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Literature DB >> 25303518

Advancing the microbiome research community.

Curtis Huttenhower¹, Rob Knight², C Titus Brown³, J Gregory Caporaso⁴, Jose C Clemente⁵, Dirk Gevers⁶, Eric A Franzosa⁷, Scott T Kelley⁸, Dan Knights⁹, Ruth E Ley¹⁰, Anup Mahurkar¹¹, Jacques Ravel¹², Owen White¹³.

Abstract

The human microbiome has become a recognized factor in promoting and maintaining health. We outline opportunities in interdisciplinary research, analytical rigor, standardization, and policy development for this relatively new and rapidly developing field. Advances in these aspects of the research community may in turn advance our understanding of human microbiome biology.

Entities: Chemical Disease Species

Mesh：

Year: 2014 PMID： 25303518 PMCID： PMC4221798 DOI： 10.1016/j.cell.2014.09.022

Source DB: PubMed Journal: Cell ISSN： 0092-8674 Impact factor: 41.582

15 in total

1. De minimis risk: a proposal for a new category of research risk.

Authors: Rosamond Rhodes; Jody Azzouni; Stefan Bernard Baumrin; Keith Benkov; Martin J Blaser; Barbara Brenner; Joseph W Dauben; William J Earle; Lily Frank; Nada Gligorov; Joseph Goldfarb; Kurt Hirschhorn; Rochelle Hirschhorn; Ian Holzman; Debbie Indyk; Ethylin Wang Jabs; Douglas P Lackey; Daniel A Moros; Sean Philpott; Matthew E Rhodes; Lynne D Richardson; Henry S Sacks; Abraham Schwab; Rhoda Sperling; Brett Trusko; Arnulf Zweig
Journal: Am J Bioeth Date: 2011-11 Impact factor: 11.229

Review 2. Patient registries: utility, validity and inference.

Authors: Rachel Richesson; Kendra Vehik
Journal: Adv Exp Med Biol Date: 2010 Impact factor: 2.622

3. Efficacy and cost-effectiveness of an automated screening algorithm in an inpatient clinical trial.

Authors: Catherine C Beauharnais; Mary E Larkin; Adrian H Zai; Emily C Boykin; Jennifer Luttrell; Deborah J Wexler
Journal: Clin Trials Date: 2012-02-03 Impact factor: 2.486

4. Habitat-Lite: a GSC case study based on free text terms for environmental metadata.

Authors: Lynette Hirschman; Cheryl Clark; K Bretonnel Cohen; Scott Mardis; Joanne Luciano; Renzo Kottmann; James Cole; Victor Markowitz; Nikos Kyrpides; Norman Morrison; Lynn M Schriml; Dawn Field
Journal: OMICS Date: 2008-06

5. Pharmacometabonomic identification of a significant host-microbiome metabolic interaction affecting human drug metabolism.

Authors: T Andrew Clayton; David Baker; John C Lindon; Jeremy R Everett; Jeremy K Nicholson
Journal: Proc Natl Acad Sci U S A Date: 2009-08-10 Impact factor: 11.205

6. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.

Authors: Pelin Yilmaz; Renzo Kottmann; Dawn Field; Rob Knight; James R Cole; Linda Amaral-Zettler; Jack A Gilbert; Ilene Karsch-Mizrachi; Anjanette Johnston; Guy Cochrane; Robert Vaughan; Christopher Hunter; Joonhong Park; Norman Morrison; Philippe Rocca-Serra; Peter Sterk; Manimozhiyan Arumugam; Mark Bailey; Laura Baumgartner; Bruce W Birren; Martin J Blaser; Vivien Bonazzi; Tim Booth; Peer Bork; Frederic D Bushman; Pier Luigi Buttigieg; Patrick S G Chain; Emily Charlson; Elizabeth K Costello; Heather Huot-Creasy; Peter Dawyndt; Todd DeSantis; Noah Fierer; Jed A Fuhrman; Rachel E Gallery; Dirk Gevers; Richard A Gibbs; Inigo San Gil; Antonio Gonzalez; Jeffrey I Gordon; Robert Guralnick; Wolfgang Hankeln; Sarah Highlander; Philip Hugenholtz; Janet Jansson; Andrew L Kau; Scott T Kelley; Jerry Kennedy; Dan Knights; Omry Koren; Justin Kuczynski; Nikos Kyrpides; Robert Larsen; Christian L Lauber; Teresa Legg; Ruth E Ley; Catherine A Lozupone; Wolfgang Ludwig; Donna Lyons; Eamonn Maguire; Barbara A Methé; Folker Meyer; Brian Muegge; Sara Nakielny; Karen E Nelson; Diana Nemergut; Josh D Neufeld; Lindsay K Newbold; Anna E Oliver; Norman R Pace; Giriprakash Palanisamy; Jörg Peplies; Joseph Petrosino; Lita Proctor; Elmar Pruesse; Christian Quast; Jeroen Raes; Sujeevan Ratnasingham; Jacques Ravel; David A Relman; Susanna Assunta-Sansone; Patrick D Schloss; Lynn Schriml; Rohini Sinha; Michelle I Smith; Erica Sodergren; Aymé Spo; Jesse Stombaugh; James M Tiedje; Doyle V Ward; George M Weinstock; Doug Wendel; Owen White; Andrew Whiteley; Andreas Wilke; Jennifer R Wortman; Tanya Yatsunenko; Frank Oliver Glöckner
Journal: Nat Biotechnol Date: 2011-05 Impact factor: 54.908

7. Predicting and manipulating cardiac drug inactivation by the human gut bacterium Eggerthella lenta.

Authors: Henry J Haiser; David B Gootenberg; Kelly Chatman; Gopal Sirasani; Emily P Balskus; Peter J Turnbaugh
Journal: Science Date: 2013-07-19 Impact factor: 47.728

Review 8. The impact of the gut microbiota on human health: an integrative view.

Authors: Jose C Clemente; Luke K Ursell; Laura Wegener Parfrey; Rob Knight
Journal: Cell Date: 2012-03-16 Impact factor: 41.582

9. Obesity alters gut microbial ecology.

Authors: Ruth E Ley; Fredrik Bäckhed; Peter Turnbaugh; Catherine A Lozupone; Robin D Knight; Jeffrey I Gordon
Journal: Proc Natl Acad Sci U S A Date: 2005-07-20 Impact factor: 11.205

10. BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata.

Authors: Tanya Barrett; Karen Clark; Robert Gevorgyan; Vyacheslav Gorelenkov; Eugene Gribov; Ilene Karsch-Mizrachi; Michael Kimelman; Kim D Pruitt; Sergei Resenchuk; Tatiana Tatusova; Eugene Yaschenko; James Ostell
Journal: Nucleic Acids Res Date: 2011-12-01 Impact factor: 16.971

28 in total

Review 1. Probiotics, Prebiotics, and Synbiotics for the Prevention of Necrotizing Enterocolitis.

Authors: Kathene C Johnson-Henry; Thomas R Abrahamsson; Richard You Wu; Philip M Sherman
Journal: Adv Nutr Date: 2016-09-15 Impact factor: 8.701

Review 2. Tick microbiome: the force within.

Authors: Sukanya Narasimhan; Erol Fikrig
Journal: Trends Parasitol Date: 2015-04-27

Review 3. Use of the Microbiome in the Practice of Epidemiology: A Primer on -Omic Technologies.

Authors: Betsy Foxman; Emily T Martin
Journal: Am J Epidemiol Date: 2015-05-29 Impact factor: 4.897

Review 4. Performing Skin Microbiome Research: A Method to the Madness.

Authors: Heidi H Kong; Björn Andersson; Thomas Clavel; John E Common; Scott A Jackson; Nathan D Olson; Julia A Segre; Claudia Traidl-Hoffmann
Journal: J Invest Dermatol Date: 2017-01-04 Impact factor: 8.551

Review 5. Proceedings of the third international molecular pathological epidemiology (MPE) meeting.

Authors: Peter T Campbell; Timothy R Rebbeck; Reiko Nishihara; Andrew H Beck; Colin B Begg; Alexei A Bogdanov; Yin Cao; Helen G Coleman; Gordon J Freeman; Yujing J Heng; Curtis Huttenhower; Rafael A Irizarry; N Sertac Kip; Franziska Michor; Daniel Nevo; Ulrike Peters; Amanda I Phipps; Elizabeth M Poole; Zhi Rong Qian; John Quackenbush; Harlan Robins; Peter K Rogan; Martha L Slattery; Stephanie A Smith-Warner; Mingyang Song; Tyler J VanderWeele; Daniel Xia; Emily C Zabor; Xuehong Zhang; Molin Wang; Shuji Ogino
Journal: Cancer Causes Control Date: 2017-01-17 Impact factor: 2.506

6. A multivariate distance-based analytic framework for microbial interdependence association test in longitudinal study.

Authors: Yilong Zhang; Sung Won Han; Laura M Cox; Huilin Li
Journal: Genet Epidemiol Date: 2017-09-05 Impact factor: 2.135

Review 7. Roles for Intestinal Bacteria, Viruses, and Fungi in Pathogenesis of Inflammatory Bowel Diseases and Therapeutic Approaches.

Authors: R Balfour Sartor; Gary D Wu
Journal: Gastroenterology Date: 2016-10-18 Impact factor: 22.682