Literature DB >> 25284918

Targeted Local Support Vector Machine for Age-Dependent Classification.

Tianle Chen1, Yuanjia Wang1, Huaihou Chen2, Karen Marder3, Donglin Zeng4.   

Abstract

We develop methods to accurately predict whether pre-symptomatic individuals are at risk of a disease based on their various marker profiles, which offers an opportunity for early intervention well before definitive clinical diagnosis. For many diseases, existing clinical literature may suggest the risk of disease varies with some markers of biological and etiological importance, for example age. To identify effective prediction rules using nonparametric decision functions, standard statistical learning approaches treat markers with clear biological importance (e.g., age) and other markers without prior knowledge on disease etiology interchangeably as input variables. Therefore, these approaches may be inadequate in singling out and preserving the effects from the biologically important variables, especially in the presence of potential noise markers. Using age as an example of a salient marker to receive special care in the analysis, we propose a local smoothing large margin classifier implemented with support vector machine (SVM) to construct effective age-dependent classification rules. The method adaptively adjusts age effect and separately tunes age and other markers to achieve optimal performance. We derive the asymptotic risk bound of the local smoothing SVM, and perform extensive simulation studies to compare with standard approaches. We apply the proposed method to two studies of premanifest Huntington's disease (HD) subjects and controls to construct age-sensitive predictive scores for the risk of HD and risk of receiving HD diagnosis during the study period.

Entities:  

Keywords:  Huntington’s disease; Local smoothing; Reproducing kernel Hilbert space; Risk bound; Statistical learning

Year:  2014        PMID: 25284918      PMCID: PMC4183366          DOI: 10.1080/01621459.2014.881743

Source DB:  PubMed          Journal:  J Am Stat Assoc        ISSN: 0162-1459            Impact factor:   5.033


  19 in total

Review 1.  Limitations of the odds ratio in gauging the performance of a diagnostic, prognostic, or screening marker.

Authors:  Margaret Sullivan Pepe; Holly Janes; Gary Longton; Wendy Leisenring; Polly Newcomb
Journal:  Am J Epidemiol       Date:  2004-05-01       Impact factor: 4.897

Review 2.  Using Support Vector Machine to identify imaging biomarkers of neurological and psychiatric disease: a critical review.

Authors:  Graziella Orrù; William Pettersson-Yeo; Andre F Marquand; Giuseppe Sartori; Andrea Mechelli
Journal:  Neurosci Biobehav Rev       Date:  2012-01-28       Impact factor: 8.989

3.  Personal factors associated with reported benefits of Huntington disease family history or genetic testing.

Authors:  Janet K Williams; Cheryl Erwin; Andrew Juhl; James Mills; Bradley Brossman; Jane S Paulsen
Journal:  Genet Test Mol Biomarkers       Date:  2010-08-19

4.  Differences in duration of Huntington's disease based on age at onset.

Authors:  T Foroud; J Gray; J Ivashina; P M Conneally
Journal:  J Neurol Neurosurg Psychiatry       Date:  1999-01       Impact factor: 10.154

5.  A novel gene containing a trinucleotide repeat that is expanded and unstable on Huntington's disease chromosomes. The Huntington's Disease Collaborative Research Group.

Authors: 
Journal:  Cell       Date:  1993-03-26       Impact factor: 41.582

6.  On Efficient Large Margin Semisupervised Learning: Method and Theory.

Authors:  Junhui Wang; Xiaotong Shen; Wei Pan
Journal:  J Mach Learn Res       Date:  2009-03-01       Impact factor: 3.654

7.  Preparing for preventive clinical trials: the Predict-HD study.

Authors:  Jane S Paulsen; Michael Hayden; Julie C Stout; Douglas R Langbehn; Elizabeth Aylward; Christopher A Ross; Mark Guttman; Martha Nance; Karl Kieburtz; David Oakes; Ira Shoulson; Elise Kayson; Shannon Johnson; Elizabeth Penziner
Journal:  Arch Neurol       Date:  2006-06

8.  Predictors of diagnosis in Huntington disease.

Authors:  Douglas R Langbehn; Jane S Paulsen
Journal:  Neurology       Date:  2007-05-15       Impact factor: 9.910

9.  Characterization of a large group of individuals with huntington disease and their relatives enrolled in the COHORT study.

Authors:  E Ray Dorsey
Journal:  PLoS One       Date:  2012-02-16       Impact factor: 3.240

10.  From disease association to risk assessment: an optimistic view from genome-wide association studies on type 1 diabetes.

Authors:  Zhi Wei; Kai Wang; Hui-Qi Qu; Haitao Zhang; Jonathan Bradfield; Cecilia Kim; Edward Frackleton; Cuiping Hou; Joseph T Glessner; Rosetta Chiavacci; Charles Stanley; Dimitri Monos; Struan F A Grant; Constantin Polychronakos; Hakon Hakonarson
Journal:  PLoS Genet       Date:  2009-10-09       Impact factor: 5.917

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  3 in total

1.  Support Vector Hazards Machine: A Counting Process Framework for Learning Risk Scores for Censored Outcomes.

Authors:  Yuanjia Wang; Tianle Chen; Donglin Zeng
Journal:  J Mach Learn Res       Date:  2016-08-01       Impact factor: 3.654

2.  Time-varying Hazards Model for Incorporating Irregularly Measured, High-Dimensional Biomarkers.

Authors:  Xiang Li; Quefeng Li; Donglin Zeng; Karen Marder; Jane Paulsen; Yuanjia Wang
Journal:  Stat Sin       Date:  2020-07       Impact factor: 1.261

3.  The clinical decision analysis using decision tree.

Authors:  Jong-Myon Bae
Journal:  Epidemiol Health       Date:  2014-10-30
  3 in total

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