| Literature DB >> 22347140 |
Hoong-Kun Fun, Suchada Chantrapromma, A S Dayananda, H S Yathirajan, A R Ramesha.
Abstract
In the title compound, C(15)H(15)ClN(2)O(2)S, the 2-amino-acetamide N-C(=O)-C-N unit is approximately planar, with an r.m.s. deviation of 0.020 (4) Å. The central thio-phene ring makes dihedral angles of 7.84 (11) and 88.11 (11)°, respectively, with the 2-amino-acetamide unit and the 2-chloro-phenyl ring. An intra-molecular N-H⋯O hydrogen bond generates an S(6) ring motif. In the crystal, mol-ecules are linked by an N-H⋯O hydrogen bond and weak C-H⋯O inter-actions into a chain along the c axis. A C-H⋯π inter-action is also present.Entities:
Year: 2012 PMID: 22347140 PMCID: PMC3275284 DOI: 10.1107/S1600536812003261
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H15ClN2O2S | |
| Monoclinic, | Melting point = 417–419 K |
| Hall symbol: -P 2ybc | Mo |
| Cell parameters from 4184 reflections | |
| θ = 1.5–29.0° | |
| µ = 0.38 mm−1 | |
| β = 91.233 (1)° | |
| Block, yellow | |
| 0.56 × 0.41 × 0.28 mm |
| Bruker APEX DUO CCD area-detector diffractometer | 4184 independent reflections |
| Radiation source: sealed tube | 3180 reflections with |
| graphite | |
| φ and ω scans | θmax = 29.0°, θmin = 1.5° |
| Absorption correction: multi-scan ( | |
| 16034 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4184 reflections | (Δ/σ)max = 0.001 |
| 191 parameters | Δρmax = 0.47 e Å−3 |
| 0 restraints | Δρmin = −0.28 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Cl1 | 0.44203 (5) | 0.00271 (7) | 0.78182 (12) | 0.1059 (3) | |
| S1 | 0.12494 (4) | 0.13080 (4) | 1.17920 (6) | 0.06549 (19) | |
| O1 | 0.19142 (11) | −0.04825 (14) | 0.72869 (17) | 0.0736 (5) | |
| O2 | −0.03578 (13) | 0.17865 (14) | 1.0035 (2) | 0.0834 (5) | |
| N1 | 0.06864 (11) | 0.08376 (12) | 0.87282 (19) | 0.0516 (4) | |
| H1N1 | 0.0845 | 0.0597 | 0.7864 | 0.062* | |
| N2 | −0.02762 (16) | 0.09813 (17) | 0.5929 (3) | 0.0771 (5) | |
| H1N2 | −0.0804 | 0.0735 | 0.5496 | 0.093* | |
| H2N2 | −0.0066 | 0.1416 | 0.5262 | 0.093* | |
| C1 | 0.40677 (15) | −0.11245 (19) | 0.8517 (3) | 0.0658 (5) | |
| C2 | 0.47451 (19) | −0.1860 (3) | 0.8745 (3) | 0.0863 (8) | |
| H2A | 0.5387 | −0.1741 | 0.8543 | 0.104* | |
| C3 | 0.4451 (2) | −0.2771 (2) | 0.9274 (3) | 0.0897 (8) | |
| H3A | 0.4899 | −0.3274 | 0.9402 | 0.108* | |
| C4 | 0.3506 (2) | −0.2951 (2) | 0.9617 (3) | 0.0834 (7) | |
| H4A | 0.3319 | −0.3566 | 0.9988 | 0.100* | |
| C5 | 0.28426 (17) | −0.22083 (18) | 0.9404 (3) | 0.0694 (6) | |
| H5A | 0.2206 | −0.2324 | 0.9645 | 0.083* | |
| C6 | 0.31130 (13) | −0.12879 (15) | 0.8834 (2) | 0.0545 (4) | |
| C7 | 0.23554 (13) | −0.05129 (16) | 0.8577 (2) | 0.0540 (4) | |
| C8 | 0.21449 (13) | 0.01234 (14) | 0.9924 (2) | 0.0506 (4) | |
| C9 | 0.13424 (13) | 0.07179 (14) | 0.9968 (2) | 0.0497 (4) | |
| C10 | 0.23183 (18) | 0.07790 (18) | 1.2498 (3) | 0.0677 (6) | |
| C11 | 0.26932 (16) | 0.01788 (16) | 1.1402 (2) | 0.0606 (5) | |
| H11A | 0.3258 | −0.0171 | 1.1580 | 0.073* | |
| C12 | 0.2683 (3) | 0.1027 (3) | 1.4170 (3) | 0.1028 (10) | |
| H12A | 0.2203 | 0.0829 | 1.4930 | 0.123* | |
| H12B | 0.3253 | 0.0639 | 1.4394 | 0.123* | |
| C13 | 0.2909 (3) | 0.2061 (3) | 1.4438 (5) | 0.1304 (15) | |
| H13A | 0.3160 | 0.2147 | 1.5510 | 0.196* | |
| H13B | 0.2339 | 0.2450 | 1.4296 | 0.196* | |
| H13C | 0.3378 | 0.2270 | 1.3684 | 0.196* | |
| C14 | −0.01269 (14) | 0.13727 (14) | 0.8807 (3) | 0.0568 (4) | |
| C15 | −0.07268 (15) | 0.14234 (17) | 0.7292 (3) | 0.0642 (5) | |
| H15A | −0.1331 | 0.1092 | 0.7468 | 0.077* | |
| H15B | −0.0865 | 0.2109 | 0.7050 | 0.077* |
| Cl1 | 0.0672 (4) | 0.1184 (7) | 0.1321 (7) | −0.0118 (4) | 0.0012 (4) | 0.0488 (5) |
| S1 | 0.0777 (4) | 0.0644 (3) | 0.0544 (3) | −0.0016 (2) | 0.0008 (2) | −0.0138 (2) |
| O1 | 0.0712 (9) | 0.1004 (12) | 0.0487 (7) | 0.0291 (9) | −0.0113 (6) | −0.0111 (7) |
| O2 | 0.0772 (11) | 0.0864 (12) | 0.0864 (11) | 0.0238 (9) | 0.0016 (9) | −0.0235 (10) |
| N1 | 0.0509 (8) | 0.0529 (9) | 0.0509 (8) | 0.0057 (7) | −0.0018 (6) | −0.0039 (6) |
| N2 | 0.0811 (13) | 0.0784 (13) | 0.0710 (12) | 0.0116 (11) | −0.0191 (10) | −0.0050 (10) |
| C1 | 0.0517 (10) | 0.0825 (15) | 0.0631 (12) | 0.0085 (10) | −0.0008 (9) | 0.0073 (11) |
| C2 | 0.0599 (13) | 0.119 (2) | 0.0801 (16) | 0.0295 (14) | −0.0003 (11) | 0.0058 (16) |
| C3 | 0.095 (2) | 0.0887 (19) | 0.0849 (17) | 0.0402 (16) | −0.0130 (14) | −0.0049 (15) |
| C4 | 0.099 (2) | 0.0647 (14) | 0.0851 (17) | 0.0086 (13) | −0.0192 (14) | −0.0007 (12) |
| C5 | 0.0655 (13) | 0.0703 (14) | 0.0720 (13) | −0.0003 (10) | −0.0114 (10) | 0.0000 (11) |
| C6 | 0.0497 (9) | 0.0654 (12) | 0.0483 (9) | 0.0070 (8) | −0.0045 (7) | −0.0031 (8) |
| C7 | 0.0470 (9) | 0.0654 (11) | 0.0494 (9) | 0.0045 (8) | −0.0027 (7) | 0.0002 (8) |
| C8 | 0.0477 (9) | 0.0560 (10) | 0.0478 (9) | −0.0027 (7) | −0.0047 (7) | −0.0009 (7) |
| C9 | 0.0518 (9) | 0.0492 (9) | 0.0480 (9) | −0.0050 (7) | −0.0003 (7) | −0.0030 (7) |
| C10 | 0.0822 (14) | 0.0698 (13) | 0.0505 (10) | −0.0120 (11) | −0.0132 (10) | −0.0024 (9) |
| C11 | 0.0608 (11) | 0.0649 (12) | 0.0555 (10) | −0.0065 (9) | −0.0135 (9) | 0.0017 (9) |
| C12 | 0.129 (3) | 0.121 (2) | 0.0574 (13) | −0.024 (2) | −0.0235 (15) | −0.0127 (15) |
| C13 | 0.131 (3) | 0.144 (3) | 0.114 (3) | 0.016 (2) | −0.040 (2) | −0.072 (3) |
| C14 | 0.0534 (10) | 0.0485 (10) | 0.0686 (12) | 0.0021 (8) | 0.0015 (9) | −0.0005 (9) |
| C15 | 0.0538 (11) | 0.0601 (12) | 0.0784 (14) | 0.0042 (9) | −0.0054 (9) | 0.0132 (10) |
| Cl1—C1 | 1.741 (3) | C5—C6 | 1.390 (3) |
| S1—C9 | 1.7248 (18) | C5—H5A | 0.9300 |
| S1—C10 | 1.748 (3) | C6—C7 | 1.504 (3) |
| O1—C7 | 1.229 (2) | C7—C8 | 1.451 (3) |
| O2—C14 | 1.217 (3) | C8—C9 | 1.382 (3) |
| N1—C14 | 1.351 (2) | C8—C11 | 1.438 (3) |
| N1—C9 | 1.376 (2) | C10—C11 | 1.338 (3) |
| N1—H1N1 | 0.8253 | C10—C12 | 1.511 (3) |
| N2—C15 | 1.441 (3) | C11—H11A | 0.9300 |
| N2—H1N2 | 0.8805 | C12—C13 | 1.454 (5) |
| N2—H2N2 | 0.8655 | C12—H12A | 0.9700 |
| C1—C6 | 1.384 (3) | C12—H12B | 0.9700 |
| C1—C2 | 1.386 (3) | C13—H13A | 0.9600 |
| C2—C3 | 1.376 (5) | C13—H13B | 0.9600 |
| C2—H2A | 0.9300 | C13—H13C | 0.9600 |
| C3—C4 | 1.379 (4) | C14—C15 | 1.502 (3) |
| C3—H3A | 0.9300 | C15—H15A | 0.9700 |
| C4—C5 | 1.378 (3) | C15—H15B | 0.9700 |
| C4—H4A | 0.9300 | ||
| C9—S1—C10 | 91.49 (10) | N1—C9—C8 | 125.22 (16) |
| C14—N1—C9 | 125.06 (17) | N1—C9—S1 | 123.04 (14) |
| C14—N1—H1N1 | 119.8 | C8—C9—S1 | 111.74 (13) |
| C9—N1—H1N1 | 114.9 | C11—C10—C12 | 129.4 (3) |
| C15—N2—H1N2 | 96.0 | C11—C10—S1 | 111.37 (15) |
| C15—N2—H2N2 | 112.5 | C12—C10—S1 | 119.2 (2) |
| H1N2—N2—H2N2 | 106.7 | C10—C11—C8 | 114.0 (2) |
| C6—C1—C2 | 121.2 (2) | C10—C11—H11A | 123.0 |
| C6—C1—Cl1 | 119.25 (17) | C8—C11—H11A | 123.0 |
| C2—C1—Cl1 | 119.6 (2) | C13—C12—C10 | 115.1 (3) |
| C3—C2—C1 | 118.8 (3) | C13—C12—H12A | 108.5 |
| C3—C2—H2A | 120.6 | C10—C12—H12A | 108.5 |
| C1—C2—H2A | 120.6 | C13—C12—H12B | 108.5 |
| C2—C3—C4 | 121.2 (2) | C10—C12—H12B | 108.5 |
| C2—C3—H3A | 119.4 | H12A—C12—H12B | 107.5 |
| C4—C3—H3A | 119.4 | C12—C13—H13A | 109.5 |
| C5—C4—C3 | 119.3 (3) | C12—C13—H13B | 109.5 |
| C5—C4—H4A | 120.3 | H13A—C13—H13B | 109.5 |
| C3—C4—H4A | 120.3 | C12—C13—H13C | 109.5 |
| C4—C5—C6 | 120.8 (2) | H13A—C13—H13C | 109.5 |
| C4—C5—H5A | 119.6 | H13B—C13—H13C | 109.5 |
| C6—C5—H5A | 119.6 | O2—C14—N1 | 121.8 (2) |
| C1—C6—C5 | 118.6 (2) | O2—C14—C15 | 122.17 (19) |
| C1—C6—C7 | 122.7 (2) | N1—C14—C15 | 116.03 (18) |
| C5—C6—C7 | 118.68 (18) | N2—C15—C14 | 113.44 (17) |
| O1—C7—C8 | 123.42 (18) | N2—C15—H15A | 108.9 |
| O1—C7—C6 | 119.14 (18) | C14—C15—H15A | 108.9 |
| C8—C7—C6 | 117.31 (16) | N2—C15—H15B | 108.9 |
| C9—C8—C11 | 111.39 (17) | C14—C15—H15B | 108.9 |
| C9—C8—C7 | 123.05 (16) | H15A—C15—H15B | 107.7 |
| C11—C8—C7 | 125.47 (18) | ||
| C6—C1—C2—C3 | 1.0 (4) | C14—N1—C9—S1 | −4.1 (3) |
| Cl1—C1—C2—C3 | −179.0 (2) | C11—C8—C9—N1 | 178.71 (18) |
| C1—C2—C3—C4 | −1.7 (4) | C7—C8—C9—N1 | −4.8 (3) |
| C2—C3—C4—C5 | 0.9 (4) | C11—C8—C9—S1 | −1.3 (2) |
| C3—C4—C5—C6 | 0.7 (4) | C7—C8—C9—S1 | 175.21 (15) |
| C2—C1—C6—C5 | 0.6 (3) | C10—S1—C9—N1 | −178.53 (17) |
| Cl1—C1—C6—C5 | −179.48 (17) | C10—S1—C9—C8 | 1.49 (16) |
| C2—C1—C6—C7 | −179.0 (2) | C9—S1—C10—C11 | −1.31 (19) |
| Cl1—C1—C6—C7 | 1.0 (3) | C9—S1—C10—C12 | 179.3 (2) |
| C4—C5—C6—C1 | −1.4 (3) | C12—C10—C11—C8 | −179.9 (3) |
| C4—C5—C6—C7 | 178.2 (2) | S1—C10—C11—C8 | 0.8 (3) |
| C1—C6—C7—O1 | 92.5 (3) | C9—C8—C11—C10 | 0.3 (3) |
| C5—C6—C7—O1 | −87.0 (3) | C7—C8—C11—C10 | −176.1 (2) |
| C1—C6—C7—C8 | −91.3 (2) | C11—C10—C12—C13 | 118.6 (4) |
| C5—C6—C7—C8 | 89.1 (2) | S1—C10—C12—C13 | −62.2 (4) |
| O1—C7—C8—C9 | 10.0 (3) | C9—N1—C14—O2 | −1.6 (3) |
| C6—C7—C8—C9 | −166.00 (18) | C9—N1—C14—C15 | 178.49 (18) |
| O1—C7—C8—C11 | −174.0 (2) | O2—C14—C15—N2 | 173.2 (2) |
| C6—C7—C8—C11 | 10.0 (3) | N1—C14—C15—N2 | −6.9 (3) |
| C14—N1—C9—C8 | 175.84 (19) |
| H··· | ||||
| N1—H1N1···O1 | 0.83 | 2.15 | 2.771 (2) | 132 |
| N2—H2N2···O2i | 0.87 | 2.48 | 3.118 (3) | 131 |
| C15—H15B···O2i | 0.97 | 2.37 | 3.120 (3) | 134 |
| C15—H15A···Cg1ii | 0.97 | 2.75 | 3.530 (2) | 238 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the thiophene C8/C9/S1/C10/C11 ring.
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.83 | 2.15 | 2.771 (2) | 132 |
| N2—H2 | 0.87 | 2.48 | 3.118 (3) | 131 |
| C15—H15 | 0.97 | 2.37 | 3.120 (3) | 134 |
| C15—H15 | 0.97 | 2.75 | 3.530 (2) | 238 |
Symmetry codes: (i) ; (ii) .