Literature DB >> 2528374

ADP release is rate limiting in steady-state turnover by the dynein adenosinetriphosphatase.

E L Holzbaur1, K A Johnson.   

Abstract

The kinetics of the product release steps in the pathway of ATP hydrolysis by dynein were investigated by examining the rate and partition coefficient of phosphate-water 18O exchange under equilibrium and steady-state conditions. Dynein catalyzed both medium and intermediate phosphate-water oxygen exchange with a partition coefficient of 0.30. The dependence of the rate of loss of the fully labeled phosphate species on the concentration of ADP was hyperbolic, with an apparent Kd for the binding of ADP to dynein of 0.085 mM. The apparent second-order rate constant for phosphate binding to the dynein-ADP complex was 8000 M-1 s-1. The time course of medium phosphate-water oxygen exchange during net ATP hydrolysis was examined in the presence of an ATP regeneration system. The observed rate of loss of P18O4 was comparable to the rate observed at saturating ADP which implies that ADP release is rate limiting for dynein in the steady state. Product inhibition of the dynein ATPase was also examined. ADP inhibited the enzyme competitively with a Ki of 0.4 mM. Phosphate was a linear noncompetitive mixed-type inhibitor with a Ki of 11 mM. These data were fit to a model in which phosphate release is fast and is followed by rate-limiting release of ADP, allowing us to define each rate constant in the pathway. A discrepancy between the total free energy calculated compared to the known free energy of ATP hydrolysis suggests that there is an additional step in the pathway, perhaps involving a change in conformation of the enzyme-ADP state preceding ADP release.

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Year:  1989        PMID: 2528374     DOI: 10.1021/bi00439a036

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  15 in total

1.  Nucleotide-induced global conformational changes of flagellar dynein arms revealed by in situ analysis.

Authors:  Tandis Movassagh; Khanh Huy Bui; Hitoshi Sakakibara; Kazuhiro Oiwa; Takashi Ishikawa
Journal:  Nat Struct Mol Biol       Date:  2010-05-09       Impact factor: 15.369

2.  Monte Carlo modeling of single-molecule cytoplasmic dynein.

Authors:  Manoranjan P Singh; Roop Mallik; Steven P Gross; Clare C Yu
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-15       Impact factor: 11.205

3.  Dynamic allostery of protein alpha helical coiled-coils.

Authors:  Rhoda J Hawkins; Tom C B McLeish
Journal:  J R Soc Interface       Date:  2006-02-22       Impact factor: 4.118

4.  The coordination of cyclic microtubule association/dissociation and tail swing of cytoplasmic dynein.

Authors:  Kenji Imamula; Takahide Kon; Reiko Ohkura; Kazuo Sutoh
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-02       Impact factor: 11.205

5.  Cooperativity in axonemal motion: analysis of a four-state, two-site kinetic model.

Authors:  C K Omoto; J S Palmer; M E Moody
Journal:  Proc Natl Acad Sci U S A       Date:  1991-07-01       Impact factor: 11.205

6.  Kinetic models for the coordinated stepping of cytoplasmic dynein.

Authors:  Denis Tsygankov; Adrian W R Serohijos; Nikolay V Dokholyan; Timothy C Elston
Journal:  J Chem Phys       Date:  2009-01-14       Impact factor: 3.488

7.  Angular measurements of the dynein ring reveal a stepping mechanism dependent on a flexible stalk.

Authors:  Lisa G Lippert; Tali Dadosh; Jodi A Hadden; Vishakha Karnawat; Benjamin T Diroll; Christopher B Murray; Erika L F Holzbaur; Klaus Schulten; Samara L Reck-Peterson; Yale E Goldman
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-22       Impact factor: 11.205

8.  A model describing bending in flagella.

Authors:  J E Schoutens
Journal:  J Biol Phys       Date:  2004-06       Impact factor: 1.365

9.  The winch model can explain both coordinated and uncoordinated stepping of cytoplasmic dynein.

Authors:  Andreja Šarlah; Andrej Vilfan
Journal:  Biophys J       Date:  2014-08-05       Impact factor: 4.033

10.  Helix sliding in the stalk coiled coil of dynein couples ATPase and microtubule binding.

Authors:  Takahide Kon; Kenji Imamula; Anthony J Roberts; Reiko Ohkura; Peter J Knight; I R Gibbons; Stan A Burgess; Kazuo Sutoh
Journal:  Nat Struct Mol Biol       Date:  2009-02-08       Impact factor: 15.369

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