Literature DB >> 23066529

Categorization of the gut microbiota: enterotypes or gradients?

Ian B Jeffery1, Marcus J Claesson, Paul W O'Toole, Fergus Shanahan.   

Abstract

Mesh:

Year:  2012        PMID: 23066529     DOI: 10.1038/nrmicro2859

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


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  12 in total

1.  Traces of human migrations in Helicobacter pylori populations.

Authors:  Daniel Falush; Thierry Wirth; Bodo Linz; Jonathan K Pritchard; Matthew Stephens; Mark Kidd; Martin J Blaser; David Y Graham; Sylvie Vacher; Guillermo I Perez-Perez; Yoshio Yamaoka; Francis Mégraud; Kristina Otto; Ulrike Reichard; Elena Katzowitsch; Xiaoyan Wang; Mark Achtman; Sebastian Suerbaum
Journal:  Science       Date:  2003-03-07       Impact factor: 47.728

2.  Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa.

Authors:  Carlotta De Filippo; Duccio Cavalieri; Monica Di Paola; Matteo Ramazzotti; Jean Baptiste Poullet; Sebastien Massart; Silvia Collini; Giuseppe Pieraccini; Paolo Lionetti
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-02       Impact factor: 11.205

3.  Gut microbiota composition correlates with diet and health in the elderly.

Authors:  Marcus J Claesson; Ian B Jeffery; Susana Conde; Susan E Power; Eibhlís M O'Connor; Siobhán Cusack; Hugh M B Harris; Mairead Coakley; Bhuvaneswari Lakshminarayanan; Orla O'Sullivan; Gerald F Fitzgerald; Jennifer Deane; Michael O'Connor; Norma Harnedy; Kieran O'Connor; Denis O'Mahony; Douwe van Sinderen; Martina Wallace; Lorraine Brennan; Catherine Stanton; Julian R Marchesi; Anthony P Fitzgerald; Fergus Shanahan; Colin Hill; R Paul Ross; Paul W O'Toole
Journal:  Nature       Date:  2012-08-09       Impact factor: 49.962

4.  Composition, variability, and temporal stability of the intestinal microbiota of the elderly.

Authors:  Marcus J Claesson; Siobhán Cusack; Orla O'Sullivan; Rachel Greene-Diniz; Heleen de Weerd; Edel Flannery; Julian R Marchesi; Daniel Falush; Timothy Dinan; Gerald Fitzgerald; Catherine Stanton; Douwe van Sinderen; Michael O'Connor; Norma Harnedy; Kieran O'Connor; Colm Henry; Denis O'Mahony; Anthony P Fitzgerald; Fergus Shanahan; Cillian Twomey; Colin Hill; R Paul Ross; Paul W O'Toole
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-22       Impact factor: 11.205

5.  Dominant and diet-responsive groups of bacteria within the human colonic microbiota.

Authors:  Alan W Walker; Jennifer Ince; Sylvia H Duncan; Lucy M Webster; Grietje Holtrop; Xiaolei Ze; David Brown; Mark D Stares; Paul Scott; Aurore Bergerat; Petra Louis; Freda McIntosh; Alexandra M Johnstone; Gerald E Lobley; Julian Parkhill; Harry J Flint
Journal:  ISME J       Date:  2010-08-05       Impact factor: 10.302

6.  Enterotypes of the human gut microbiome.

Authors:  Manimozhiyan Arumugam; Jeroen Raes; Eric Pelletier; Denis Le Paslier; Takuji Yamada; Daniel R Mende; Gabriel R Fernandes; Julien Tap; Thomas Bruls; Jean-Michel Batto; Marcelo Bertalan; Natalia Borruel; Francesc Casellas; Leyden Fernandez; Laurent Gautier; Torben Hansen; Masahira Hattori; Tetsuya Hayashi; Michiel Kleerebezem; Ken Kurokawa; Marion Leclerc; Florence Levenez; Chaysavanh Manichanh; H Bjørn Nielsen; Trine Nielsen; Nicolas Pons; Julie Poulain; Junjie Qin; Thomas Sicheritz-Ponten; Sebastian Tims; David Torrents; Edgardo Ugarte; Erwin G Zoetendal; Jun Wang; Francisco Guarner; Oluf Pedersen; Willem M de Vos; Søren Brunak; Joel Doré; María Antolín; François Artiguenave; Hervé M Blottiere; Mathieu Almeida; Christian Brechot; Carlos Cara; Christian Chervaux; Antonella Cultrone; Christine Delorme; Gérard Denariaz; Rozenn Dervyn; Konrad U Foerstner; Carsten Friss; Maarten van de Guchte; Eric Guedon; Florence Haimet; Wolfgang Huber; Johan van Hylckama-Vlieg; Alexandre Jamet; Catherine Juste; Ghalia Kaci; Jan Knol; Omar Lakhdari; Severine Layec; Karine Le Roux; Emmanuelle Maguin; Alexandre Mérieux; Raquel Melo Minardi; Christine M'rini; Jean Muller; Raish Oozeer; Julian Parkhill; Pierre Renault; Maria Rescigno; Nicolas Sanchez; Shinichi Sunagawa; Antonio Torrejon; Keith Turner; Gaetana Vandemeulebrouck; Encarna Varela; Yohanan Winogradsky; Georg Zeller; Jean Weissenbach; S Dusko Ehrlich; Peer Bork
Journal:  Nature       Date:  2011-04-20       Impact factor: 49.962

7.  Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans.

Authors:  Brian D Muegge; Justin Kuczynski; Dan Knights; Jose C Clemente; Antonio González; Luigi Fontana; Bernard Henrissat; Rob Knight; Jeffrey I Gordon
Journal:  Science       Date:  2011-05-20       Impact factor: 47.728

8.  Linking long-term dietary patterns with gut microbial enterotypes.

Authors:  Gary D Wu; Jun Chen; Christian Hoffmann; Kyle Bittinger; Ying-Yu Chen; Sue A Keilbaugh; Meenakshi Bewtra; Dan Knights; William A Walters; Rob Knight; Rohini Sinha; Erin Gilroy; Kernika Gupta; Robert Baldassano; Lisa Nessel; Hongzhe Li; Frederic D Bushman; James D Lewis
Journal:  Science       Date:  2011-09-01       Impact factor: 47.728

9.  Structure, function and diversity of the healthy human microbiome.

Authors: 
Journal:  Nature       Date:  2012-06-13       Impact factor: 49.962

10.  A core human microbiome as viewed through 16S rRNA sequence clusters.

Authors:  Susan M Huse; Yuzhen Ye; Yanjiao Zhou; Anthony A Fodor
Journal:  PLoS One       Date:  2012-06-13       Impact factor: 3.240

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  84 in total

1.  Molecular studies neglect apparently gram-negative populations in the human gut microbiota.

Authors:  Perrine Hugon; Jean-Christophe Lagier; Catherine Robert; Catherine Lepolard; Laurent Papazian; Didier Musso; Bernard Vialettes; Didier Raoult
Journal:  J Clin Microbiol       Date:  2013-07-24       Impact factor: 5.948

Review 2.  Microbial activation of gut dendritic cells and the control of mucosal immunity.

Authors:  Jennifer L Owen; Mansour Mohamadzadeh
Journal:  J Interferon Cytokine Res       Date:  2013-08-20       Impact factor: 2.607

Review 3.  The microbiota-gut-brain axis in gastrointestinal disorders: stressed bugs, stressed brain or both?

Authors:  Giada De Palma; Stephen M Collins; Premysl Bercik; Elena F Verdu
Journal:  J Physiol       Date:  2014-04-22       Impact factor: 5.182

4.  pldist: ecological dissimilarities for paired and longitudinal microbiome association analysis.

Authors:  Anna M Plantinga; Jun Chen; Robert R Jenq; Michael C Wu
Journal:  Bioinformatics       Date:  2019-10-01       Impact factor: 6.937

Review 5.  Clinician Guide to Microbiome Testing.

Authors:  Christopher Staley; Thomas Kaiser; Alexander Khoruts
Journal:  Dig Dis Sci       Date:  2018-09-28       Impact factor: 3.199

6.  Donor Species Richness Determines Faecal Microbiota Transplantation Success in Inflammatory Bowel Disease.

Authors:  Severine Vermeire; Marie Joossens; Kristin Verbeke; Jun Wang; Kathleen Machiels; João Sabino; Marc Ferrante; Gert Van Assche; Paul Rutgeerts; Jeroen Raes
Journal:  J Crohns Colitis       Date:  2015-10-29       Impact factor: 9.071

Review 7.  The gut microbiome, diet, and links to cardiometabolic and chronic disorders.

Authors:  Judith Aron-Wisnewsky; Karine Clément
Journal:  Nat Rev Nephrol       Date:  2015-11-30       Impact factor: 28.314

Review 8.  Inflammation and colorectal cancer, when microbiota-host mutualism breaks.

Authors:  Marco Candela; Silvia Turroni; Elena Biagi; Franck Carbonero; Simone Rampelli; Carla Fiorentini; Patrizia Brigidi
Journal:  World J Gastroenterol       Date:  2014-01-28       Impact factor: 5.742

9.  Reset of a critically disturbed microbial ecosystem: faecal transplant in recurrent Clostridium difficile infection.

Authors:  Susana Fuentes; Els van Nood; Sebastian Tims; Ineke Heikamp-de Jong; Cajo J F ter Braak; Josbert J Keller; Erwin G Zoetendal; Willem M de Vos
Journal:  ISME J       Date:  2014-02-27       Impact factor: 10.302

10.  Microbial enterotypes, inferred by the prevotella-to-bacteroides ratio, remained stable during a 6-month randomized controlled diet intervention with the new nordic diet.

Authors:  Henrik M Roager; Tine R Licht; Sanne K Poulsen; Thomas M Larsen; Martin I Bahl
Journal:  Appl Environ Microbiol       Date:  2013-12-02       Impact factor: 4.792

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