Literature DB >> 25277299

Identification of a pentatricopeptide repeat RNA editing factor in Physcomitrella patens chloroplasts.

Mizuho Ichinose1, Masato Uchida1, Mamoru Sugita2.   

Abstract

The moss Physcomitrella patens has two RNA editing sites in the chloroplasts. Here we identified a novel DYW-subclass pentatricopeptide repeat (PPR) protein, PpPPR_45, as a chloroplast RNA editing factor in P. patens. Knockdown of the PpPPR_45 gene reduced the extent of RNA editing at the chloroplast rps14-C2 site, whereas over-expression of PpPPR_45 increased the levels of RNA editing at both the rps14-C2 site and its neighboring C site. This indicates that the expression level of PpPPR_45 affects the extent of RNA editing at the two neighboring sites.
Copyright © 2014 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Chloroplast; DYW domain; Pentatricopeptide repeat protein; Physcomitrella patens; RNA editing

Mesh:

Substances:

Year:  2014        PMID: 25277299     DOI: 10.1016/j.febslet.2014.09.031

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  9 in total

1.  One C-to-U RNA Editing Site and Two Independently Evolved Editing Factors: Testing Reciprocal Complementation with DYW-Type PPR Proteins from the Moss Physcomitrium (Physcomitrella) patens and the Flowering Plants Macadamia integrifolia and Arabidopsis.

Authors:  Bastian Oldenkott; Matthias Burger; Anke-Christiane Hein; Anja Jörg; Jennifer Senkler; Hans-Peter Braun; Volker Knoop; Mizuki Takenaka; Mareike Schallenberg-Rüdinger
Journal:  Plant Cell       Date:  2020-07-02       Impact factor: 11.277

Review 2.  RNA Editing and Its Molecular Mechanism in Plant Organelles.

Authors:  Mizuho Ichinose; Mamoru Sugita
Journal:  Genes (Basel)       Date:  2016-12-23       Impact factor: 4.096

3.  Expected and unexpected evolution of plant RNA editing factors CLB19, CRR28 and RARE1: retention of CLB19 despite a phylogenetically deep loss of its two known editing targets in Poaceae.

Authors:  Anke Hein; Volker Knoop
Journal:  BMC Evol Biol       Date:  2018-06-07       Impact factor: 3.260

4.  Identification of soybean trans-factors associated with plastid RNA editing sites.

Authors:  Nureyev F Rodrigues; Fábio C S Nogueira; Gilberto B Domont; Rogerio Margis
Journal:  Genet Mol Biol       Date:  2020-05-11       Impact factor: 1.771

5.  Plant organelle RNA editing and its specificity factors: enhancements of analyses and new database features in PREPACT 3.0.

Authors:  Henning Lenz; Anke Hein; Volker Knoop
Journal:  BMC Bioinformatics       Date:  2018-07-03       Impact factor: 3.169

6.  Plant-type pentatricopeptide repeat proteins with a DYW domain drive C-to-U RNA editing in Escherichia coli.

Authors:  Bastian Oldenkott; Yingying Yang; Elena Lesch; Volker Knoop; Mareike Schallenberg-Rüdinger
Journal:  Commun Biol       Date:  2019-03-01

Review 7.  An Overview of Pentatricopeptide Repeat (PPR) Proteins in the Moss Physcomitrium patens and Their Role in Organellar Gene Expression.

Authors:  Mamoru Sugita
Journal:  Plants (Basel)       Date:  2022-08-31

8.  Frequent chloroplast RNA editing in early-branching flowering plants: pilot studies on angiosperm-wide coexistence of editing sites and their nuclear specificity factors.

Authors:  Anke Hein; Monika Polsakiewicz; Volker Knoop
Journal:  BMC Evol Biol       Date:  2016-01-25       Impact factor: 3.260

9.  ECD1 functions as an RNA-editing trans-factor of rps14-149 in plastids and is required for early chloroplast development in seedlings.

Authors:  Tian Jiang; Jing Zhang; Liwei Rong; Yanjiang Feng; Qi Wang; Qiulai Song; Lixin Zhang; Min Ouyang
Journal:  J Exp Bot       Date:  2018-05-25       Impact factor: 6.992

  9 in total

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