Literature DB >> 25268466

Specific diagnosis of Opisthorchis viverrini using loop-mediated isothermal amplification (LAMP) targeting parasite microsatellites.

Yuji Arimatsu1, Sasithorn Kaewkes2, Thewarach Laha2, Banchob Sripa3.   

Abstract

Opisthorchis viverrini and other food-borne trematode infections are major health problems in Thailand, the Lao People's Democratic Republic, Vietnam and Cambodia. Differential diagnosis of O. viverrini based on the microscopic observation of parasite eggs is difficult in areas where Clonorchis sinensis and minute intestinal flukes coexist. Recently, loop-mediated isothermal amplification (LAMP) has been widely used for detection and identification of trematode for its simple method that is useful in low-resource or field settings. We have reported ITS1-LAMP assay to detect O. viverrini infection from human feces. The sensitivity and specificity of the test was 100% and 61.5%. The sensitivity of the test appeared to be higher than microscopic egg examination; however non-specific amplification from other parasites could not be ruled out. We therefore targeted microsatellites of O. viverrini that is a species specific sequence. By using hydroxyl naphthol blue (HNB)-LAMP, O. viverrini microsatellite 6 (OVMS6) could specifically amplify DNA from O. viverrini genome, but not other parasites such as C. sinensis, Opisthorchis felineus, Centrocestus caninus, Haplorchis taichui, Fasciola gigantica and Haplorchoodes sp. The detection limit of the test is 1 ng genomic DNA, which was 1000 times lower than the ITS1-LAMP, but targeting microstellites showed more specific detection of O. viverrini. In addition, the colorimetric LAMP assay was simple and effective; this makes it potentially applicable for point-of-care diagnosis.
Copyright © 2014. Published by Elsevier B.V.

Entities:  

Keywords:  LAMP; Microsatellite; Opisthorchis viverrini; Point-of-care diagnosis

Mesh:

Substances:

Year:  2014        PMID: 25268466      PMCID: PMC4454772          DOI: 10.1016/j.actatropica.2014.09.012

Source DB:  PubMed          Journal:  Acta Trop        ISSN: 0001-706X            Impact factor:   3.112


  21 in total

1.  Loop-mediated isothermal amplification of DNA.

Authors:  T Notomi; H Okayama; H Masubuchi; T Yonekawa; K Watanabe; N Amino; T Hase
Journal:  Nucleic Acids Res       Date:  2000-06-15       Impact factor: 16.971

2.  Microsatellites, from molecules to populations and back.

Authors:  P Jarne; P J Lagoda
Journal:  Trends Ecol Evol       Date:  1996-10       Impact factor: 17.712

3.  Sensitive and rapid detection of Clonorchis sinensis infection in fish by loop-mediated isothermal amplification (LAMP).

Authors:  X Q Cai; M J Xu; Y H Wang; D Y Qiu; G X Liu; A Lin; J D Tang; R L Zhang; X Q Zhu
Journal:  Parasitol Res       Date:  2010-03-16       Impact factor: 2.289

4.  Rapid detection of Opisthorchis viverrini copro-DNA using loop-mediated isothermal amplification (LAMP).

Authors:  Yuji Arimatsu; Sasithorn Kaewkes; Thewarach Laha; Sung-Jong Hong; Banchob Sripa
Journal:  Parasitol Int       Date:  2011-08-16       Impact factor: 2.230

5.  Rapid identification and differentiation of Fasciola hepatica and Fasciola gigantica by a loop-mediated isothermal amplification (LAMP) assay.

Authors:  L Ai; C Li; H M Elsheikha; S J Hong; J X Chen; S H Chen; X Li; X Q Cai; M X Chen; X Q Zhu
Journal:  Vet Parasitol       Date:  2010-09-21       Impact factor: 2.738

6.  Sensitive and rapid detection of Paragonimus westermani infection in humans and animals by loop-mediated isothermal amplification (LAMP).

Authors:  M X Chen; L Ai; R L Zhang; J J Xia; K Wang; S H Chen; Y N Zhang; M J Xu; X Li; X Q Zhu; J X Chen
Journal:  Parasitol Res       Date:  2010-11-25       Impact factor: 2.289

7.  Discrimination of O. viverrini, C. sinensis, H. pumilio and H. taichui using nuclear DNA-based PCR targeting ribosomal DNA ITS regions.

Authors:  Megumi Sato; Urusa Thaenkham; Paron Dekumyoy; Jitra Waikagul
Journal:  Acta Trop       Date:  2008-10-04       Impact factor: 3.112

8.  Microsatellite loci in the carcinogenic liver fluke, Opisthorchis viverrini and their application as population genetic markers.

Authors:  Nonglak Laoprom; Paiboon Sithithaworn; Katsuhiko Ando; Jiraporn Sithithaworn; Sopit Wongkham; Thewarach Laha; Sirawut Klinbunga; Joanne P Webster; Ross H Andrews
Journal:  Infect Genet Evol       Date:  2009-11-10       Impact factor: 3.342

Review 9.  Food-borne intestinal trematodiases in humans.

Authors:  Bernard Fried; Thaddeus K Graczyk; Leena Tamang
Journal:  Parasitol Res       Date:  2004-04-21       Impact factor: 2.289

10.  Colorimetric detection of loop-mediated isothermal amplification reaction by using hydroxy naphthol blue.

Authors:  Motoki Goto; Eiichi Honda; Atsuo Ogura; Akio Nomoto; Ken-Ichi Hanaki
Journal:  Biotechniques       Date:  2009-03       Impact factor: 1.993

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  8 in total

1.  Chicken IgY-based coproantigen capture ELISA for diagnosis of human opisthorchiasis.

Authors:  Salma Teimoori; Yuji Arimatsu; Thewarach Laha; Sasithorn Kaewkes; Piya Sereerak; Manop Sripa; Sirikachorn Tangkawattana; Paul J Brindley; Banchob Sripa
Journal:  Parasitol Int       Date:  2016-04-29       Impact factor: 2.230

2.  A simple, high-throughput, colourimetric, field applicable loop-mediated isothermal amplification (HtLAMP) assay for malaria elimination.

Authors:  Sumudu Britton; Qin Cheng; Colin J Sutherland; James S McCarthy
Journal:  Malar J       Date:  2015-08-28       Impact factor: 2.979

3.  LAMPhimerus: A novel LAMP assay for detecting Amphimerus sp. DNA in human stool samples.

Authors:  William Cevallos; Pedro Fernández-Soto; Manuel Calvopiña; Cristina Fontecha-Cuenca; Hiromu Sugiyama; Megumi Sato; Julio López Abán; Belén Vicente; Antonio Muro
Journal:  PLoS Negl Trop Dis       Date:  2017-06-19

Review 4.  Detection of helminths by loop-mediated isothermal amplification assay: a review of updated technology and future outlook.

Authors:  Miao-Han Deng; Lan-Yi Zhong; Okanurak Kamolnetr; Yanin Limpanont; Zhi-Yue Lv
Journal:  Infect Dis Poverty       Date:  2019-03-25       Impact factor: 4.520

Review 5.  Surveillance and diagnosis of zoonotic foodborne parasites.

Authors:  Reza Zolfaghari Emameh; Sami Purmonen; Antti Sukura; Seppo Parkkila
Journal:  Food Sci Nutr       Date:  2017-11-12       Impact factor: 2.863

6.  Application of a loop-mediated isothermal amplification (LAMP) assay targeting cox1 gene for the detection of Clonorchis sinensis in human fecal samples.

Authors:  S M Mazidur Rahman; Hyun Beom Song; Yan Jin; Jin-Kyoung Oh; Min Kyung Lim; Sung-Tae Hong; Min-Ho Choi
Journal:  PLoS Negl Trop Dis       Date:  2017-10-09

7.  Detection of Spiked Fasciola hepatica Eggs in Stool Specimens Using LAMP Technique.

Authors:  Sahar Ghodsian; Soheila Rouhani; Shirzad Fallahi; Seyyed Javad Seyyedtabaei; Niloofar Taghipour
Journal:  Iran J Parasitol       Date:  2019 Jul-Sep       Impact factor: 1.012

8.  Rapid detection of Galba truncatula in water sources on pasture-land using loop-mediated isothermal amplification for control of trematode infections.

Authors:  Chelsea N Davis; Fiona Tyson; David Cutress; Emma Davies; Dewi Llyr Jones; Peter M Brophy; Alex Prescott; Michael T Rose; Manod Williams; Hefin Wyn Williams; Rhys Aled Jones
Journal:  Parasit Vectors       Date:  2020-09-30       Impact factor: 3.876

  8 in total

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