Literature DB >> 25099805

The winch model can explain both coordinated and uncoordinated stepping of cytoplasmic dynein.

Andreja Šarlah1, Andrej Vilfan2.   

Abstract

Cytoplasmic dynein moves processively along microtubules, but the mechanism of how its heads use the energy from ATP hydrolysis, coupled to a linker swing, to achieve directed motion, is still unclear. In this article, we present a theoretical model based on the winch mechanism in which the principal direction of the linker stroke is toward the microtubule-binding domain. When mechanically coupling two identical heads (each with postulated elastic properties and a minimal ATPase cycle), the model reproduces stepping with 8-nm steps (even though the motor itself is much larger), interhead coordination, and processivity, as reported for mammalian dyneins. Furthermore, when we loosen the elastic connection between the heads, the model still shows processive directional stepping, but it becomes uncoordinated and the stepping pattern shows a greater variability, which reproduces the properties of yeast dyneins. Their slower chemical kinetics allows processive motility and a high stall force without the need for coordination.
Copyright © 2014 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 25099805      PMCID: PMC4129484          DOI: 10.1016/j.bpj.2014.06.022

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  57 in total

1.  Dynein structure and power stroke.

Authors:  Stan A Burgess; Matt L Walker; Hitoshi Sakakibara; Peter J Knight; Kazuhiro Oiwa
Journal:  Nature       Date:  2003-02-13       Impact factor: 49.962

Review 2.  Is the dynein motor a winch?

Authors:  Stan A Burgess; Peter J Knight
Journal:  Curr Opin Struct Biol       Date:  2004-04       Impact factor: 6.809

3.  Cytoplasmic dynein functions as a gear in response to load.

Authors:  Roop Mallik; Brian C Carter; Stephanie A Lex; Stephen J King; Steven P Gross
Journal:  Nature       Date:  2004-02-12       Impact factor: 49.962

4.  Dynamic allostery of protein alpha helical coiled-coils.

Authors:  Rhoda J Hawkins; Tom C B McLeish
Journal:  J R Soc Interface       Date:  2006-02-22       Impact factor: 4.118

5.  Multiple nucleotide-binding sites in the sequence of dynein beta heavy chain.

Authors:  I R Gibbons; B H Gibbons; G Mocz; D J Asai
Journal:  Nature       Date:  1991-08-15       Impact factor: 49.962

6.  Why kinesin is so processive.

Authors:  Erdal Toprak; Ahmet Yildiz; Melinda Tonks Hoffman; Steven S Rosenfeld; Paul R Selvin
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-15       Impact factor: 11.205

7.  Kinesin walks the line: single motors observed by atomic force microscopy.

Authors:  Iwan A T Schaap; Carolina Carrasco; Pedro J de Pablo; Christoph F Schmidt
Journal:  Biophys J       Date:  2011-05-18       Impact factor: 4.033

8.  How does a registry change in dynein's coiled-coil stalk drive binding of dynein to microtubules?

Authors:  Junghyun Choi; Hahnbeom Park; Chaok Seok
Journal:  Biochemistry       Date:  2011-08-10       Impact factor: 3.162

9.  A cytoplasmic dynein tail mutation impairs motor processivity.

Authors:  Kassandra M Ori-McKenney; Jing Xu; Steven P Gross; Richard B Vallee
Journal:  Nat Cell Biol       Date:  2010-11-21       Impact factor: 28.824

Review 10.  Big steps toward understanding dynein.

Authors:  Masahide Kikkawa
Journal:  J Cell Biol       Date:  2013-07-08       Impact factor: 10.539

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  6 in total

1.  Angular measurements of the dynein ring reveal a stepping mechanism dependent on a flexible stalk.

Authors:  Lisa G Lippert; Tali Dadosh; Jodi A Hadden; Vishakha Karnawat; Benjamin T Diroll; Christopher B Murray; Erika L F Holzbaur; Klaus Schulten; Samara L Reck-Peterson; Yale E Goldman
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-22       Impact factor: 11.205

2.  How Cytoplasmic Dynein Couples ATP Hydrolysis Cycle to Diverse Stepping Motions: Kinetic Modeling.

Authors:  Shintaroh Kubo; Tomohiro Shima; Shoji Takada
Journal:  Biophys J       Date:  2020-03-29       Impact factor: 4.033

3.  Minimum requirements for motility of a processive motor protein.

Authors:  Andreja Šarlah; Andrej Vilfan
Journal:  PLoS One       Date:  2017-10-10       Impact factor: 3.240

4.  A mathematical understanding of how cytoplasmic dynein walks on microtubules.

Authors:  L Trott; M Hafezparast; A Madzvamuse
Journal:  R Soc Open Sci       Date:  2018-08-08       Impact factor: 2.963

5.  Molecular mechanisms of the interhead coordination by interhead tension in cytoplasmic dyneins.

Authors:  Qian Wang; Biman Jana; Michael R Diehl; Margaret S Cheung; Anatoly B Kolomeisky; José N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  2018-09-17       Impact factor: 11.205

6.  Three-color single-molecule imaging reveals conformational dynamics of dynein undergoing motility.

Authors:  Stefan Niekamp; Nico Stuurman; Nan Zhang; Ronald D Vale
Journal:  Proc Natl Acad Sci U S A       Date:  2021-08-03       Impact factor: 11.205

  6 in total

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