
O13—C9—S8126.29 (13)N18—C19—S15115.68 (12)
N10—C9—S8107.01 (12)N21—C19—S15121.57 (13)
C9—N10—N11118.72 (13)C19—N21—H21A113.9 (17)
C9—N10—H10125.0 (12)C19—N21—H21B116.2 (17)
N11—N10—H10116.1 (12)H21A—N21—H21B128 (2)
D—H···AD—HH···AD···AD—H···A
N3—H3···N180.854 (19)2.004 (19)2.8516 (19)171.9 (18)
N7—H7A···O20i0.87 (2)2.07 (2)2.907 (2)160 (2)
N10—H10···N40.98 (2)1.88 (2)2.8558 (19)175.7 (18)
N14—H14A···O6ii0.83 (2)2.10 (2)2.897 (2)162 (2)
N17—H17···N110.88 (2)1.97 (2)2.8424 (18)179 (4)
N21—H21A···O13iii0.80 (3)2.10 (3)2.878 (2)163 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3⋯N180.854 (19)2.004 (19)2.8516 (19)171.9 (18)
N7—H7A⋯O20i0.87 (2)2.07 (2)2.907 (2)160 (2)
N10—H10⋯N40.98 (2)1.88 (2)2.8558 (19)175.7 (18)
N14—H14A⋯O6ii0.83 (2)2.10 (2)2.897 (2)162 (2)
N17—H17⋯N110.88 (2)1.97 (2)2.8424 (18)179 (4)
N21—H21A⋯O13iii0.80 (3)2.10 (3)2.878 (2)163 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Non-ATP competitive glycogen synthase kinase 3beta (GSK-3beta) inhibitors: study of structural requirements for thiadiazolidinone derivatives.

Authors:  Ana Castro; Arantxa Encinas; Carmen Gil; Stefan Bräse; Williams Porcal; Concepción Pérez; Francisco J Moreno; Ana Martínez
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1.  Crystal structure of a monoclinic polymorph of 5-amino-1,3,4-thia-diazol-2(3H)-one.

Authors:  Namhun Kim; Sung Kwon Kang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-08-01
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