Literature DB >> 25309215

Crystal structure of N-(1-allyl-3-chloro-1H-indazol-5-yl)-4-methyl-benzene-sulfonamide.

Hakima Chicha1, El Mostapha Rakib1, Mohamed Chigr1, Mohamed Saadi2, Lahcen El Ammari2.   

Abstract

The 3-chloro-1H-indazole system in the title mol-ecule, C17H16ClN3O2S, is almost planar, with the largest deviation from the mean plane being 0.029 (2) Å for one of the N atoms. This system is nearly perpendicular to the allyl chain, as indicated by the C-C-N-N torsion angle of -90.1 (6)° between them. The allyl group is split into two fragments, the major component has a site occupancy of 0.579 (7). The indazole system makes a dihedral angle of 47.53 (10)° with the plane through the benzene ring. In the crystal, mol-ecules are connected by N-H⋯O and C-H⋯O hydrogen bonds, forming a three-dimensional network.

Entities:  

Keywords:  benzene­sulfonamides; biological activity; crystal structure; hydrogen bonding

Year:  2014        PMID: 25309215      PMCID: PMC4186064          DOI: 10.1107/S1600536814018194

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of sulfonamides, see: El-Sayed, et al. (2011 ▶); Mustafa et al. (2012 ▶); Scozzafava et al. (2003 ▶). For similar compounds, see: Abbassi et al. (2012 ▶, 2013 ▶); Chicha et al. (2014 ▶).

Experimental

Crystal data

C17H16ClN3O2S M = 361.84 Orthorhombic, a = 8.1736 (12) Å b = 22.504 (4) Å c = 19.279 (3) Å V = 3546.2 (10) Å3 Z = 8 Mo Kα radiation μ = 0.35 mm−1 T = 296 K 0.40 × 0.36 × 0.31 mm

Data collection

Bruker X8 APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008 ▶) T min = 0.693, T max = 0.747 18362 measured reflections 3621 independent reflections 2327 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.123 S = 1.02 3621 reflections 225 parameters 4 restraints H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.26 e Å−3

Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814018194/tk5336sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814018194/tk5336Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814018194/tk5336Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814018194/tk5336fig1.tif Mol­ecular structure of the title compound with the atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are represented as small circles. Click here for additional data file. N . DOI: 10.1107/S1600536814018194/tk5336fig2.tif Crystal structure of the title compound, showing mol­ecules linked by N3–H3N⋯O1, C5–H5⋯O1 and C4–H4⋯O2 hydrogen bonds between mol­ecules. CCDC reference: 1018456 Additional supporting information: crystallographic information; 3D view; checkCIF report
C17H16ClN3O2SDx = 1.355 Mg m3
Mr = 361.84Melting point: 394 K
Orthorhombic, PbcnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 3621 reflections
a = 8.1736 (12) Åθ = 2.8–26.4°
b = 22.504 (4) ŵ = 0.35 mm1
c = 19.279 (3) ÅT = 296 K
V = 3546.2 (10) Å3Block, colourless
Z = 80.40 × 0.36 × 0.31 mm
F(000) = 1504
Bruker X8 APEX diffractometer3621 independent reflections
Radiation source: fine-focus sealed tube2327 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.051
φ and ω scansθmax = 26.4°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008)h = −9→10
Tmin = 0.693, Tmax = 0.747k = −28→26
18362 measured reflectionsl = −22→24
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.043H-atom parameters constrained
wR(F2) = 0.123w = 1/[σ2(Fo2) + (0.0557P)2 + 0.7269P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
3621 reflectionsΔρmax = 0.26 e Å3
225 parametersΔρmin = −0.26 e Å3
4 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0026 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.8260 (3)−0.03622 (11)0.08181 (12)0.0516 (6)
C20.8328 (3)0.02554 (10)0.06992 (11)0.0427 (5)
C30.9964 (3)0.04008 (11)0.08496 (12)0.0481 (6)
C41.0542 (3)0.09849 (12)0.07951 (13)0.0570 (7)
H41.16240.10810.08920.068*
C50.9446 (3)0.14053 (11)0.05939 (13)0.0532 (6)
H50.97930.17980.05580.064*
C60.7806 (3)0.12692 (10)0.04380 (11)0.0444 (5)
C70.7233 (3)0.06945 (10)0.04817 (11)0.0445 (6)
H70.61560.06020.03700.053*
C80.6222 (3)0.22836 (11)0.14802 (13)0.0503 (6)
C90.6865 (3)0.19241 (12)0.19974 (14)0.0628 (7)
H90.67950.15130.19610.075*
C100.7609 (4)0.21805 (15)0.25663 (15)0.0741 (8)
H100.80630.19390.29070.089*
C110.7691 (4)0.27915 (16)0.26378 (16)0.0756 (9)
C120.7046 (4)0.31338 (14)0.21193 (19)0.0830 (10)
H120.70970.35450.21620.100*
C130.6321 (3)0.28965 (12)0.15350 (16)0.0669 (8)
H130.59110.31410.11870.080*
C140.8448 (5)0.3061 (2)0.32849 (19)0.1179 (15)
H14A0.88180.27500.35860.177*
H14B0.76450.32980.35210.177*
H14C0.93580.33070.31560.177*
C151.2392 (3)−0.01960 (14)0.12649 (15)0.0755 (9)
H15A1.31110.00810.10290.091*
H15B1.2767−0.05970.11720.091*
C16A1.2386 (8)−0.0080 (6)0.2012 (2)0.0902 (19)0.579 (7)
H16A1.1739−0.03340.22760.108*0.579 (7)
C17A1.3154 (12)0.0324 (4)0.2354 (5)0.120 (2)0.579 (7)
H17A1.38230.05930.21220.144*0.579 (7)
H17B1.30390.03480.28330.144*0.579 (7)
C16B1.2961 (13)−0.0101 (9)0.1975 (3)0.0902 (19)0.421 (7)
H16B1.3979−0.02380.21190.108*0.421 (7)
C17B1.2008 (15)0.0178 (6)0.2393 (6)0.120 (2)0.421 (7)
H17C1.09940.03120.22410.144*0.421 (7)
H17D1.23330.02460.28490.144*0.421 (7)
N11.0722 (2)−0.01207 (10)0.10293 (11)0.0576 (6)
N20.9665 (3)−0.05905 (9)0.10217 (11)0.0593 (6)
N30.6711 (2)0.17352 (9)0.02206 (10)0.0510 (5)
H3N0.71400.20270.00590.061*
O10.4373 (2)0.24036 (8)0.03876 (10)0.0743 (6)
O20.44423 (19)0.14312 (8)0.09892 (10)0.0613 (5)
S10.52632 (7)0.19552 (3)0.07563 (3)0.0508 (2)
Cl10.65782 (9)−0.08137 (3)0.07145 (5)0.0776 (3)
U11U22U33U12U13U23
C10.0444 (14)0.0511 (15)0.0591 (16)0.0037 (11)−0.0066 (12)−0.0015 (11)
C20.0360 (12)0.0497 (14)0.0424 (12)0.0002 (10)−0.0015 (10)−0.0025 (10)
C30.0361 (13)0.0595 (15)0.0486 (14)0.0021 (11)−0.0009 (10)−0.0027 (11)
C40.0324 (13)0.0728 (18)0.0659 (17)−0.0071 (12)−0.0022 (12)−0.0017 (13)
C50.0449 (14)0.0543 (15)0.0605 (15)−0.0097 (12)0.0030 (12)0.0020 (11)
C60.0380 (13)0.0514 (14)0.0437 (13)−0.0018 (11)0.0008 (10)0.0035 (10)
C70.0326 (12)0.0537 (15)0.0471 (13)−0.0013 (10)−0.0013 (10)−0.0012 (10)
C80.0372 (13)0.0534 (16)0.0603 (16)−0.0031 (11)0.0080 (11)0.0041 (11)
C90.0652 (18)0.0606 (17)0.0625 (17)−0.0024 (14)0.0008 (14)0.0087 (13)
C100.0681 (19)0.099 (2)0.0556 (17)−0.0019 (18)0.0005 (15)0.0061 (16)
C110.0620 (18)0.102 (3)0.0632 (19)−0.0170 (18)0.0130 (16)−0.0167 (17)
C120.094 (2)0.064 (2)0.090 (2)−0.0176 (18)0.006 (2)−0.0170 (17)
C130.0691 (18)0.0497 (16)0.082 (2)−0.0021 (14)0.0029 (16)0.0027 (13)
C140.113 (3)0.162 (4)0.078 (2)−0.028 (3)0.007 (2)−0.041 (2)
C150.0471 (15)0.094 (2)0.086 (2)0.0195 (15)−0.0203 (15)−0.0028 (16)
C16A0.051 (5)0.108 (3)0.112 (3)0.026 (6)−0.053 (3)−0.003 (3)
C17A0.125 (7)0.150 (6)0.085 (4)−0.008 (6)−0.019 (5)−0.002 (4)
C16B0.051 (5)0.108 (3)0.112 (3)0.026 (6)−0.053 (3)−0.003 (3)
C17B0.125 (7)0.150 (6)0.085 (4)−0.008 (6)−0.019 (5)−0.002 (4)
N10.0400 (11)0.0674 (15)0.0655 (14)0.0090 (11)−0.0081 (10)−0.0028 (11)
N20.0556 (13)0.0575 (13)0.0649 (14)0.0090 (12)−0.0079 (11)−0.0014 (10)
N30.0487 (12)0.0504 (12)0.0540 (12)−0.0004 (9)0.0008 (10)0.0125 (9)
O10.0602 (12)0.0682 (12)0.0945 (14)0.0180 (10)−0.0207 (11)0.0137 (10)
O20.0408 (9)0.0583 (11)0.0848 (12)−0.0107 (8)0.0069 (9)0.0003 (9)
S10.0372 (3)0.0478 (4)0.0673 (4)0.0015 (3)−0.0050 (3)0.0078 (3)
Cl10.0639 (5)0.0553 (4)0.1137 (7)−0.0094 (3)−0.0186 (4)0.0066 (4)
C1—N21.318 (3)C12—H120.9300
C1—C21.410 (3)C13—H130.9300
C1—Cl11.721 (3)C14—H14A0.9600
C2—C71.398 (3)C14—H14B0.9600
C2—C31.407 (3)C14—H14C0.9600
C3—N11.371 (3)C15—N11.448 (3)
C3—C41.400 (3)C15—C16B1.461 (2)
C4—C51.359 (3)C15—C16A1.464 (2)
C4—H40.9300C15—H15A0.9700
C5—C61.407 (3)C15—H15B0.9700
C5—H50.9300C16A—C17A1.286 (2)
C6—C71.378 (3)C16A—H16A0.9300
C6—N31.441 (3)C17A—H17A0.9300
C7—H70.9300C17A—H17B0.9300
C8—C131.386 (3)C16B—C17B1.286 (2)
C8—C91.387 (3)C16B—H16B0.9300
C8—S11.763 (3)C17B—H17C0.9300
C9—C101.381 (4)C17B—H17D0.9300
C9—H90.9300N1—N21.366 (3)
C10—C111.384 (4)N3—S11.647 (2)
C10—H100.9300N3—H3N0.8060
C11—C121.368 (5)O1—S11.4329 (18)
C11—C141.519 (4)O2—S11.4291 (17)
C12—C131.380 (4)
N2—C1—C2113.4 (2)C11—C14—H14B109.5
N2—C1—Cl1120.0 (2)H14A—C14—H14B109.5
C2—C1—Cl1126.52 (19)C11—C14—H14C109.5
C7—C2—C3120.4 (2)H14A—C14—H14C109.5
C7—C2—C1136.1 (2)H14B—C14—H14C109.5
C3—C2—C1103.5 (2)N1—C15—C16B125.2 (5)
N1—C3—C4132.1 (2)N1—C15—C16A106.5 (3)
N1—C3—C2106.4 (2)C16B—C15—C16A18.8 (5)
C4—C3—C2121.5 (2)N1—C15—H15A110.4
C5—C4—C3116.9 (2)C16B—C15—H15A98.8
C5—C4—H4121.5C16A—C15—H15A110.4
C3—C4—H4121.5N1—C15—H15B110.4
C4—C5—C6122.5 (2)C16B—C15—H15B102.0
C4—C5—H5118.8C16A—C15—H15B110.4
C6—C5—H5118.8H15A—C15—H15B108.6
C7—C6—C5121.0 (2)C17A—C16A—C15128.9 (8)
C7—C6—N3119.3 (2)C17A—C16A—H16A115.5
C5—C6—N3119.7 (2)C15—C16A—H16A115.5
C6—C7—C2117.6 (2)C16A—C17A—H17A120.0
C6—C7—H7121.2C16A—C17A—H17B120.0
C2—C7—H7121.2H17A—C17A—H17B120.0
C13—C8—C9120.2 (3)C17B—C16B—C15117.8 (10)
C13—C8—S1120.3 (2)C17B—C16B—H16B121.1
C9—C8—S1119.5 (2)C15—C16B—H16B121.1
C10—C9—C8119.6 (3)C16B—C17B—H17C120.0
C10—C9—H9120.2C16B—C17B—H17D120.0
C8—C9—H9120.2H17C—C17B—H17D120.0
C9—C10—C11121.1 (3)N2—N1—C3111.97 (18)
C9—C10—H10119.5N2—N1—C15120.6 (2)
C11—C10—H10119.5C3—N1—C15127.2 (2)
C12—C11—C10117.9 (3)C1—N2—N1104.6 (2)
C12—C11—C14122.2 (3)C6—N3—S1118.87 (15)
C10—C11—C14119.9 (3)C6—N3—H3N115.8
C11—C12—C13123.0 (3)S1—N3—H3N108.1
C11—C12—H12118.5O2—S1—O1119.90 (11)
C13—C12—H12118.5O2—S1—N3106.65 (10)
C12—C13—C8118.2 (3)O1—S1—N3105.41 (11)
C12—C13—H13120.9O2—S1—C8107.81 (11)
C8—C13—H13120.9O1—S1—C8108.85 (12)
C11—C14—H14A109.5N3—S1—C8107.64 (10)
D—H···AD—HH···AD···AD—H···A
N3—H3N···O1i0.812.393.140 (3)155
C4—H4···O2ii0.932.443.364 (3)171
C5—H5···O1i0.932.583.282 (3)132
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3N⋯O1i 0.812.393.140 (3)155
C4—H4⋯O2ii 0.932.443.364 (3)171
C5—H5⋯O1i 0.932.583.282 (3)132

Symmetry codes: (i) ; (ii) .

  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Anticancer and antiviral sulfonamides.

Authors:  Andrea Scozzafava; Takashi Owa; Antonio Mastrolorenzo; Claudiu T Supuran
Journal:  Curr Med Chem       Date:  2003-06       Impact factor: 4.530

3.  Synthesis of new sulfonamides as lipoxygenase inhibitors.

Authors:  Ghulam Mustafa; Islam Ullah Khan; Muhammad Ashraf; Iftikhar Afzal; Sohail Anjum Shahzad; Muhammad Shafiq
Journal:  Bioorg Med Chem       Date:  2012-03-03       Impact factor: 3.641

4.  Synthesis and antitumor activity of new sulfonamide derivatives of thiadiazolo[3,2-a]pyrimidines.

Authors:  Nadia S El-Sayed; Eman R El-Bendary; Saadia M El-Ashry; Mohammed M El-Kerdawy
Journal:  Eur J Med Chem       Date:  2011-05-30       Impact factor: 6.514

5.  Synthesis, antiproliferative and apoptotic activities of N-(6(4)-indazolyl)-benzenesulfonamide derivatives as potential anticancer agents.

Authors:  Najat Abbassi; Hakima Chicha; El Mostapha Rakib; Abdellah Hannioui; Mdaghri Alaoui; Abdelouahed Hajjaji; Detlef Geffken; Cinzia Aiello; Rosaria Gangemi; Camillo Rosano; Maurizio Viale
Journal:  Eur J Med Chem       Date:  2012-09-17       Impact factor: 6.514

6.  N-(3-Chloro-1-methyl-1H-indazol-5-yl)-4-methylbenzene-sulfonamide.

Authors:  Hakima Chicha; El Mostapha Rakib; Ouafa Amiri; Mohamed Saadi; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-01-22

7.  Ethyl 3-[6-(4-meth-oxy-benzene-sulfon-amido)-2H-indazol-2-yl]propano-ate monohydrate.

Authors:  Najat Abbassi; El Mostapha Rakib; Abdellah Hannioui; Mohamed Saadi; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-09

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.