Literature DB >> 25297691

How to prepare neuroanatomical image data.

Nathan O'Connor1, Susan Tappan, Jacob Glaser.   

Abstract

As image data from a single neuroanatomical study can easily exceed tens of gigabytes, managing, analyzing, and presenting it is not trivial. Careful planning along multiple axes is required and includes the following: (1) Organizational methods developed for images should allow for easy and efficient access, selection, and potential reorganization of images. (2) Experimental information and other metadata should be readily available and accompany image data. (3) Even if a study's entire body of image data is made available, highlighting key results and preparing figures requires selecting image regions and resolutions, creating annotations, and adhering to publishing and community guidelines for image adjustments. Further, it may be necessary to assess Internet accessibility and infrastructure issues and to consider image formats appropriate for Web publishing. Finally, a strategy for robust, long-term, and efficient storage of image data should be developed. This unit provides a guide for preparing neuroanatomical image data.
Copyright © 2014 John Wiley & Sons, Inc.

Entities:  

Keywords:  big data; image management; virtual slides; virtual tissue; whole-slide imaging

Mesh:

Year:  2014        PMID: 25297691      PMCID: PMC8925998          DOI: 10.1002/0471142301.ns0121s69

Source DB:  PubMed          Journal:  Curr Protoc Neurosci        ISSN: 1934-8576


  8 in total

1.  Lossless compression of JPEG2000 whole slide images is not required for diagnostic virtual microscopy.

Authors:  Thomas Kalinski; Ralf Zwönitzer; Florian Grabellus; Sien-Yi Sheu; Saadettin Sel; Harald Hofmann; Albert Roessner
Journal:  Am J Clin Pathol       Date:  2011-12       Impact factor: 2.493

2.  Internet-enabled high-resolution brain mapping and virtual microscopy.

Authors:  Shawn Mikula; Issac Trotts; James M Stone; Edward G Jones
Journal:  Neuroimage       Date:  2007-01-16       Impact factor: 6.556

3.  The application of JPEG2000 in virtual microscopy.

Authors:  Vilppu J Tuominen; Jorma Isola
Journal:  J Digit Imaging       Date:  2007-11-13       Impact factor: 4.056

4.  Overview of telepathology, virtual microscopy, and whole slide imaging: prospects for the future.

Authors:  Ronald S Weinstein; Anna R Graham; Lynne C Richter; Gail P Barker; Elizabeth A Krupinski; Ana Maria Lopez; Kristine A Erps; Achyut K Bhattacharyya; Yukako Yagi; John R Gilbertson
Journal:  Hum Pathol       Date:  2009-06-24       Impact factor: 3.466

5.  An important landmark in scientific publishing.

Authors:  Harvey J Karten; Jack R Glaser; Patrick R Hof
Journal:  J Comp Neurol       Date:  2013-06-01       Impact factor: 3.215

6.  Retinorecipient areas in the diurnal murine rodent Arvicanthis niloticus: a disproportionally large superior colliculus.

Authors:  Frédéric Gaillard; Harvey J Karten; Yves Sauvé
Journal:  J Comp Neurol       Date:  2013-06-01       Impact factor: 3.215

7.  GENSAT BAC cre-recombinase driver lines to study the functional organization of cerebral cortical and basal ganglia circuits.

Authors:  Charles R Gerfen; Ronald Paletzki; Nathaniel Heintz
Journal:  Neuron       Date:  2013-12-18       Impact factor: 17.173

8.  What's in a picture? The temptation of image manipulation.

Authors:  Mike Rossner; Kenneth M Yamada
Journal:  J Cell Biol       Date:  2004-07-05       Impact factor: 10.539

  8 in total

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