Literature DB >> 22347140

2-Amino-N-[3-(2-chloro-benzo-yl)-5-ethyl-thio-phen-2-yl]acetamide.

Hoong-Kun Fun, Suchada Chantrapromma, A S Dayananda, H S Yathirajan, A R Ramesha.   

Abstract

In the title compound, C(15)H(15)ClN(2)O(2)S, the 2-amino-acetamide N-C(=O)-C-N unit is approximately planar, with an r.m.s. deviation of 0.020 (4) Å. The central thio-phene ring makes dihedral angles of 7.84 (11) and 88.11 (11)°, respectively, with the 2-amino-acetamide unit and the 2-chloro-phenyl ring. An intra-molecular N-H⋯O hydrogen bond generates an S(6) ring motif. In the crystal, mol-ecules are linked by an N-H⋯O hydrogen bond and weak C-H⋯O inter-actions into a chain along the c axis. A C-H⋯π inter-action is also present.

Entities:  

Year:  2012        PMID: 22347140      PMCID: PMC3275284          DOI: 10.1107/S1600536812003261

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For related literature on hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For background to and activities of etizolam and thio­phene derivatives, see: Gewald & Schindler (1990 ▶); Jagadees Babu et al. (2011 ▶); Shafeeque et al. (1999 ▶); Nakamura & Mukasa (1992 ▶); Nakanishi et al. (1973 ▶); Ramanathan & Namboothiri (1978 ▶). For related structures, see: Dockendorff et al. (2006 ▶); Ferreira de Lima et al. (2009 ▶); Nogueira et al. (2010 ▶). For the stability of the temperature controller, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C15H15ClN2O2S M = 322.80 Monoclinic, a = 13.9784 (11) Å b = 13.5565 (11) Å c = 8.3334 (7) Å β = 91.233 (1)° V = 1578.8 (2) Å3 Z = 4 Mo Kα radiation μ = 0.38 mm−1 T = 293 K 0.56 × 0.41 × 0.28 mm

Data collection

Bruker APEX DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.817, T max = 0.902 16034 measured reflections 4184 independent reflections 3180 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.163 S = 1.05 4184 reflections 191 parameters H-atom parameters constrained Δρmax = 0.47 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812003261/is5060sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812003261/is5060Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812003261/is5060Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H15ClN2O2SF(000) = 672
Mr = 322.80Dx = 1.358 Mg m3
Monoclinic, P21/cMelting point = 417–419 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 13.9784 (11) ÅCell parameters from 4184 reflections
b = 13.5565 (11) Åθ = 1.5–29.0°
c = 8.3334 (7) ŵ = 0.38 mm1
β = 91.233 (1)°T = 293 K
V = 1578.8 (2) Å3Block, yellow
Z = 40.56 × 0.41 × 0.28 mm
Bruker APEX DUO CCD area-detector diffractometer4184 independent reflections
Radiation source: sealed tube3180 reflections with I > 2σ(I)
graphiteRint = 0.020
φ and ω scansθmax = 29.0°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −18→19
Tmin = 0.817, Tmax = 0.902k = −18→17
16034 measured reflectionsl = −11→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.163H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.079P)2 + 0.4642P] where P = (Fo2 + 2Fc2)/3
4184 reflections(Δ/σ)max = 0.001
191 parametersΔρmax = 0.47 e Å3
0 restraintsΔρmin = −0.28 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.44203 (5)0.00271 (7)0.78182 (12)0.1059 (3)
S10.12494 (4)0.13080 (4)1.17920 (6)0.06549 (19)
O10.19142 (11)−0.04825 (14)0.72869 (17)0.0736 (5)
O2−0.03578 (13)0.17865 (14)1.0035 (2)0.0834 (5)
N10.06864 (11)0.08376 (12)0.87282 (19)0.0516 (4)
H1N10.08450.05970.78640.062*
N2−0.02762 (16)0.09813 (17)0.5929 (3)0.0771 (5)
H1N2−0.08040.07350.54960.093*
H2N2−0.00660.14160.52620.093*
C10.40677 (15)−0.11245 (19)0.8517 (3)0.0658 (5)
C20.47451 (19)−0.1860 (3)0.8745 (3)0.0863 (8)
H2A0.5387−0.17410.85430.104*
C30.4451 (2)−0.2771 (2)0.9274 (3)0.0897 (8)
H3A0.4899−0.32740.94020.108*
C40.3506 (2)−0.2951 (2)0.9617 (3)0.0834 (7)
H4A0.3319−0.35660.99880.100*
C50.28426 (17)−0.22083 (18)0.9404 (3)0.0694 (6)
H5A0.2206−0.23240.96450.083*
C60.31130 (13)−0.12879 (15)0.8834 (2)0.0545 (4)
C70.23554 (13)−0.05129 (16)0.8577 (2)0.0540 (4)
C80.21449 (13)0.01234 (14)0.9924 (2)0.0506 (4)
C90.13424 (13)0.07179 (14)0.9968 (2)0.0497 (4)
C100.23183 (18)0.07790 (18)1.2498 (3)0.0677 (6)
C110.26932 (16)0.01788 (16)1.1402 (2)0.0606 (5)
H11A0.3258−0.01711.15800.073*
C120.2683 (3)0.1027 (3)1.4170 (3)0.1028 (10)
H12A0.22030.08291.49300.123*
H12B0.32530.06391.43940.123*
C130.2909 (3)0.2061 (3)1.4438 (5)0.1304 (15)
H13A0.31600.21471.55100.196*
H13B0.23390.24501.42960.196*
H13C0.33780.22701.36840.196*
C14−0.01269 (14)0.13727 (14)0.8807 (3)0.0568 (4)
C15−0.07268 (15)0.14234 (17)0.7292 (3)0.0642 (5)
H15A−0.13310.10920.74680.077*
H15B−0.08650.21090.70500.077*
U11U22U33U12U13U23
Cl10.0672 (4)0.1184 (7)0.1321 (7)−0.0118 (4)0.0012 (4)0.0488 (5)
S10.0777 (4)0.0644 (3)0.0544 (3)−0.0016 (2)0.0008 (2)−0.0138 (2)
O10.0712 (9)0.1004 (12)0.0487 (7)0.0291 (9)−0.0113 (6)−0.0111 (7)
O20.0772 (11)0.0864 (12)0.0864 (11)0.0238 (9)0.0016 (9)−0.0235 (10)
N10.0509 (8)0.0529 (9)0.0509 (8)0.0057 (7)−0.0018 (6)−0.0039 (6)
N20.0811 (13)0.0784 (13)0.0710 (12)0.0116 (11)−0.0191 (10)−0.0050 (10)
C10.0517 (10)0.0825 (15)0.0631 (12)0.0085 (10)−0.0008 (9)0.0073 (11)
C20.0599 (13)0.119 (2)0.0801 (16)0.0295 (14)−0.0003 (11)0.0058 (16)
C30.095 (2)0.0887 (19)0.0849 (17)0.0402 (16)−0.0130 (14)−0.0049 (15)
C40.099 (2)0.0647 (14)0.0851 (17)0.0086 (13)−0.0192 (14)−0.0007 (12)
C50.0655 (13)0.0703 (14)0.0720 (13)−0.0003 (10)−0.0114 (10)0.0000 (11)
C60.0497 (9)0.0654 (12)0.0483 (9)0.0070 (8)−0.0045 (7)−0.0031 (8)
C70.0470 (9)0.0654 (11)0.0494 (9)0.0045 (8)−0.0027 (7)0.0002 (8)
C80.0477 (9)0.0560 (10)0.0478 (9)−0.0027 (7)−0.0047 (7)−0.0009 (7)
C90.0518 (9)0.0492 (9)0.0480 (9)−0.0050 (7)−0.0003 (7)−0.0030 (7)
C100.0822 (14)0.0698 (13)0.0505 (10)−0.0120 (11)−0.0132 (10)−0.0024 (9)
C110.0608 (11)0.0649 (12)0.0555 (10)−0.0065 (9)−0.0135 (9)0.0017 (9)
C120.129 (3)0.121 (2)0.0574 (13)−0.024 (2)−0.0235 (15)−0.0127 (15)
C130.131 (3)0.144 (3)0.114 (3)0.016 (2)−0.040 (2)−0.072 (3)
C140.0534 (10)0.0485 (10)0.0686 (12)0.0021 (8)0.0015 (9)−0.0005 (9)
C150.0538 (11)0.0601 (12)0.0784 (14)0.0042 (9)−0.0054 (9)0.0132 (10)
Cl1—C11.741 (3)C5—C61.390 (3)
S1—C91.7248 (18)C5—H5A0.9300
S1—C101.748 (3)C6—C71.504 (3)
O1—C71.229 (2)C7—C81.451 (3)
O2—C141.217 (3)C8—C91.382 (3)
N1—C141.351 (2)C8—C111.438 (3)
N1—C91.376 (2)C10—C111.338 (3)
N1—H1N10.8253C10—C121.511 (3)
N2—C151.441 (3)C11—H11A0.9300
N2—H1N20.8805C12—C131.454 (5)
N2—H2N20.8655C12—H12A0.9700
C1—C61.384 (3)C12—H12B0.9700
C1—C21.386 (3)C13—H13A0.9600
C2—C31.376 (5)C13—H13B0.9600
C2—H2A0.9300C13—H13C0.9600
C3—C41.379 (4)C14—C151.502 (3)
C3—H3A0.9300C15—H15A0.9700
C4—C51.378 (3)C15—H15B0.9700
C4—H4A0.9300
C9—S1—C1091.49 (10)N1—C9—C8125.22 (16)
C14—N1—C9125.06 (17)N1—C9—S1123.04 (14)
C14—N1—H1N1119.8C8—C9—S1111.74 (13)
C9—N1—H1N1114.9C11—C10—C12129.4 (3)
C15—N2—H1N296.0C11—C10—S1111.37 (15)
C15—N2—H2N2112.5C12—C10—S1119.2 (2)
H1N2—N2—H2N2106.7C10—C11—C8114.0 (2)
C6—C1—C2121.2 (2)C10—C11—H11A123.0
C6—C1—Cl1119.25 (17)C8—C11—H11A123.0
C2—C1—Cl1119.6 (2)C13—C12—C10115.1 (3)
C3—C2—C1118.8 (3)C13—C12—H12A108.5
C3—C2—H2A120.6C10—C12—H12A108.5
C1—C2—H2A120.6C13—C12—H12B108.5
C2—C3—C4121.2 (2)C10—C12—H12B108.5
C2—C3—H3A119.4H12A—C12—H12B107.5
C4—C3—H3A119.4C12—C13—H13A109.5
C5—C4—C3119.3 (3)C12—C13—H13B109.5
C5—C4—H4A120.3H13A—C13—H13B109.5
C3—C4—H4A120.3C12—C13—H13C109.5
C4—C5—C6120.8 (2)H13A—C13—H13C109.5
C4—C5—H5A119.6H13B—C13—H13C109.5
C6—C5—H5A119.6O2—C14—N1121.8 (2)
C1—C6—C5118.6 (2)O2—C14—C15122.17 (19)
C1—C6—C7122.7 (2)N1—C14—C15116.03 (18)
C5—C6—C7118.68 (18)N2—C15—C14113.44 (17)
O1—C7—C8123.42 (18)N2—C15—H15A108.9
O1—C7—C6119.14 (18)C14—C15—H15A108.9
C8—C7—C6117.31 (16)N2—C15—H15B108.9
C9—C8—C11111.39 (17)C14—C15—H15B108.9
C9—C8—C7123.05 (16)H15A—C15—H15B107.7
C11—C8—C7125.47 (18)
C6—C1—C2—C31.0 (4)C14—N1—C9—S1−4.1 (3)
Cl1—C1—C2—C3−179.0 (2)C11—C8—C9—N1178.71 (18)
C1—C2—C3—C4−1.7 (4)C7—C8—C9—N1−4.8 (3)
C2—C3—C4—C50.9 (4)C11—C8—C9—S1−1.3 (2)
C3—C4—C5—C60.7 (4)C7—C8—C9—S1175.21 (15)
C2—C1—C6—C50.6 (3)C10—S1—C9—N1−178.53 (17)
Cl1—C1—C6—C5−179.48 (17)C10—S1—C9—C81.49 (16)
C2—C1—C6—C7−179.0 (2)C9—S1—C10—C11−1.31 (19)
Cl1—C1—C6—C71.0 (3)C9—S1—C10—C12179.3 (2)
C4—C5—C6—C1−1.4 (3)C12—C10—C11—C8−179.9 (3)
C4—C5—C6—C7178.2 (2)S1—C10—C11—C80.8 (3)
C1—C6—C7—O192.5 (3)C9—C8—C11—C100.3 (3)
C5—C6—C7—O1−87.0 (3)C7—C8—C11—C10−176.1 (2)
C1—C6—C7—C8−91.3 (2)C11—C10—C12—C13118.6 (4)
C5—C6—C7—C889.1 (2)S1—C10—C12—C13−62.2 (4)
O1—C7—C8—C910.0 (3)C9—N1—C14—O2−1.6 (3)
C6—C7—C8—C9−166.00 (18)C9—N1—C14—C15178.49 (18)
O1—C7—C8—C11−174.0 (2)O2—C14—C15—N2173.2 (2)
C6—C7—C8—C1110.0 (3)N1—C14—C15—N2−6.9 (3)
C14—N1—C9—C8175.84 (19)
Cg1 is the centroid of the thiophene C8/C9/S1/C10/C11 ring.
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O10.832.152.771 (2)132
N2—H2N2···O2i0.872.483.118 (3)131
C15—H15B···O2i0.972.373.120 (3)134
C15—H15A···Cg1ii0.972.753.530 (2)238
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the thio­phene C8/C9/S1/C10/C11 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯O10.832.152.771 (2)132
N2—H2N2⋯O2i0.872.483.118 (3)131
C15—H15B⋯O2i0.972.373.120 (3)134
C15—H15ACg1ii0.972.753.530 (2)238

Symmetry codes: (i) ; (ii) .

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