Literature DB >> 25309197

Crystal structure of N-[3-(2-chloro-benzo-yl)-5-ethyl-thio-phen-2-yl]-2-[(E)-(2-hy-droxy-benzyl-idene)amino]-acetamide.

Manpreet Kaur1, Jerry P Jasinski2, Channappa N Kavitha1, Hemmige S Yathirajan1, K Byrappa3.   

Abstract

In the title compound, C22H19ClN2O3S, the dihedral angle between the mean planes of the thio-phene ring and the chloro-phenyl and hy-droxy-phenyl rings are 70.1 (1) and 40.2 (4)°, respectively. The benzene rings are twisted with respect to each other by 88.9 (3)°. The imine bond lies in an E conformation. Intra-molecular O-H⋯N and N-H⋯O hydrogen bonds each generate S(6) ring motifs. In the crystal, weak C-H⋯O inter-actions link the mol-ecules, forming chains along the c axis and zigzag chains along the b axis, generating sheets lying parallel to (100).

Entities:  

Keywords:  Schiff bases; crystal structure; hydrogen bonding; thio­phene derivatives

Year:  2014        PMID: 25309197      PMCID: PMC4186110          DOI: 10.1107/S1600536814018224

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to thio­phene derivatives, see: Molvi et al. (2007 ▶); Rai et al. (2008 ▶). For applications of 2-amino­thio­phene derivatives, see: Puterová et al. (2010 ▶); Cannito et al. (1990 ▶); Nikolakopoulos et al. (2006 ▶). For biological and industrial applications of Schiff bases, see: Desai et al. (2001 ▶); Singh & Dash (1988 ▶); Aydogan et al. (2001 ▶); Taggi et al. (2002 ▶). For a related structure, see: Fun et al. (2012 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C22H19ClN2O3S M = 426.90 Monoclinic, a = 9.7888 (2) Å b = 16.9476 (3) Å c = 12.2863 (3) Å β = 90.6654 (19)° V = 2038.11 (7) Å3 Z = 4 Cu Kα radiation μ = 2.84 mm−1 T = 173 K 0.32 × 0.28 × 0.18 mm

Data collection

Agilent Xcalibur Eos Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012 ▶) T min = 0.802, T max = 1.000 14124 measured reflections 3909 independent reflections 3459 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.102 S = 1.02 3909 reflections 264 parameters H-atom parameters constrained Δρmax = 0.42 e Å−3 Δρmin = −0.29 e Å−3

Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Agilent, 2012 ▶); program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007 ▶); program(s) used to refine structure: SHELXL2012 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814018224/zs2311sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814018224/zs2311Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814018224/zs2311Isup3.cml Click here for additional data file. 22 19 2 3 . DOI: 10.1107/S1600536814018224/zs2311fig1.tif ORTEP drawing of C22H19N2O3SCl showing the labeling scheme of the mol­ecule with 30% probability displacement ellipsoids. Dashed lines inidicate O—H⋯N and N—H⋯O intra­molecular hydrogen bonds. Click here for additional data file. 22 19 2 3 a b c . DOI: 10.1107/S1600536814018224/zs2311fig2.tif Mol­ecular packing for C22H19ClN2O3S in the unit cell viewed along the a axis. Dashed lines indicate weak C—H⋯O inter­molecular inter­actions which inter­link the mol­ecules forming chains along the b and c axes. H atoms not involved in hydrogen- bonding have been removed for clarity. CCDC reference: 1018596 Additional supporting information: crystallographic information; 3D view; checkCIF report
C22H19ClN2O3SF(000) = 888
Mr = 426.90Dx = 1.391 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54184 Å
a = 9.7888 (2) ÅCell parameters from 6410 reflections
b = 16.9476 (3) Åθ = 4.4–71.5°
c = 12.2863 (3) ŵ = 2.84 mm1
β = 90.6654 (19)°T = 173 K
V = 2038.11 (7) Å3Irregular, pale yellow
Z = 40.32 × 0.28 × 0.18 mm
Agilent Xcalibur Eos Gemini diffractometer3909 independent reflections
Radiation source: Enhance (Cu) X-ray Source3459 reflections with I > 2σ(I)
Detector resolution: 16.0416 pixels mm-1Rint = 0.028
ω scansθmax = 71.4°, θmin = 4.5°
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012)h = −12→10
Tmin = 0.802, Tmax = 1.000k = −15→20
14124 measured reflectionsl = −15→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H-atom parameters constrained
wR(F2) = 0.102w = 1/[σ2(Fo2) + (0.0595P)2 + 0.7231P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.001
3909 reflectionsΔρmax = 0.42 e Å3
264 parametersΔρmin = −0.29 e Å3
0 restraints
Experimental. 1H NMR (400 MHz, CDCl3): δ 12.39 (s, 1H), 12.18 (s, 1H), 8.51 (s, 1H), 7.45-7.28 (m, 6H), 7.06 (d, J = 8.4 Hz, 1H), 6.92 (t, J = 7.6 Hz, 1H), 6.38 (d, J = 1.2 Hz, 1H), 4.61 (s, 2H), 2.70 (q, J = 7.6 Hz, 2H), 1.27-1.23 (m, 3H).13C NMR (400 MHz, CDCl3): δ 191.0, 169.4, 166.8, 160.7, 148.4, 139.4, 137.4, 133.3, 132.3, 130.7, 130.5, 129.9, 128.3, 126.6, 121.3, 121.2, 121.1, 119.0, 118.4, 117.4, 62.8, 22.8, 15.5. MS: m/z = 426.91 (Calculated), m/z = 426.94 [M]+ (found).
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
Cl10.51629 (5)0.31401 (3)0.21556 (4)0.04758 (15)
S10.72524 (4)0.53992 (2)−0.03408 (3)0.03034 (13)
O10.90220 (15)0.32692 (8)0.14607 (11)0.0450 (4)
O20.89582 (15)0.48587 (9)−0.19425 (12)0.0488 (4)
O31.20084 (14)0.26518 (8)0.07197 (10)0.0389 (3)
H31.16190.29590.03040.058*
N10.89927 (14)0.41330 (9)−0.04031 (11)0.0298 (3)
H10.93530.3731−0.00840.036*
N21.09746 (14)0.31536 (9)−0.11697 (11)0.0296 (3)
C10.81400 (18)0.37146 (11)0.18143 (14)0.0337 (4)
C20.75997 (17)0.43810 (10)0.12005 (14)0.0301 (4)
C30.65870 (17)0.49297 (10)0.15660 (14)0.0312 (4)
H3A0.61720.48930.22410.037*
C40.62912 (17)0.55044 (10)0.08380 (14)0.0303 (4)
C50.80425 (17)0.45664 (10)0.01659 (14)0.0277 (3)
C60.76476 (19)0.35931 (11)0.29613 (14)0.0347 (4)
C70.6345 (2)0.33302 (10)0.31984 (15)0.0361 (4)
C80.5958 (2)0.31975 (11)0.42645 (17)0.0459 (5)
H80.50780.30250.44160.055*
C90.6891 (3)0.33232 (14)0.50999 (17)0.0542 (6)
H90.66420.32260.58160.065*
C100.8190 (3)0.35918 (16)0.48780 (18)0.0579 (6)
H100.88110.36790.54430.069*
C110.8567 (2)0.37316 (14)0.38070 (17)0.0479 (5)
H110.94380.39190.36580.058*
C120.93954 (17)0.42990 (11)−0.14303 (14)0.0325 (4)
C131.04302 (19)0.37442 (12)−0.19171 (14)0.0366 (4)
H13A1.00070.3476−0.25310.044*
H13B1.11840.4054−0.21930.044*
C141.13375 (17)0.24926 (10)−0.15744 (13)0.0288 (3)
H141.11910.2404−0.23140.035*
C151.19709 (17)0.18724 (10)−0.09226 (14)0.0285 (3)
C161.22675 (17)0.19676 (10)0.01912 (13)0.0289 (3)
C171.28505 (19)0.13503 (12)0.07805 (15)0.0376 (4)
H171.30400.14120.15190.045*
C181.3150 (2)0.06443 (12)0.02676 (18)0.0461 (5)
H181.35420.02340.06650.055*
C191.2869 (2)0.05440 (12)−0.08316 (19)0.0483 (5)
H191.30710.0068−0.11710.058*
C201.2291 (2)0.11509 (11)−0.14174 (15)0.0387 (4)
H201.21090.1082−0.21560.046*
C210.52840 (19)0.61717 (10)0.09042 (17)0.0373 (4)
H21A0.47030.61630.02590.045*
H21B0.57800.66670.09070.045*
C220.43888 (19)0.61370 (11)0.19068 (16)0.0387 (4)
H22A0.49480.61930.25490.058*
H22B0.39220.56390.19270.058*
H22C0.37310.65570.18770.058*
U11U22U33U12U13U23
Cl10.0494 (3)0.0435 (3)0.0499 (3)−0.0040 (2)0.0038 (2)−0.0039 (2)
S10.0306 (2)0.0277 (2)0.0327 (2)0.00170 (15)−0.00142 (16)0.00588 (15)
O10.0500 (8)0.0504 (8)0.0350 (7)0.0261 (6)0.0130 (6)0.0114 (6)
O20.0476 (8)0.0570 (9)0.0421 (8)0.0170 (7)0.0090 (6)0.0233 (7)
O30.0495 (8)0.0438 (7)0.0234 (6)0.0149 (6)−0.0037 (5)−0.0071 (5)
N10.0283 (7)0.0330 (7)0.0281 (7)0.0051 (6)0.0024 (5)0.0060 (6)
N20.0289 (7)0.0377 (8)0.0222 (7)0.0016 (6)0.0019 (5)0.0006 (6)
C10.0326 (9)0.0373 (9)0.0313 (9)0.0087 (7)0.0046 (7)0.0046 (7)
C20.0282 (8)0.0329 (9)0.0292 (8)0.0048 (7)0.0022 (6)0.0026 (7)
C30.0300 (8)0.0319 (8)0.0318 (9)0.0039 (7)0.0013 (7)0.0003 (7)
C40.0290 (8)0.0273 (8)0.0346 (9)0.0004 (6)−0.0021 (7)−0.0009 (7)
C50.0263 (8)0.0279 (8)0.0287 (8)−0.0002 (6)−0.0025 (6)0.0032 (6)
C60.0397 (9)0.0348 (9)0.0298 (9)0.0162 (7)0.0055 (7)0.0061 (7)
C70.0450 (10)0.0277 (8)0.0358 (9)0.0076 (7)0.0076 (8)0.0017 (7)
C80.0620 (13)0.0324 (9)0.0438 (11)0.0026 (9)0.0207 (10)0.0019 (8)
C90.0804 (17)0.0517 (13)0.0308 (10)0.0159 (11)0.0193 (10)0.0085 (9)
C100.0647 (15)0.0753 (16)0.0335 (11)0.0231 (12)−0.0056 (10)0.0055 (10)
C110.0395 (10)0.0667 (14)0.0376 (10)0.0179 (9)0.0027 (8)0.0057 (9)
C120.0276 (8)0.0414 (10)0.0284 (8)0.0007 (7)0.0002 (6)0.0081 (7)
C130.0366 (9)0.0484 (10)0.0248 (8)0.0064 (8)0.0062 (7)0.0085 (7)
C140.0292 (8)0.0382 (9)0.0190 (7)−0.0056 (7)0.0013 (6)−0.0014 (6)
C150.0268 (8)0.0330 (8)0.0259 (8)−0.0054 (6)0.0029 (6)−0.0027 (6)
C160.0261 (8)0.0356 (9)0.0251 (8)0.0002 (6)0.0044 (6)−0.0024 (7)
C170.0362 (9)0.0472 (10)0.0296 (9)0.0042 (8)0.0031 (7)0.0032 (8)
C180.0521 (12)0.0377 (10)0.0486 (12)0.0065 (9)0.0031 (9)0.0087 (9)
C190.0615 (13)0.0306 (9)0.0529 (12)0.0017 (9)0.0053 (10)−0.0071 (9)
C200.0465 (10)0.0366 (10)0.0330 (9)−0.0048 (8)0.0006 (8)−0.0080 (7)
C210.0339 (9)0.0270 (8)0.0511 (11)0.0046 (7)−0.0016 (8)0.0019 (8)
C220.0364 (9)0.0349 (9)0.0447 (10)0.0069 (7)−0.0049 (8)−0.0103 (8)
Cl1—C71.746 (2)C9—C101.381 (4)
S1—C41.7453 (18)C10—H100.9300
S1—C51.7223 (16)C10—C111.391 (3)
O1—C11.230 (2)C11—H110.9300
O2—C121.214 (2)C12—C131.511 (3)
O3—H30.8200C13—H13A0.9700
O3—C161.354 (2)C13—H13B0.9700
N1—H10.8600C14—H140.9300
N1—C51.382 (2)C14—C151.456 (2)
N1—C121.356 (2)C15—C161.405 (2)
N2—C131.455 (2)C15—C201.403 (2)
N2—C141.278 (2)C16—C171.391 (3)
C1—C21.454 (2)C17—H170.9300
C1—C61.509 (2)C17—C181.385 (3)
C2—C31.435 (2)C18—H180.9300
C2—C51.384 (2)C18—C191.386 (3)
C3—H3A0.9300C19—H190.9300
C3—C41.351 (2)C19—C201.373 (3)
C4—C211.503 (2)C20—H200.9300
C6—C71.385 (3)C21—H21A0.9700
C6—C111.387 (3)C21—H21B0.9700
C7—C81.386 (3)C21—C221.521 (3)
C8—H80.9300C22—H22A0.9600
C8—C91.382 (4)C22—H22B0.9600
C9—H90.9300C22—H22C0.9600
C5—S1—C491.60 (8)N1—C12—C13116.29 (15)
C16—O3—H3109.5N2—C13—C12114.87 (14)
C5—N1—H1117.8N2—C13—H13A108.5
C12—N1—H1117.8N2—C13—H13B108.5
C12—N1—C5124.42 (15)C12—C13—H13A108.5
C14—N2—C13117.32 (14)C12—C13—H13B108.5
O1—C1—C2123.10 (16)H13A—C13—H13B107.5
O1—C1—C6118.64 (15)N2—C14—H14118.7
C2—C1—C6118.17 (14)N2—C14—C15122.52 (15)
C3—C2—C1126.12 (15)C15—C14—H14118.7
C5—C2—C1122.47 (15)C16—C15—C14122.33 (15)
C5—C2—C3111.41 (15)C20—C15—C14119.14 (15)
C2—C3—H3A123.1C20—C15—C16118.53 (16)
C4—C3—C2113.79 (16)O3—C16—C15121.85 (15)
C4—C3—H3A123.1O3—C16—C17118.19 (15)
C3—C4—S1111.23 (13)C17—C16—C15119.97 (16)
C3—C4—C21129.94 (17)C16—C17—H17120.0
C21—C4—S1118.82 (14)C18—C17—C16120.03 (17)
N1—C5—S1123.71 (13)C18—C17—H17120.0
N1—C5—C2124.32 (15)C17—C18—H18119.7
C2—C5—S1111.96 (13)C17—C18—C19120.58 (19)
C7—C6—C1123.05 (17)C19—C18—H18119.7
C7—C6—C11119.20 (17)C18—C19—H19120.2
C11—C6—C1117.73 (17)C20—C19—C18119.65 (18)
C6—C7—Cl1120.58 (14)C20—C19—H19120.2
C6—C7—C8120.9 (2)C15—C20—H20119.4
C8—C7—Cl1118.52 (17)C19—C20—C15121.23 (18)
C7—C8—H8120.3C19—C20—H20119.4
C9—C8—C7119.4 (2)C4—C21—H21A108.9
C9—C8—H8120.3C4—C21—H21B108.9
C8—C9—H9119.8C4—C21—C22113.53 (16)
C10—C9—C8120.41 (19)H21A—C21—H21B107.7
C10—C9—H9119.8C22—C21—H21A108.9
C9—C10—H10120.1C22—C21—H21B108.9
C9—C10—C11119.9 (2)C21—C22—H22A109.5
C11—C10—H10120.1C21—C22—H22B109.5
C6—C11—C10120.2 (2)C21—C22—H22C109.5
C6—C11—H11119.9H22A—C22—H22B109.5
C10—C11—H11119.9H22A—C22—H22C109.5
O2—C12—N1122.69 (17)H22B—C22—H22C109.5
O2—C12—C13121.02 (16)
Cl1—C7—C8—C9178.20 (15)C5—S1—C4—C21−178.57 (14)
S1—C4—C21—C22172.69 (13)C5—N1—C12—O20.9 (3)
O1—C1—C2—C3−179.10 (19)C5—N1—C12—C13−179.01 (16)
O1—C1—C2—C5−0.1 (3)C5—C2—C3—C4−0.4 (2)
O1—C1—C6—C7−111.3 (2)C6—C1—C2—C3−2.5 (3)
O1—C1—C6—C1166.8 (3)C6—C1—C2—C5176.43 (17)
O2—C12—C13—N2173.46 (17)C6—C7—C8—C9−0.6 (3)
O3—C16—C17—C18−179.09 (18)C7—C6—C11—C101.3 (3)
N1—C12—C13—N2−6.6 (2)C7—C8—C9—C101.1 (3)
N2—C14—C15—C16−2.1 (2)C8—C9—C10—C11−0.5 (4)
N2—C14—C15—C20177.49 (16)C9—C10—C11—C6−0.8 (4)
C1—C2—C3—C4178.67 (17)C11—C6—C7—Cl1−179.40 (15)
C1—C2—C5—S1−178.41 (14)C11—C6—C7—C8−0.7 (3)
C1—C2—C5—N12.3 (3)C12—N1—C5—S1−1.4 (2)
C1—C6—C7—Cl1−1.3 (2)C12—N1—C5—C2177.77 (17)
C1—C6—C7—C8177.39 (16)C13—N2—C14—C15176.28 (15)
C1—C6—C11—C10−176.8 (2)C14—N2—C13—C12149.92 (16)
C2—C1—C6—C772.0 (2)C14—C15—C16—O3−1.5 (3)
C2—C1—C6—C11−110.0 (2)C14—C15—C16—C17178.81 (15)
C2—C3—C4—S1−0.1 (2)C14—C15—C20—C19−178.92 (18)
C2—C3—C4—C21178.74 (17)C15—C16—C17—C180.6 (3)
C3—C2—C5—S10.69 (19)C16—C15—C20—C190.7 (3)
C3—C2—C5—N1−178.61 (16)C16—C17—C18—C19−0.2 (3)
C3—C4—C21—C22−6.1 (3)C17—C18—C19—C200.1 (3)
C4—S1—C5—N1178.67 (15)C18—C19—C20—C15−0.4 (3)
C4—S1—C5—C2−0.63 (14)C20—C15—C16—O3178.86 (16)
C5—S1—C4—C30.40 (14)C20—C15—C16—C17−0.8 (2)
D—H···AD—HH···AD···AD—H···A
O3—H3···N20.821.942.6611 (19)146
N1—H1···O10.862.082.7177 (19)130
C14—H14···O3i0.932.563.405 (2)152
C20—H20···O2ii0.932.573.209 (2)126
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3⋯N20.821.942.6611 (19)146
N1—H1⋯O10.862.082.7177 (19)130
C14—H14⋯O3i 0.932.563.405 (2)152
C20—H20⋯O2ii 0.932.573.209 (2)126

Symmetry codes: (i) ; (ii) .

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