Literature DB >> 25285575

Protein backbone engineering as a strategy to advance foldamers toward the frontier of protein-like tertiary structure.

Zachary E Reinert1, W Seth Horne.   

Abstract

A variety of non-biological structural motifs have been incorporated into the backbone of natural protein sequences. In parallel work, diverse unnatural oligomers of de novo design (termed "foldamers") have been developed that fold in defined ways. In this Perspective article, we survey foundational studies on protein backbone engineering, with a focus on alterations made in the context of complex tertiary folds. We go on to summarize recent work illustrating the potential promise of these methods to provide a general framework for the construction of foldamer mimics of protein tertiary structures.

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Year:  2014        PMID: 25285575      PMCID: PMC4211622          DOI: 10.1039/c4ob01769b

Source DB:  PubMed          Journal:  Org Biomol Chem        ISSN: 1477-0520            Impact factor:   3.876


  72 in total

1.  Synthesis of a biologically active triazole-containing analogue of cystatin A through successive peptidomimetic alkyne-azide ligations.

Authors:  Ibai E Valverde; Fabien Lecaille; Gilles Lalmanach; Vincent Aucagne; Agnès F Delmas
Journal:  Angew Chem Int Ed Engl       Date:  2011-12-05       Impact factor: 15.336

2.  Extending foldamer design beyond α-helix mimicry: α/β-peptide inhibitors of vascular endothelial growth factor signaling.

Authors:  Holly S Haase; Kimberly J Peterson-Kaufman; Sheeny K Lan Levengood; James W Checco; William L Murphy; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2012-05-01       Impact factor: 15.419

3.  Peptide and peptoid foldamers in medicinal chemistry.

Authors:  W Seth Horne
Journal:  Expert Opin Drug Discov       Date:  2011-11-02       Impact factor: 6.098

4.  Synthesis, folding, and structure of the beta-turn mimic modified B1 domain of streptococcal protein G.

Authors:  B Odaert; F Jean; C Boutillon; E Buisine; O Melnyk; A Tartar; G Lippens
Journal:  Protein Sci       Date:  1999-12       Impact factor: 6.725

5.  Helix bundle quaternary structure from alpha/beta-peptide foldamers.

Authors:  W Seth Horne; Joshua L Price; James L Keck; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2007-03-16       Impact factor: 15.419

6.  Interplay among side chain sequence, backbone composition, and residue rigidification in polypeptide folding and assembly.

Authors:  W Seth Horne; Joshua L Price; Samuel H Gellman
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-27       Impact factor: 11.205

7.  Hairpin folding behavior of mixed α/β-peptides in aqueous solution.

Authors:  George A Lengyel; Rebecca C Frank; W Seth Horne
Journal:  J Am Chem Soc       Date:  2011-03-03       Impact factor: 15.419

8.  Expressed protein ligation: a general method for protein engineering.

Authors:  T W Muir; D Sondhi; P A Cole
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-09       Impact factor: 11.205

9.  Probing backbone hydrogen bonds in the hydrophobic core of GCN4.

Authors:  John W Blankenship; Rema Balambika; Philip E Dawson
Journal:  Biochemistry       Date:  2002-12-31       Impact factor: 3.162

10.  Localized thermodynamic coupling between hydrogen bonding and microenvironment polarity substantially stabilizes proteins.

Authors:  Jianmin Gao; Daryl A Bosco; Evan T Powers; Jeffery W Kelly
Journal:  Nat Struct Mol Biol       Date:  2009-06-14       Impact factor: 15.369

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  11 in total

1.  Heterochiral Knottin Protein: Folding and Solution Structure.

Authors:  Surin K Mong; Frank V Cochran; Hongtao Yu; Zachary Graziano; Yu-Shan Lin; Jennifer R Cochran; Bradley L Pentelute
Journal:  Biochemistry       Date:  2017-10-17       Impact factor: 3.162

2.  Heterogeneous-Backbone Foldamer Mimics of Zinc Finger Tertiary Structure.

Authors:  Kelly L George; W Seth Horne
Journal:  J Am Chem Soc       Date:  2017-06-05       Impact factor: 15.419

3.  Heterogeneous H-bonding in a foldamer helix.

Authors:  Brian F Fisher; Li Guo; Brian S Dolinar; Ilia A Guzei; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2015-05-14       Impact factor: 15.419

4.  Iterative Nonproteinogenic Residue Incorporation Yields α/β-Peptides with a Helix-Loop-Helix Tertiary Structure and High Affinity for VEGF.

Authors:  James W Checco; Samuel H Gellman
Journal:  Chembiochem       Date:  2017-01-09       Impact factor: 3.164

5.  Residue-Based Preorganization of BH3-Derived α/β-Peptides: Modulating Affinity, Selectivity and Proteolytic Susceptibility in α-Helix Mimics.

Authors:  Kimberly J Peterson-Kaufman; Holly S Haase; Melissa D Boersma; Erinna F Lee; W Douglas Fairlie; Samuel H Gellman
Journal:  ACS Chem Biol       Date:  2015-05-07       Impact factor: 5.100

6.  Proteomimetic Zinc Finger Domains with Modified Metal-binding β-Turns.

Authors:  Shilpa R Rao; W Seth Horne
Journal:  Pept Sci (Hoboken)       Date:  2020-06-07

7.  Comparison of design strategies for α-helix backbone modification in a protein tertiary fold.

Authors:  Nathan A Tavenor; Zachary E Reinert; George A Lengyel; Brian D Griffith; W Seth Horne
Journal:  Chem Commun (Camb)       Date:  2016-03-07       Impact factor: 6.222

8.  Heterogeneous-Backbone Foldamer Mimics of a Computationally Designed, Disulfide-Rich Miniprotein.

Authors:  Chino C Cabalteja; Daniel S Mihalko; W Seth Horne
Journal:  Chembiochem       Date:  2018-11-27       Impact factor: 3.164

9.  Peptide Backbone Composition and Protease Susceptibility: Impact of Modification Type, Position, and Tandem Substitution.

Authors:  Halina M Werner; Chino C Cabalteja; W Seth Horne
Journal:  Chembiochem       Date:  2015-08-20       Impact factor: 3.164

10.  Towards "bionic" proteins: replacement of continuous sequences from HIF-1α with proteomimetics to create functional p300 binding HIF-1α mimics.

Authors:  George M Burslem; Hannah F Kyle; Alexander L Breeze; Thomas A Edwards; Adam Nelson; Stuart L Warriner; Andrew J Wilson
Journal:  Chem Commun (Camb)       Date:  2016-04-07       Impact factor: 6.222

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