Literature DB >> 25283243

Mechanism of DNA adsorption and desorption on graphene oxide.

Joon Soo Park1, Nam-In Goo, Dong-Eun Kim.   

Abstract

Graphene oxide (GO) adsorbing a fluorophore-labeled single-stranded (ss) DNA serves as a sensor system because subsequent desorption of the adsorbed probe DNA from GO in the presence of complementary target DNA enhances the fluorescence. In this study, we investigated the interaction of single- and double-stranded (ds) DNAs with GO by using a fluorescently labeled DNA probe. Although GO is known to preferentially interact with ssDNA, we found that dsDNA can also be adsorbed on GO, albeit with lower affinity. Furthermore, the status of ssDNA or dsDNA previously adsorbed on the GO surface was investigated by adding complementary or noncomplementary DNA (cDNA or non-cDNA) to the adsorption complex. We observed that hybridization occurred between the cDNA and the probe DNA on the GO surface. On the basis of the kinetics driven by the incoming additional DNA, we propose a mechanism for the desorption of the preadsorbed probe DNA from the GO surface: the desorption of the GO-adsorbed DNA was facilitated following its hybridization with cDNA on the GO surface; when the GO surface was almost saturated with the adsorbed DNA, nonspecific desorption dominated the process through a simple displacement of the GO-adsorbed DNA molecules by the incoming DNA molecules because of the law of mass action. Our results can be applied to design appropriate DNA probes and to choose proper GO concentrations for experimental setups to improve specific signaling in many biosensor systems based on the GO platform.

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Year:  2014        PMID: 25283243     DOI: 10.1021/la503401d

Source DB:  PubMed          Journal:  Langmuir        ISSN: 0743-7463            Impact factor:   3.882


  18 in total

1.  3' end of eae gene-based fluorescence DNA nanosensor for detection of E. coli O157:H7.

Authors:  Farrokh Karimi; Nasrin Balazadeh; Bagher Eftekhari-Sis
Journal:  J Appl Genet       Date:  2019-09-04       Impact factor: 3.240

2.  Extraction of microRNAs from biological matrices with titanium dioxide nanofibers.

Authors:  Luis A Jimenez; Marissa A Gionet-Gonzales; Sabrina Sedano; Jocelyn G Carballo; Yomara Mendez; Wenwan Zhong
Journal:  Anal Bioanal Chem       Date:  2017-10-13       Impact factor: 4.142

3.  Analysis of circulating non-coding RNAs in a non-invasive and cost-effective manner.

Authors:  Yu-Min Wang; Michael Patrick Trinh; Yongzan Zheng; Kaizhu Guo; Luis A Jimenez; Wenwan Zhong
Journal:  Trends Analyt Chem       Date:  2019-07-05       Impact factor: 12.296

Review 4.  Ten Years Progress of Electrical Detection of Heavy Metal Ions (HMIs) Using Various Field-Effect Transistor (FET) Nanosensors: A Review.

Authors:  Shaili Falina; Mohd Syamsul; Nuha Abd Rhaffor; Sofiyah Sal Hamid; Khairu Anuar Mohamed Zain; Asrulnizam Abd Manaf; Hiroshi Kawarada
Journal:  Biosensors (Basel)       Date:  2021-11-25

5.  Silver Nanoparticle-Embedded Thin Silica-Coated Graphene Oxide as an SERS Substrate.

Authors:  Xuan-Hung Pham; Eunil Hahm; Hyung-Mo Kim; Seongbo Shim; Tae Han Kim; Dae Hong Jeong; Yoon-Sik Lee; Bong-Hyun Jun
Journal:  Nanomaterials (Basel)       Date:  2016-09-22       Impact factor: 5.076

6.  Graphene oxide enhances the specificity of the polymerase chain reaction by modifying primer-template matching.

Authors:  Yuanyuan Wang; Fengbang Wang; Hailin Wang; Maoyong Song
Journal:  Sci Rep       Date:  2017-11-28       Impact factor: 4.379

Review 7.  Fluorogenic PNA probes.

Authors:  Tirayut Vilaivan
Journal:  Beilstein J Org Chem       Date:  2018-01-29       Impact factor: 2.883

8.  Optical Biosensing System for the Detection of Survivin mRNA in Colorectal Cancer Cells Using a Graphene Oxide Carrier-Bound Oligonucleotide Molecular Beacon.

Authors:  Katarzyna Ratajczak; Bartlomiej E Krazinski; Anna E Kowalczyk; Beata Dworakowska; Slawomir Jakiela; Magdalena Stobiecka
Journal:  Nanomaterials (Basel)       Date:  2018-07-09       Impact factor: 5.076

9.  Simple Detection of the IS6110 Sequence of Mycobacterium tuberculosis Complex in Sputum, Based on PCR with Graphene Oxide.

Authors:  Sang-Hyun Hwang; Dong-Eun Kim; Heungsup Sung; Byeong-Min Park; Mi-Jeong Cho; Ok-Jin Yoon; Do-Hoon Lee
Journal:  PLoS One       Date:  2015-08-31       Impact factor: 3.240

10.  Development of a graphene oxide-based assay for the sequence-specific detection of double-stranded DNA molecules.

Authors:  Anna Maria Giuliodori; Anna Brandi; Shivaram Kotla; Francesco Perrozzi; Roberto Gunnella; Luca Ottaviano; Roberto Spurio; Attilio Fabbretti
Journal:  PLoS One       Date:  2017-08-29       Impact factor: 3.240

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