Literature DB >> 25305413

A unified framework based on the binding polynomial for characterizing biological systems by isothermal titration calorimetry.

Sonia Vega1, Olga Abian2, Adrian Velazquez-Campoy3.   

Abstract

Isothermal titration calorimetry (ITC) has become the gold-standard technique for studying binding processes due to its high precision and sensitivity, as well as its capability for the simultaneous determination of the association equilibrium constant, the binding enthalpy and the binding stoichiometry. The current widespread use of ITC for biological systems has been facilitated by technical advances and the availability of commercial calorimeters. However, the complexity of data analysis for non-standard models is one of the most significant drawbacks in ITC. Many models for studying macromolecular interactions can be found in the literature, but it looks like each biological system requires specific modeling and data analysis approaches. The aim of this article is to solve this lack of unity and provide a unified methodological framework for studying binding interactions by ITC that can be applied to any experimental system. The apparent complexity of this methodology, based on the binding polynomial, is overcome by its easy generalization to complex systems.
Copyright © 2014 Elsevier Inc. All rights reserved.

Keywords:  Allosteric and polysteric linkage; Binding polynomial; Homotropic and heterotropic chemical linkage; Isothermal titration calorimetry; Ligand binding; Macromolecular interactions

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Year:  2014        PMID: 25305413     DOI: 10.1016/j.ymeth.2014.09.010

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  23 in total

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2.  Integration and global analysis of isothermal titration calorimetry data for studying macromolecular interactions.

Authors:  Chad A Brautigam; Huaying Zhao; Carolyn Vargas; Sandro Keller; Peter Schuck
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3.  Isothermal titration calorimetry (ITC): a standard operating procedure (SOP).

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Journal:  Eur Biophys J       Date:  2021-03-04       Impact factor: 1.733

4.  Mechanistic Models Fit to Variable Temperature Calorimetric Data Provide Insights into Cooperativity.

Authors:  Elihu C Ihms; Ian R Kleckner; Paul Gollnick; Mark P Foster
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5.  Model of a Kinetically Driven Crosstalk between Paralogous Protein Encounter Complexes.

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Journal:  Biophys J       Date:  2019-10-02       Impact factor: 4.033

Review 6.  The thermodynamics of protein interactions with essential first row transition metals.

Authors:  Fadi Bou-Abdallah; Thomas R Giffune
Journal:  Biochim Biophys Acta       Date:  2015-11-10

7.  Using two-site binding models to analyze microscale thermophoresis data.

Authors:  Shih-Chia Tso; Qiuyan Chen; Sergey A Vishnivetskiy; Vsevolod V Gurevich; T M Iverson; Chad A Brautigam
Journal:  Anal Biochem       Date:  2017-10-18       Impact factor: 3.365

8.  CALX-CBD1 Ca2+-Binding Cooperativity Studied by NMR Spectroscopy and ITC with Bayesian Statistics.

Authors:  Marcus V C Cardoso; Jose D Rivera; Phelipe A M Vitale; Maximilia F S Degenhardt; Layara A Abiko; Cristiano L P Oliveira; Roberto K Salinas
Journal:  Biophys J       Date:  2020-06-10       Impact factor: 4.033

9.  A multi-laboratory benchmark study of isothermal titration calorimetry (ITC) using Ca2+ and Mg2+ binding to EDTA.

Authors:  Adrian Velazquez-Campoy; Bárbara Claro; Olga Abian; Jonas Höring; Louis Bourlon; Rafael Claveria-Gimeno; Eric Ennifar; Patrick England; Jonathan Brad Chaires; Di Wu; Grzegorz Piszczek; Chad Brautigam; Shih-Chia Tso; Huaying Zhao; Peter Schuck; Sandro Keller; Margarida Bastos
Journal:  Eur Biophys J       Date:  2021-04-16       Impact factor: 1.733

10.  Isothermal Titration Calorimetry.

Authors:  Christopher M Johnson
Journal:  Methods Mol Biol       Date:  2021
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