Literature DB >> 25309204

Crystal structure of 1-benzoyl-3-(4-fluoro-phen-yl)thio-urea.

Rabab Sharaf Jassas1, Abdullah M Asiri2, Muhammad Nadeem Arshad2, Mohie E M Zayed1, Ghulam Mustafa3.   

Abstract

The title compound, C14H11FN2OS, contains two mol-ecules (A and B) in the asymmetric unit, with different conformations. In mol-ecule A, the dihedral angles between the central thio-urea grouping and the phenyl and fluoro-benzene rings are 28.77 (8) and 41.82 (8)°, respectively, and the dihedral angle between the ring planes is 70.02 (9)°. Equivalent data for mol-ecule B are 8.46 (8), 47.78 (8) and 52.99 (9)°, respectively. Both mol-ecules feature an intra-molecular N-H⋯O hydrogen bond, which closes an S(6) ring. In the crystal, A+B dimers linked by pairs of N-H⋯S hydrogen bonds generate R 2 (2)(8) loops.

Entities:  

Keywords:  amide; crystal structure; hydrogen-bonded dimers; thio­urea

Year:  2014        PMID: 25309204      PMCID: PMC4186107          DOI: 10.1107/S1600536814018376

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Othman et al. (2010 ▶); Rauf et al. (2012 ▶) Saeed & Flörke (2006a ▶, 2006b ▶); Saeed et al. (2011 ▶); Yamin & Yusof (2003a ▶,b ▶).

Experimental

Crystal data

C14H11FN2OS M = 274.31 Triclinic, a = 9.6265 (4) Å b = 11.1329 (4) Å c = 13.8252 (5) Å α = 110.646 (3)° β = 100.708 (3)° γ = 102.762 (3)° V = 1294.58 (9) Å3 Z = 4 Cu Kα radiation μ = 2.28 mm−1 T = 296 K 0.36 × 0.28 × 0.22 mm

Data collection

Agilent SuperNova, Dual, Cu at zero, Atlas, CCD diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012 ▶) T min = 0.817, T max = 1.000 11636 measured reflections 5354 independent reflections 4757 reflections with I > 2σ(I) R int = 0.015

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.102 S = 1.03 5354 reflections 346 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.35 e Å−3

Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and X-SEED (Barbour, 2001 ▶). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536814018376/hb7271sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814018376/hb7271Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814018376/hb7271Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814018376/hb7271fig1.tif The mol­ecular structure of (I) with 50% displacement ellipsoids. Click here for additional data file. . DOI: 10.1107/S1600536814018376/hb7271fig2.tif The inter and intra­molecular hydrogen bonding shown using dashed lines. CCDC reference: 1018979 Additional supporting information: crystallographic information; 3D view; checkCIF report
C14H11FN2OSV = 1294.58 (9) Å3
Mr = 274.31Z = 4
Triclinic, P1F(000) = 568
Hall symbol: -P 1Dx = 1.407 Mg m3
a = 9.6265 (4) ÅCu Kα radiation, λ = 1.54184 Å
b = 11.1329 (4) ŵ = 2.28 mm1
c = 13.8252 (5) ÅT = 296 K
α = 110.646 (3)°Block, colorless
β = 100.708 (3)°0.36 × 0.28 × 0.22 mm
γ = 102.762 (3)°
Agilent SuperNova, Dual, Cu at zero, Atlas, CCD diffractometer5354 independent reflections
Radiation source: SuperNova (Cu) X-ray Source4757 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.015
ω scansθmax = 76.5°, θmin = 4.4°
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012)h = −12→11
Tmin = 0.817, Tmax = 1.000k = −13→12
11636 measured reflectionsl = −11→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.102H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0538P)2 + 0.268P] where P = (Fo2 + 2Fc2)/3
5354 reflections(Δ/σ)max = 0.001
346 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.35 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.10971 (5)0.71506 (4)0.58605 (3)0.05533 (12)
S20.99550 (5)1.23786 (4)0.68544 (4)0.06368 (14)
F10.42593 (15)0.61882 (14)1.00154 (8)0.0807 (3)
F21.30145 (16)1.00061 (14)1.00287 (10)0.0960 (4)
O10.30327 (17)0.41067 (15)0.38650 (9)0.0768 (4)
O20.67259 (14)0.81808 (11)0.48289 (10)0.0626 (3)
N10.28430 (16)0.55698 (14)0.57813 (10)0.0533 (3)
N20.17580 (15)0.56414 (13)0.41761 (9)0.0483 (3)
N30.91440 (14)0.97471 (12)0.64274 (10)0.0513 (3)
N40.78454 (14)1.03902 (13)0.52148 (10)0.0504 (3)
C10.19583 (17)0.60743 (14)0.52881 (11)0.0454 (3)
C20.31803 (16)0.57760 (15)0.68871 (11)0.0456 (3)
C30.3556 (2)0.70415 (16)0.77249 (13)0.0559 (4)
H3A0.35680.77970.75780.067*
C40.39115 (19)0.71680 (17)0.87823 (12)0.0586 (4)
H4A0.41530.80060.93540.070*
C50.39026 (18)0.60464 (18)0.89724 (12)0.0543 (4)
C60.3546 (2)0.47939 (18)0.81661 (14)0.0583 (4)
H60.35480.40460.83210.070*
C70.31813 (18)0.46637 (16)0.71082 (12)0.0526 (3)
H70.29350.38190.65440.063*
C80.22178 (18)0.46495 (16)0.35187 (12)0.0505 (3)
C90.16680 (16)0.42877 (14)0.23398 (11)0.0438 (3)
C100.02856 (17)0.43219 (15)0.18570 (12)0.0475 (3)
H10−0.03310.46030.22740.057*
C11−0.01708 (19)0.39336 (17)0.07491 (13)0.0549 (4)
H11−0.11000.39490.04230.066*
C120.0745 (2)0.35248 (17)0.01270 (12)0.0571 (4)
H120.04380.3275−0.06140.069*
C130.2114 (2)0.34884 (18)0.06075 (13)0.0585 (4)
H130.27330.32160.01890.070*
C140.25746 (18)0.38540 (16)0.17091 (12)0.0524 (3)
H140.34910.38090.20270.063*
C150.89789 (16)1.07566 (15)0.61595 (12)0.0466 (3)
C161.01650 (17)0.98710 (14)0.73730 (12)0.0470 (3)
C171.16625 (18)1.05699 (17)0.76648 (13)0.0541 (4)
H171.20191.10110.72590.065*
C181.2625 (2)1.06121 (19)0.85570 (15)0.0637 (4)
H181.36331.10820.87610.076*
C191.2071 (2)0.99480 (18)0.91389 (14)0.0635 (4)
C201.0604 (2)0.92345 (18)0.88583 (16)0.0668 (5)
H201.02580.87850.92620.080*
C210.9641 (2)0.91938 (16)0.79610 (15)0.0584 (4)
H210.86380.87080.77540.070*
C220.67355 (17)0.91742 (15)0.46324 (12)0.0482 (3)
C230.55378 (16)0.91245 (15)0.37529 (12)0.0475 (3)
C240.53131 (18)1.02572 (19)0.36376 (15)0.0609 (4)
H240.59281.11140.41260.073*
C250.4163 (2)1.0108 (2)0.27875 (18)0.0735 (5)
H250.40171.08690.27050.088*
C260.3241 (2)0.8846 (2)0.20673 (16)0.0721 (5)
H260.24830.87550.14950.086*
C270.3438 (2)0.7719 (2)0.21907 (15)0.0713 (5)
H270.28030.68660.17090.086*
C280.45776 (19)0.78475 (18)0.30293 (14)0.0610 (4)
H280.47050.70820.31120.073*
H20.11720.60950.38420.073*
H40.78191.10670.49740.073*
H30.83900.88780.59640.073*
H10.316 (2)0.497 (2)0.5386 (17)0.073*
U11U22U33U12U13U23
S10.0705 (3)0.0524 (2)0.0459 (2)0.02927 (18)0.02121 (17)0.01513 (16)
S20.0710 (3)0.0427 (2)0.0561 (2)0.00407 (18)−0.00598 (19)0.01671 (17)
F10.0990 (8)0.1050 (9)0.0398 (5)0.0368 (7)0.0174 (5)0.0300 (5)
F20.1099 (10)0.0882 (9)0.0716 (7)0.0323 (7)−0.0158 (7)0.0321 (7)
O10.1027 (10)0.0990 (10)0.0416 (6)0.0699 (9)0.0178 (6)0.0220 (6)
O20.0697 (7)0.0427 (6)0.0563 (7)0.0099 (5)−0.0017 (5)0.0133 (5)
N10.0669 (8)0.0583 (8)0.0355 (6)0.0310 (7)0.0137 (6)0.0137 (5)
N20.0616 (7)0.0484 (7)0.0353 (6)0.0238 (6)0.0130 (5)0.0140 (5)
N30.0537 (7)0.0411 (6)0.0465 (7)0.0127 (5)0.0024 (5)0.0112 (5)
N40.0534 (7)0.0444 (6)0.0437 (6)0.0091 (5)0.0043 (5)0.0158 (5)
C10.0529 (8)0.0406 (7)0.0372 (7)0.0126 (6)0.0117 (6)0.0118 (5)
C20.0477 (7)0.0486 (8)0.0357 (7)0.0153 (6)0.0101 (6)0.0125 (6)
C30.0672 (10)0.0456 (8)0.0446 (8)0.0137 (7)0.0086 (7)0.0131 (6)
C40.0646 (10)0.0559 (9)0.0372 (7)0.0166 (7)0.0060 (7)0.0045 (6)
C50.0535 (8)0.0705 (10)0.0363 (7)0.0190 (7)0.0121 (6)0.0194 (7)
C60.0665 (10)0.0565 (9)0.0523 (9)0.0174 (8)0.0129 (7)0.0260 (7)
C70.0610 (9)0.0454 (8)0.0419 (7)0.0172 (7)0.0091 (6)0.0098 (6)
C80.0583 (9)0.0552 (8)0.0385 (7)0.0255 (7)0.0136 (6)0.0152 (6)
C90.0513 (7)0.0404 (7)0.0373 (7)0.0153 (6)0.0124 (6)0.0130 (5)
C100.0515 (8)0.0466 (7)0.0440 (7)0.0179 (6)0.0142 (6)0.0163 (6)
C110.0580 (9)0.0562 (9)0.0472 (8)0.0172 (7)0.0067 (7)0.0220 (7)
C120.0724 (10)0.0552 (9)0.0378 (7)0.0145 (8)0.0122 (7)0.0174 (7)
C130.0662 (10)0.0641 (10)0.0443 (8)0.0213 (8)0.0246 (7)0.0162 (7)
C140.0520 (8)0.0582 (9)0.0449 (8)0.0206 (7)0.0148 (6)0.0164 (7)
C150.0488 (7)0.0439 (7)0.0411 (7)0.0128 (6)0.0100 (6)0.0130 (6)
C160.0516 (8)0.0388 (7)0.0444 (7)0.0181 (6)0.0095 (6)0.0100 (6)
C170.0512 (8)0.0591 (9)0.0493 (8)0.0194 (7)0.0151 (7)0.0177 (7)
C180.0534 (9)0.0623 (10)0.0594 (10)0.0188 (8)0.0046 (7)0.0125 (8)
C190.0767 (11)0.0530 (9)0.0506 (9)0.0284 (8)−0.0005 (8)0.0143 (7)
C200.0863 (13)0.0541 (9)0.0666 (11)0.0264 (9)0.0169 (9)0.0322 (8)
C210.0587 (9)0.0454 (8)0.0697 (10)0.0152 (7)0.0107 (8)0.0268 (7)
C220.0510 (8)0.0445 (7)0.0404 (7)0.0131 (6)0.0115 (6)0.0096 (6)
C230.0444 (7)0.0531 (8)0.0406 (7)0.0131 (6)0.0142 (6)0.0143 (6)
C240.0480 (8)0.0605 (10)0.0698 (11)0.0093 (7)0.0105 (7)0.0298 (8)
C250.0551 (10)0.0889 (14)0.0904 (14)0.0205 (9)0.0156 (9)0.0564 (12)
C260.0524 (9)0.1022 (15)0.0569 (10)0.0162 (10)0.0074 (8)0.0364 (10)
C270.0607 (10)0.0747 (12)0.0524 (10)0.0125 (9)0.0015 (8)0.0093 (9)
C280.0578 (9)0.0569 (9)0.0507 (9)0.0143 (7)0.0055 (7)0.0093 (7)
S1—C11.6623 (15)C10—C111.388 (2)
S2—C151.6608 (15)C10—H100.9300
F1—C51.3616 (17)C11—C121.381 (2)
F2—C191.3585 (19)C11—H110.9300
O1—C81.2181 (19)C12—C131.377 (2)
O2—C221.2269 (19)C12—H120.9300
N1—C11.3309 (19)C13—C141.383 (2)
N1—C21.4250 (18)C13—H130.9300
N1—H10.86 (2)C14—H140.9300
N2—C81.3781 (19)C16—C211.379 (2)
N2—C11.3998 (18)C16—C171.383 (2)
N2—H20.9905C17—C181.378 (2)
N3—C151.3327 (19)C17—H170.9300
N3—C161.4246 (19)C18—C191.372 (3)
N3—H30.9761C18—H180.9300
N4—C221.3767 (19)C19—C201.364 (3)
N4—C151.4004 (19)C20—C211.384 (2)
N4—H40.9287C20—H200.9300
C2—C71.376 (2)C21—H210.9300
C2—C31.388 (2)C22—C231.488 (2)
C3—C41.386 (2)C23—C241.383 (2)
C3—H3A0.9300C23—C281.396 (2)
C4—C51.362 (2)C24—C251.390 (3)
C4—H4A0.9300C24—H240.9300
C5—C61.362 (2)C25—C261.374 (3)
C6—C71.386 (2)C25—H250.9300
C6—H60.9300C26—C271.372 (3)
C7—H70.9300C26—H260.9300
C8—C91.4904 (19)C27—C281.382 (2)
C9—C141.388 (2)C27—H270.9300
C9—C101.389 (2)C28—H280.9300
C1—N1—C2127.39 (13)C12—C13—C14120.38 (15)
C1—N1—H1117.5 (14)C12—C13—H13119.8
C2—N1—H1114.6 (14)C14—C13—H13119.8
C8—N2—C1127.90 (12)C13—C14—C9119.97 (15)
C8—N2—H2118.4C13—C14—H14120.0
C1—N2—H2113.6C9—C14—H14120.0
C15—N3—C16126.08 (12)N3—C15—N4115.58 (13)
C15—N3—H3114.0N3—C15—S2126.05 (11)
C16—N3—H3119.4N4—C15—S2118.34 (11)
C22—N4—C15127.94 (13)C21—C16—C17120.04 (15)
C22—N4—H4116.5C21—C16—N3118.07 (14)
C15—N4—H4115.5C17—C16—N3121.74 (14)
N1—C1—N2115.29 (13)C18—C17—C16119.95 (16)
N1—C1—S1126.60 (11)C18—C17—H17120.0
N2—C1—S1118.10 (11)C16—C17—H17120.0
C7—C2—C3120.12 (14)C19—C18—C17118.83 (17)
C7—C2—N1117.19 (13)C19—C18—H18120.6
C3—C2—N1122.63 (14)C17—C18—H18120.6
C4—C3—C2119.32 (15)F2—C19—C20118.72 (18)
C4—C3—H3A120.3F2—C19—C18118.92 (18)
C2—C3—H3A120.3C20—C19—C18122.36 (16)
C5—C4—C3119.02 (15)C19—C20—C21118.61 (17)
C5—C4—H4A120.5C19—C20—H20120.7
C3—C4—H4A120.5C21—C20—H20120.7
F1—C5—C6118.81 (16)C16—C21—C20120.20 (17)
F1—C5—C4118.31 (15)C16—C21—H21119.9
C6—C5—C4122.88 (15)C20—C21—H21119.9
C5—C6—C7118.19 (15)O2—C22—N4121.91 (14)
C5—C6—H6120.9O2—C22—C23121.47 (14)
C7—C6—H6120.9N4—C22—C23116.62 (13)
C2—C7—C6120.45 (14)C24—C23—C28119.36 (15)
C2—C7—H7119.8C24—C23—C22123.87 (14)
C6—C7—H7119.8C28—C23—C22116.76 (14)
O1—C8—N2123.06 (13)C23—C24—C25119.67 (17)
O1—C8—C9121.47 (13)C23—C24—H24120.2
N2—C8—C9115.47 (13)C25—C24—H24120.2
C14—C9—C10119.75 (13)C26—C25—C24120.52 (19)
C14—C9—C8117.40 (13)C26—C25—H25119.7
C10—C9—C8122.81 (13)C24—C25—H25119.7
C11—C10—C9119.64 (14)C27—C26—C25120.09 (18)
C11—C10—H10120.2C27—C26—H26120.0
C9—C10—H10120.2C25—C26—H26120.0
C12—C11—C10120.43 (15)C26—C27—C28120.17 (18)
C12—C11—H11119.8C26—C27—H27119.9
C10—C11—H11119.8C28—C27—H27119.9
C13—C12—C11119.81 (14)C27—C28—C23120.16 (18)
C13—C12—H12120.1C27—C28—H28119.9
C11—C12—H12120.1C23—C28—H28119.9
C2—N1—C1—N2−176.44 (14)C16—N3—C15—N4−176.80 (14)
C2—N1—C1—S13.8 (2)C16—N3—C15—S21.6 (2)
C8—N2—C1—N18.3 (2)C22—N4—C15—N311.7 (2)
C8—N2—C1—S1−171.98 (13)C22—N4—C15—S2−166.79 (13)
C1—N1—C2—C7136.52 (17)C15—N3—C16—C21132.89 (17)
C1—N1—C2—C3−46.1 (2)C15—N3—C16—C17−51.5 (2)
C7—C2—C3—C4−0.8 (3)C21—C16—C17—C18−1.3 (2)
N1—C2—C3—C4−178.15 (15)N3—C16—C17—C18−176.91 (14)
C2—C3—C4—C50.9 (3)C16—C17—C18—C190.3 (3)
C3—C4—C5—F1179.79 (15)C17—C18—C19—F2−178.97 (16)
C3—C4—C5—C6−0.5 (3)C17—C18—C19—C200.8 (3)
F1—C5—C6—C7179.82 (15)F2—C19—C20—C21179.03 (16)
C4—C5—C6—C70.2 (3)C18—C19—C20—C21−0.7 (3)
C3—C2—C7—C60.4 (2)C17—C16—C21—C201.4 (2)
N1—C2—C7—C6177.91 (15)N3—C16—C21—C20177.13 (15)
C5—C6—C7—C2−0.1 (3)C19—C20—C21—C16−0.4 (3)
C1—N2—C8—O1−8.6 (3)C15—N4—C22—O2−8.8 (3)
C1—N2—C8—C9172.24 (14)C15—N4—C22—C23170.92 (14)
O1—C8—C9—C14−29.9 (2)O2—C22—C23—C24165.86 (16)
N2—C8—C9—C14149.29 (15)N4—C22—C23—C24−13.8 (2)
O1—C8—C9—C10147.74 (18)O2—C22—C23—C28−12.5 (2)
N2—C8—C9—C10−33.1 (2)N4—C22—C23—C28167.86 (14)
C14—C9—C10—C11−0.6 (2)C28—C23—C24—C25−1.8 (3)
C8—C9—C10—C11−178.13 (14)C22—C23—C24—C25179.94 (16)
C9—C10—C11—C12−0.5 (2)C23—C24—C25—C260.6 (3)
C10—C11—C12—C130.7 (3)C24—C25—C26—C270.8 (3)
C11—C12—C13—C140.3 (3)C25—C26—C27—C28−1.0 (3)
C12—C13—C14—C9−1.4 (3)C26—C27—C28—C23−0.3 (3)
C10—C9—C14—C131.5 (2)C24—C23—C28—C271.6 (3)
C8—C9—C14—C13179.19 (15)C22—C23—C28—C27−179.96 (16)
D—H···AD—HH···AD···AD—H···A
N2—H2···S2i0.992.563.5433 (13)170
N4—H4···S1i0.932.743.5976 (13)154
N1—H1···O10.86 (2)1.95 (2)2.6408 (17)137.5 (19)
N3—H3···O20.981.812.6307 (17)139
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2⋯S2i 0.992.563.5433 (13)170
N4—H4⋯S1i 0.932.743.5976 (13)154
N1—H1⋯O10.86 (2)1.95 (2)2.6408 (17)137.5 (19)
N3—H3⋯O20.981.812.6307 (17)139

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N-(4-Chloro-benzo-yl)-N'-(3-fluoro-phen-yl)thio-urea.

Authors:  Nur Eliyanti A Othman; M Ibrahim M Tahir; Bohari M Yamin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-11

3.  1-Benzoyl-3-(2,4,5-trichloro-phen-yl)thio-urea.

Authors:  M Khawar Rauf; Masahiro Ebihara; Amin Badshah
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-14

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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