Literature DB >> 25301977

Computational Inversion of Electron Tomography Images Using L2-Gradient Flows.

Guoliang Xu1, Ming Li1, Ajay Gopinath2, Chandrajit Bajaj2.   

Abstract

In this paper, we present a stable, reliable and robust method for reconstructing a three dimensional density function from a set of two dimensional electric tomographic images. By minimizing an energy functional consisting of a fidelity term and a regularization term, an L2-gradient flow is derived. The flow is integrated by a finite element method in the spatial direction and an explicit Euler scheme in temporal direction. The experimental results show that the proposed method is efficient and effective.

Entities:  

Keywords:  Computational Inversion; Electric Tomography; Reconstruction

Year:  2011        PMID: 25301977      PMCID: PMC4188448          DOI: 10.4208/jcm.1103-m3261

Source DB:  PubMed          Journal:  J Comput Math        ISSN: 0254-9409            Impact factor:   1.021


  7 in total

1.  XMIPP: a new generation of an open-source image processing package for electron microscopy.

Authors:  C O S Sorzano; R Marabini; J Velázquez-Muriel; J R Bilbao-Castro; S H W Scheres; J M Carazo; A Pascual-Montano
Journal:  J Struct Biol       Date:  2004-11       Impact factor: 2.867

2.  Practical considerations for 3-D image reconstruction using spherically symmetric volume elements.

Authors:  S Matej; R M Lewitt
Journal:  IEEE Trans Med Imaging       Date:  1996       Impact factor: 10.048

3.  The reconstruction of a three-dimensional structure from projections and its application to electron microscopy. II. Direct methods.

Authors:  P F Gilbert
Journal:  Proc R Soc Lond B Biol Sci       Date:  1972-07-25

4.  Bio-molecule Surfaces Construction via a Higher-Order Level-Set Method.

Authors:  Chandrajit L Bajaj; Guo-Liang Xu; Qin Zhang
Journal:  J Comput Sci Technol       Date:  2008-11-01       Impact factor: 1.571

5.  Molecular architecture of native HIV-1 gp120 trimers.

Authors:  Jun Liu; Alberto Bartesaghi; Mario J Borgnia; Guillermo Sapiro; Sriram Subramaniam
Journal:  Nature       Date:  2008-07-30       Impact factor: 49.962

6.  Cryoelectron tomographic analysis of an HIV-neutralizing protein and its complex with native viral gp120.

Authors:  Adam Bennett; Jun Liu; Donald Van Ryk; Donald Bliss; James Arthos; Robert M Henderson; Sriram Subramaniam
Journal:  J Biol Chem       Date:  2007-06-28       Impact factor: 5.157

7.  On Image Reconstruction from a Small Number of Projections.

Authors:  G T Herman; R Davidi
Journal:  Inverse Probl       Date:  2008-08       Impact factor: 2.407

  7 in total
  1 in total

1.  Shape-based regularization of electron tomographic reconstruction.

Authors:  Ajay Gopinath; Guoliang Xu; David Ress; Ozan Öktem; Sriram Subramaniam; Chandrajit Bajaj
Journal:  IEEE Trans Med Imaging       Date:  2012-08-20       Impact factor: 10.048

  1 in total

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