Literature DB >> 25309216

Crystal structure of 1'-(2-methyl-prop-yl)-2,3-di-hydro-spiro-[1-benzo-thio-pyran-4,4'-imidazolidine]-2',5'-dione.

Cynthia E Theodore1, S Naveen2, S B Benaka Prasad1, M Madaiah3, C S Ananda Kumar4, N K Lokanath5.   

Abstract

In the title compound, C15H18N2O2S, the 2,3-di-hydro-1-benzo-thio-pyran ring adopts a sofa conformation and the hydantoin ring is twisted with respect to the benzene ring at 78.73 (17)°. In the crystal, pairs of N-H⋯O hydrogen bonds link the mol-ecules into inversion dimers.

Entities:  

Keywords:  crystal structure; hydantoin compounds; hydrogen bonding; spiro­[1-benzo­thio­pyran-4,4′-imidazolidine]

Year:  2014        PMID: 25309216      PMCID: PMC4186156          DOI: 10.1107/S1600536814018030

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background and applications of hydantoin compounds, see: Nefzi et al. (2002 ▶); Park & Kurth (2000 ▶); Manjunath et al. (2012 ▶); Hussein et al. (2014 ▶). For related structures, see: Manjunath et al. (2011 ▶); Hussein et al. (2014 ▶).

Experimental

Crystal data

C15H18N2O2S M = 290.38 Monoclinic, a = 13.279 (3) Å b = 9.939 (3) Å c = 13.264 (3) Å β = 118.56 (1)° V = 1537.6 (7) Å3 Z = 4 Cu Kα radiation μ = 1.90 mm−1 T = 296 K 0.20 × 0.15 × 0.15 mm

Data collection

Bruker X8 Proteum diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2013 ▶) T min = 0.747, T max = 0.753 5024 measured reflections 2397 independent reflections 1959 reflections with I > 2σ(I) R int = 0.067

Refinement

R[F 2 > 2σ(F 2)] = 0.066 wR(F 2) = 0.195 S = 1.06 2397 reflections 184 parameters H-atom parameters constrained Δρmax = 0.43 e Å−3 Δρmin = −0.47 e Å−3

Data collection: APEX2 (Bruker, 2013 ▶); cell refinement: SAINT (Bruker, 2013 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814018030/xu5809sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814018030/xu5809Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814018030/xu5809Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814018030/xu5809fig1.tif A view of the title mol­ecule, with atom labelling. Displacement ellipsoids are drawn at the 50% probability level. Click here for additional data file. . DOI: 10.1107/S1600536814018030/xu5809fig2.tif A view of the crystal packing of the title compound showing inverted dimers. CCDC reference: 1018087 Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H18N2O2SZ = 4
Mr = 290.38F(000) = 616
Monoclinic, P21/cDx = 1.254 Mg m3
Hall symbol: -P 2ybcCu Kα radiation, λ = 1.54178 Å
a = 13.279 (3) ŵ = 1.90 mm1
b = 9.939 (3) ÅT = 296 K
c = 13.264 (3) ÅBlock, yellow
β = 118.56 (1)°0.20 × 0.15 × 0.15 mm
V = 1537.6 (7) Å3
Bruker X8 Proteum diffractometer1959 reflections with I > 2σ(I)
Detector resolution: 18.4 pixels mm-1Rint = 0.067
φ and ω scansθmax = 64.2°, θmin = 3.8°
Absorption correction: multi-scan (SADABS; Bruker, 2013)h = −15→14
Tmin = 0.747, Tmax = 0.753k = −8→11
5024 measured reflectionsl = −11→15
2397 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.066H-atom parameters constrained
wR(F2) = 0.195w = 1/[σ2(Fo2) + (0.1345P)2 + 0.3286P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2397 reflectionsΔρmax = 0.43 e Å3
184 parametersΔρmin = −0.47 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), FC*=KFC[1+0.001XFC2Λ3/SIN(2Θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0092 (15)
Experimental. H1NMR (DMSO, 400 MHz) δ:9.0(s, 1H, –NH), δ:7.2(m, 2H, Ar—H) δ:7.1(m, 2H, Ar—H) δ:3.3(d, 2H, –CH2–)δ:3.1(m, 2H, –CH2–) δ:2.1(m, 1H, –CH–) δ:0.9(m, 6H, –CH3–). Melting point 636.52 K.
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.50647 (7)0.34459 (8)0.13658 (6)0.0529 (3)
O150.8299 (2)0.2088 (3)0.52413 (19)0.0547 (8)
O160.62741 (16)0.4706 (2)0.64774 (16)0.0400 (6)
N110.59964 (19)0.4235 (2)0.46550 (18)0.0348 (7)
N130.75117 (18)0.3354 (2)0.61452 (18)0.0305 (7)
C20.4715 (3)0.2679 (3)0.2388 (3)0.0490 (10)
C30.5783 (3)0.2225 (3)0.3462 (2)0.0426 (9)
C40.6545 (2)0.3412 (2)0.4141 (2)0.0302 (8)
C50.6935 (2)0.4273 (3)0.3446 (2)0.0343 (8)
C60.7916 (3)0.5061 (3)0.4013 (3)0.0487 (10)
C70.8306 (3)0.5889 (4)0.3438 (3)0.0629 (12)
C80.7704 (4)0.5939 (4)0.2254 (3)0.0637 (12)
C90.6728 (3)0.5174 (4)0.1671 (3)0.0521 (11)
C100.6325 (3)0.4346 (3)0.2243 (2)0.0374 (8)
C120.6543 (2)0.4167 (3)0.5811 (2)0.0299 (7)
C140.7571 (2)0.2853 (3)0.5222 (2)0.0342 (8)
C170.8345 (2)0.3059 (3)0.7353 (2)0.0362 (8)
C180.9406 (3)0.3929 (4)0.7806 (2)0.0475 (10)
C190.9119 (4)0.5421 (4)0.7785 (4)0.0785 (16)
C201.0243 (3)0.3466 (5)0.9022 (3)0.0727 (16)
H2A0.429700.331900.260000.0590*
H2B0.422100.191000.203600.0590*
H3A0.622100.162300.324400.0510*
H3B0.555600.172800.395000.0510*
H60.832500.502700.481000.0580*
H70.896400.640500.384100.0760*
H80.795600.648800.185200.0770*
H90.632900.521300.087300.0630*
H110.539100.471000.426300.0420*
H17A0.857000.212100.741600.0430*
H17B0.797800.319300.782500.0430*
H180.976700.379400.731900.0570*
H19A0.862900.569900.700700.1180*
H19B0.981400.593900.810300.1180*
H19C0.873300.556400.823100.1180*
H20A0.991400.362500.951700.1090*
H20B1.094700.396000.929900.1090*
H20C1.039500.252300.901500.1090*
U11U22U33U12U13U23
S10.0564 (6)0.0552 (6)0.0243 (5)0.0026 (4)0.0009 (4)0.0035 (3)
O150.0531 (13)0.0668 (15)0.0394 (12)0.0333 (12)0.0183 (10)0.0072 (11)
O160.0359 (10)0.0554 (12)0.0244 (10)0.0082 (9)0.0109 (8)−0.0034 (8)
N110.0302 (11)0.0462 (13)0.0214 (11)0.0122 (10)0.0071 (9)0.0028 (9)
N130.0249 (11)0.0396 (12)0.0168 (11)0.0062 (9)0.0017 (9)0.0031 (9)
C20.0441 (17)0.0490 (17)0.0367 (16)−0.0070 (13)0.0055 (14)−0.0110 (13)
C30.0496 (17)0.0408 (16)0.0319 (15)−0.0034 (13)0.0151 (13)0.0008 (12)
C40.0347 (14)0.0328 (14)0.0190 (13)0.0056 (10)0.0096 (11)−0.0007 (10)
C50.0384 (14)0.0352 (14)0.0269 (14)0.0059 (11)0.0136 (11)0.0001 (11)
C60.0464 (17)0.0569 (19)0.0367 (17)−0.0064 (14)0.0149 (14)−0.0048 (14)
C70.060 (2)0.072 (2)0.059 (2)−0.0149 (18)0.0302 (18)0.0002 (19)
C80.070 (2)0.068 (2)0.065 (2)0.0000 (19)0.042 (2)0.0157 (19)
C90.064 (2)0.0580 (19)0.0363 (16)0.0142 (16)0.0257 (15)0.0160 (15)
C100.0446 (15)0.0382 (14)0.0251 (13)0.0128 (12)0.0133 (12)0.0049 (11)
C120.0256 (12)0.0374 (13)0.0217 (13)0.0014 (10)0.0073 (10)0.0003 (10)
C140.0326 (13)0.0360 (14)0.0288 (14)0.0089 (11)0.0105 (11)0.0032 (11)
C170.0296 (13)0.0460 (15)0.0220 (13)0.0051 (11)0.0034 (11)0.0096 (11)
C180.0305 (14)0.078 (2)0.0244 (15)−0.0055 (14)0.0053 (12)0.0011 (14)
C190.074 (3)0.063 (2)0.062 (3)−0.026 (2)0.003 (2)−0.0043 (19)
C200.0395 (18)0.125 (4)0.0326 (18)0.005 (2)0.0003 (15)0.007 (2)
S1—C21.799 (4)C17—C181.511 (5)
S1—C101.759 (3)C18—C191.528 (6)
O15—C141.221 (4)C18—C201.528 (5)
O16—C121.224 (3)C2—H2A0.9700
N11—C41.463 (4)C2—H2B0.9700
N11—C121.349 (3)C3—H3A0.9700
N13—C121.400 (4)C3—H3B0.9700
N13—C141.359 (3)C6—H60.9300
N13—C171.477 (3)C7—H70.9300
N11—H110.8600C8—H80.9300
C2—C31.521 (5)C9—H90.9300
C3—C41.535 (4)C17—H17A0.9700
C4—C51.519 (4)C17—H17B0.9700
C4—C141.534 (4)C18—H180.9800
C5—C61.393 (5)C19—H19A0.9600
C5—C101.404 (3)C19—H19B0.9600
C6—C71.380 (6)C19—H19C0.9600
C7—C81.381 (5)C20—H20A0.9600
C8—C91.378 (6)C20—H20B0.9600
C9—C101.388 (5)C20—H20C0.9600
C2—S1—C10102.93 (16)C3—C2—H2A109.00
C4—N11—C12112.6 (2)C3—C2—H2B109.00
C12—N13—C14111.5 (2)H2A—C2—H2B108.00
C12—N13—C17123.8 (2)C2—C3—H3A109.00
C14—N13—C17124.7 (2)C2—C3—H3B109.00
C12—N11—H11124.00C4—C3—H3A109.00
C4—N11—H11124.00C4—C3—H3B109.00
S1—C2—C3111.8 (3)H3A—C3—H3B108.00
C2—C3—C4112.3 (2)C5—C6—H6119.00
N11—C4—C3111.6 (3)C7—C6—H6119.00
C3—C4—C5113.4 (2)C6—C7—H7121.00
N11—C4—C5110.99 (19)C8—C7—H7120.00
N11—C4—C14100.64 (19)C7—C8—H8120.00
C5—C4—C14111.3 (2)C9—C8—H8120.00
C3—C4—C14108.2 (2)C8—C9—H9119.00
C4—C5—C10122.7 (3)C10—C9—H9119.00
C4—C5—C6119.4 (2)N13—C17—H17A109.00
C6—C5—C10117.9 (3)N13—C17—H17B109.00
C5—C6—C7122.6 (3)C18—C17—H17A109.00
C6—C7—C8118.9 (4)C18—C17—H17B109.00
C7—C8—C9119.8 (4)H17A—C17—H17B108.00
C8—C9—C10121.7 (3)C17—C18—H18108.00
S1—C10—C9115.7 (2)C19—C18—H18108.00
C5—C10—C9119.2 (3)C20—C18—H18108.00
S1—C10—C5125.1 (3)C18—C19—H19A109.00
N11—C12—N13107.6 (2)C18—C19—H19B109.00
O16—C12—N11128.0 (3)C18—C19—H19C110.00
O16—C12—N13124.4 (2)H19A—C19—H19B109.00
N13—C14—C4107.6 (2)H19A—C19—H19C109.00
O15—C14—N13126.6 (2)H19B—C19—H19C110.00
O15—C14—C4125.9 (2)C18—C20—H20A109.00
N13—C17—C18113.0 (2)C18—C20—H20B109.00
C19—C18—C20111.2 (3)C18—C20—H20C110.00
C17—C18—C19111.8 (3)H20A—C20—H20B109.00
C17—C18—C20108.5 (3)H20A—C20—H20C110.00
S1—C2—H2A109.00H20B—C20—H20C109.00
S1—C2—H2B109.00
C10—S1—C2—C3−37.5 (3)N11—C4—C14—N130.2 (3)
C2—S1—C10—C57.6 (3)C14—C4—C5—C10146.9 (3)
C2—S1—C10—C9−173.0 (3)N11—C4—C5—C676.0 (3)
C4—N11—C12—N132.7 (3)N11—C4—C5—C10−101.9 (3)
C4—N11—C12—O16−177.7 (3)C3—C4—C5—C6−157.4 (3)
C12—N11—C4—C5−119.6 (2)C3—C4—C5—C1024.6 (4)
C12—N11—C4—C14−1.8 (3)C3—C4—C14—O1562.5 (4)
C12—N11—C4—C3112.8 (3)C3—C4—C14—N13−117.0 (3)
C17—N13—C12—O16−0.9 (4)C5—C4—C14—O15−62.8 (4)
C14—N13—C12—N11−2.6 (3)C5—C4—C14—N13117.8 (2)
C12—N13—C14—C41.4 (3)C10—C5—C6—C7−0.6 (5)
C14—N13—C12—O16177.8 (3)C4—C5—C10—S1−1.6 (5)
C12—N13—C17—C18−99.0 (3)C4—C5—C6—C7−178.6 (3)
C14—N13—C17—C1882.5 (3)C4—C5—C10—C9179.0 (3)
C12—N13—C14—O15−178.0 (3)C6—C5—C10—S1−179.6 (3)
C17—N13—C14—C4−179.9 (2)C6—C5—C10—C91.0 (5)
C17—N13—C12—N11178.8 (2)C5—C6—C7—C8−0.2 (6)
C17—N13—C14—O150.7 (5)C6—C7—C8—C90.4 (7)
S1—C2—C3—C465.3 (3)C7—C8—C9—C100.1 (7)
C2—C3—C4—C5−57.9 (4)C8—C9—C10—C5−0.8 (6)
C2—C3—C4—C14178.1 (3)C8—C9—C10—S1179.8 (3)
C2—C3—C4—N1168.3 (3)N13—C17—C18—C1961.5 (3)
C14—C4—C5—C6−35.2 (4)N13—C17—C18—C20−175.6 (3)
N11—C4—C14—O15179.6 (3)
D—H···AD—HH···AD···AD—H···A
N11—H11···O16i0.862.032.850 (3)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N11—H11⋯O16i 0.862.032.850 (3)160

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Solid-phase synthesis of linear ureas tethered to hydantoins and thiohydantoins.

Authors:  Adel Nefzi; Marcello Giulianotti; Long Truong; Somkit Rattan; John M Ostresh; Richard A Houghten
Journal:  J Comb Chem       Date:  2002 Mar-Apr

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

4.  Crystal structure of 1-ethyl-spiro-[imid-az-olidine-4,1'-indane]-2,5-dione.

Authors:  Wahraan Mohammed Hussein; Cynthia E Theodore; S B Benaka Prasad; M Madaiah; S Naveen; N K Lokanath
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-08-01
  4 in total

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