Literature DB >> 25287667

Replicability and robustness of genome-wide-association studies for behavioral traits.

Cornelius A Rietveld1, Dalton Conley2, Nicholas Eriksson3, Tõnu Esko4, Sarah E Medland5, Anna A E Vinkhuyzen6, Jian Yang6, Jason D Boardman7, Christopher F Chabris8, Christopher T Dawes9, Benjamin W Domingue10, David A Hinds3, Magnus Johannesson11, Amy K Kiefer3, David Laibson12, Patrik K E Magnusson13, Joanna L Mountain3, Sven Oskarsson14, Olga Rostapshova12, Alexander Teumer15, Joyce Y Tung3, Peter M Visscher16, Daniel J Benjamin17, David Cesarini18, Philipp D Koellinger19.   

Abstract

A recent genome-wide-association study of educational attainment identified three single-nucleotide polymorphisms (SNPs) whose associations, despite their small effect sizes (each R (2) ≈ 0.02%), reached genome-wide significance (p < 5 × 10(-8)) in a large discovery sample and were replicated in an independent sample (p < .05). The study also reported associations between educational attainment and indices of SNPs called "polygenic scores." In three studies, we evaluated the robustness of these findings. Study 1 showed that the associations with all three SNPs were replicated in another large (N = 34,428) independent sample. We also found that the scores remained predictive (R (2) ≈ 2%) in regressions with stringent controls for stratification (Study 2) and in new within-family analyses (Study 3). Our results show that large and therefore well-powered genome-wide-association studies can identify replicable genetic associations with behavioral traits. The small effect sizes of individual SNPs are likely to be a major contributing factor explaining the striking contrast between our results and the disappointing replication record of most candidate-gene studies.
© The Author(s) 2014.

Entities:  

Keywords:  behavior genetics; educational attainment; genome-wide association study; individual differences; population stratification

Mesh:

Year:  2014        PMID: 25287667      PMCID: PMC4375246          DOI: 10.1177/0956797614545132

Source DB:  PubMed          Journal:  Psychol Sci        ISSN: 0956-7976


  24 in total

1.  Genetic signatures of strong recent positive selection at the lactase gene.

Authors:  Todd Bersaglieri; Pardis C Sabeti; Nick Patterson; Trisha Vanderploeg; Steve F Schaffner; Jared A Drake; Matthew Rhodes; David E Reich; Joel N Hirschhorn
Journal:  Am J Hum Genet       Date:  2004-04-26       Impact factor: 11.025

2.  Demonstrating stratification in a European American population.

Authors:  Catarina D Campbell; Elizabeth L Ogburn; Kathryn L Lunetta; Helen N Lyon; Matthew L Freedman; Leif C Groop; David Altshuler; Kristin G Ardlie; Joel N Hirschhorn
Journal:  Nat Genet       Date:  2005-07-24       Impact factor: 38.330

3.  Principal components analysis corrects for stratification in genome-wide association studies.

Authors:  Alkes L Price; Nick J Patterson; Robert M Plenge; Michael E Weinblatt; Nancy A Shadick; David Reich
Journal:  Nat Genet       Date:  2006-07-23       Impact factor: 38.330

4.  How to interpret a genome-wide association study.

Authors:  Thomas A Pearson; Teri A Manolio
Journal:  JAMA       Date:  2008-03-19       Impact factor: 56.272

5.  Editorial policy on candidate gene association and candidate gene-by-environment interaction studies of complex traits.

Authors:  John K Hewitt
Journal:  Behav Genet       Date:  2011-09-18       Impact factor: 2.805

6.  Web-based, participant-driven studies yield novel genetic associations for common traits.

Authors:  Nicholas Eriksson; J Michael Macpherson; Joyce Y Tung; Lawrence S Hon; Brian Naughton; Serge Saxonov; Linda Avey; Anne Wojcicki; Itsik Pe'er; Joanna Mountain
Journal:  PLoS Genet       Date:  2010-06-24       Impact factor: 5.917

7.  Hundreds of variants clustered in genomic loci and biological pathways affect human height.

Authors:  Hana Lango Allen; Karol Estrada; Guillaume Lettre; Sonja I Berndt; Michael N Weedon; Fernando Rivadeneira; Cristen J Willer; Anne U Jackson; Sailaja Vedantam; Soumya Raychaudhuri; Teresa Ferreira; Andrew R Wood; Robert J Weyant; Ayellet V Segrè; Elizabeth K Speliotes; Eleanor Wheeler; Nicole Soranzo; Ju-Hyun Park; Jian Yang; Daniel Gudbjartsson; Nancy L Heard-Costa; Joshua C Randall; Lu Qi; Albert Vernon Smith; Reedik Mägi; Tomi Pastinen; Liming Liang; Iris M Heid; Jian'an Luan; Gudmar Thorleifsson; Thomas W Winkler; Michael E Goddard; Ken Sin Lo; Cameron Palmer; Tsegaselassie Workalemahu; Yurii S Aulchenko; Asa Johansson; M Carola Zillikens; Mary F Feitosa; Tõnu Esko; Toby Johnson; Shamika Ketkar; Peter Kraft; Massimo Mangino; Inga Prokopenko; Devin Absher; Eva Albrecht; Florian Ernst; Nicole L Glazer; Caroline Hayward; Jouke-Jan Hottenga; Kevin B Jacobs; Joshua W Knowles; Zoltán Kutalik; Keri L Monda; Ozren Polasek; Michael Preuss; Nigel W Rayner; Neil R Robertson; Valgerdur Steinthorsdottir; Jonathan P Tyrer; Benjamin F Voight; Fredrik Wiklund; Jianfeng Xu; Jing Hua Zhao; Dale R Nyholt; Niina Pellikka; Markus Perola; John R B Perry; Ida Surakka; Mari-Liis Tammesoo; Elizabeth L Altmaier; Najaf Amin; Thor Aspelund; Tushar Bhangale; Gabrielle Boucher; Daniel I Chasman; Constance Chen; Lachlan Coin; Matthew N Cooper; Anna L Dixon; Quince Gibson; Elin Grundberg; Ke Hao; M Juhani Junttila; Lee M Kaplan; Johannes Kettunen; Inke R König; Tony Kwan; Robert W Lawrence; Douglas F Levinson; Mattias Lorentzon; Barbara McKnight; Andrew P Morris; Martina Müller; Julius Suh Ngwa; Shaun Purcell; Suzanne Rafelt; Rany M Salem; Erika Salvi; Serena Sanna; Jianxin Shi; Ulla Sovio; John R Thompson; Michael C Turchin; Liesbeth Vandenput; Dominique J Verlaan; Veronique Vitart; Charles C White; Andreas Ziegler; Peter Almgren; Anthony J Balmforth; Harry Campbell; Lorena Citterio; Alessandro De Grandi; Anna Dominiczak; Jubao Duan; Paul Elliott; Roberto Elosua; Johan G Eriksson; Nelson B Freimer; Eco J C Geus; Nicola Glorioso; Shen Haiqing; Anna-Liisa Hartikainen; Aki S Havulinna; Andrew A Hicks; Jennie Hui; Wilmar Igl; Thomas Illig; Antti Jula; Eero Kajantie; Tuomas O Kilpeläinen; Markku Koiranen; Ivana Kolcic; Seppo Koskinen; Peter Kovacs; Jaana Laitinen; Jianjun Liu; Marja-Liisa Lokki; Ana Marusic; Andrea Maschio; Thomas Meitinger; Antonella Mulas; Guillaume Paré; Alex N Parker; John F Peden; Astrid Petersmann; Irene Pichler; Kirsi H Pietiläinen; Anneli Pouta; Martin Ridderstråle; Jerome I Rotter; Jennifer G Sambrook; Alan R Sanders; Carsten Oliver Schmidt; Juha Sinisalo; Jan H Smit; Heather M Stringham; G Bragi Walters; Elisabeth Widen; Sarah H Wild; Gonneke Willemsen; Laura Zagato; Lina Zgaga; Paavo Zitting; Helene Alavere; Martin Farrall; Wendy L McArdle; Mari Nelis; Marjolein J Peters; Samuli Ripatti; Joyce B J van Meurs; Katja K Aben; Kristin G Ardlie; Jacques S Beckmann; John P Beilby; Richard N Bergman; Sven Bergmann; Francis S Collins; Daniele Cusi; Martin den Heijer; Gudny Eiriksdottir; Pablo V Gejman; Alistair S Hall; Anders Hamsten; Heikki V Huikuri; Carlos Iribarren; Mika Kähönen; Jaakko Kaprio; Sekar Kathiresan; Lambertus Kiemeney; Thomas Kocher; Lenore J Launer; Terho Lehtimäki; Olle Melander; Tom H Mosley; Arthur W Musk; Markku S Nieminen; Christopher J O'Donnell; Claes Ohlsson; Ben Oostra; Lyle J Palmer; Olli Raitakari; Paul M Ridker; John D Rioux; Aila Rissanen; Carlo Rivolta; Heribert Schunkert; Alan R Shuldiner; David S Siscovick; Michael Stumvoll; Anke Tönjes; Jaakko Tuomilehto; Gert-Jan van Ommen; Jorma Viikari; Andrew C Heath; Nicholas G Martin; Grant W Montgomery; Michael A Province; Manfred Kayser; Alice M Arnold; Larry D Atwood; Eric Boerwinkle; Stephen J Chanock; Panos Deloukas; Christian Gieger; Henrik Grönberg; Per Hall; Andrew T Hattersley; Christian Hengstenberg; Wolfgang Hoffman; G Mark Lathrop; Veikko Salomaa; Stefan Schreiber; Manuela Uda; Dawn Waterworth; Alan F Wright; Themistocles L Assimes; Inês Barroso; Albert Hofman; Karen L Mohlke; Dorret I Boomsma; Mark J Caulfield; L Adrienne Cupples; Jeanette Erdmann; Caroline S Fox; Vilmundur Gudnason; Ulf Gyllensten; Tamara B Harris; Richard B Hayes; Marjo-Riitta Jarvelin; Vincent Mooser; Patricia B Munroe; Willem H Ouwehand; Brenda W Penninx; Peter P Pramstaller; Thomas Quertermous; Igor Rudan; Nilesh J Samani; Timothy D Spector; Henry Völzke; Hugh Watkins; James F Wilson; Leif C Groop; Talin Haritunians; Frank B Hu; Robert C Kaplan; Andres Metspalu; Kari E North; David Schlessinger; Nicholas J Wareham; David J Hunter; Jeffrey R O'Connell; David P Strachan; H-Erich Wichmann; Ingrid B Borecki; Cornelia M van Duijn; Eric E Schadt; Unnur Thorsteinsdottir; Leena Peltonen; André G Uitterlinden; Peter M Visscher; Nilanjan Chatterjee; Ruth J F Loos; Michael Boehnke; Mark I McCarthy; Erik Ingelsson; Cecilia M Lindgren; Gonçalo R Abecasis; Kari Stefansson; Timothy M Frayling; Joel N Hirschhorn
Journal:  Nature       Date:  2010-09-29       Impact factor: 49.962

8.  Childhood intelligence is heritable, highly polygenic and associated with FNBP1L.

Authors:  B Benyamin; Bst Pourcain; O S Davis; G Davies; N K Hansell; M-J A Brion; R M Kirkpatrick; R A M Cents; S Franić; M B Miller; C M A Haworth; E Meaburn; T S Price; D M Evans; N Timpson; J Kemp; S Ring; W McArdle; S E Medland; J Yang; S E Harris; D C Liewald; P Scheet; X Xiao; J J Hudziak; E J C de Geus; V W V Jaddoe; J M Starr; F C Verhulst; C Pennell; H Tiemeier; W G Iacono; L J Palmer; G W Montgomery; N G Martin; D I Boomsma; D Posthuma; M McGue; M J Wright; G Davey Smith; I J Deary; R Plomin; P M Visscher
Journal:  Mol Psychiatry       Date:  2013-01-29       Impact factor: 15.992

9.  The impact of divergence time on the nature of population structure: an example from Iceland.

Authors:  Alkes L Price; Agnar Helgason; Snaebjorn Palsson; Hreinn Stefansson; David St Clair; Ole A Andreassen; David Reich; Augustine Kong; Kari Stefansson
Journal:  PLoS Genet       Date:  2009-06-05       Impact factor: 5.917

10.  Why most published research findings are false.

Authors:  John P A Ioannidis
Journal:  PLoS Med       Date:  2005-08-30       Impact factor: 11.613

View more
  40 in total

1.  Separating Measured Genetic and Environmental Effects: Evidence Linking Parental Genotype and Adopted Child Outcomes.

Authors:  Benjamin W Domingue; Jason Fletcher
Journal:  Behav Genet       Date:  2020-04-30       Impact factor: 2.805

2.  Mortality selection in a genetic sample and implications for association studies.

Authors:  Benjamin W Domingue; Daniel W Belsky; Amal Harrati; Dalton Conley; David R Weir; Jason D Boardman
Journal:  Int J Epidemiol       Date:  2017-08-01       Impact factor: 7.196

3.  Genetics of nurture: A test of the hypothesis that parents' genetics predict their observed caregiving.

Authors:  Jasmin Wertz; Jay Belsky; Terrie E Moffitt; Daniel W Belsky; HonaLee Harrington; Reut Avinun; Richie Poulton; Sandhya Ramrakha; Avshalom Caspi
Journal:  Dev Psychol       Date:  2019-03-28

4.  Genetic evidence for natural selection in humans in the contemporary United States.

Authors:  Jonathan P Beauchamp
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-11       Impact factor: 11.205

5.  Development and change in attachment: A multiwave assessment of attachment and its correlates across childhood and adolescence.

Authors:  Faaiza Khan; Jia Y Chong; Jaclyn C Theisen; R Chris Fraley; Jami F Young; Benjamin L Hankin
Journal:  J Pers Soc Psychol       Date:  2019-08-15

6.  Polygenic Influence on Educational Attainment: New evidence from The National Longitudinal Study of Adolescent to Adult Health.

Authors:  Benjamin W Domingue; Daniel Belsky; Dalton Conley; Kathleen Mullan Harris; Jason D Boardman
Journal:  AERA Open       Date:  2015-08-19

7.  The Effect of Vietnam-Era Conscription and Genetic Potential for Educational Attainment on Schooling Outcomes.

Authors:  Lauren L Schmitz; Dalton Conley
Journal:  Econ Educ Rev       Date:  2017-10-07

Review 8.  The genetics of human personality.

Authors:  S Sanchez-Roige; J C Gray; J MacKillop; C-H Chen; A A Palmer
Journal:  Genes Brain Behav       Date:  2017-12-29       Impact factor: 3.449

9.  Weak effects of common genetic variation in oxytocin and vasopressin receptor genes on rhesus macaque social behavior.

Authors:  Seth Madlon-Kay; Michael J Montague; Lauren J N Brent; Samuel Ellis; Brian Zhong; Noah Snyder-Mackler; Julie E Horvath; Jesse Haynes Pate Skene; Michael L Platt
Journal:  Am J Primatol       Date:  2018-06-21       Impact factor: 2.371

10.  The Fourth Law of Behavior Genetics.

Authors:  Christopher F Chabris; James J Lee; David Cesarini; Daniel J Benjamin; David I Laibson
Journal:  Curr Dir Psychol Sci       Date:  2015-07-01
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.