Literature DB >> 25265624

Small blob identification in medical images using regional features from optimum scale.

Min Zhang, Teresa Wu, Kevin M Bennett.   

Abstract

Recent advances in medical imaging technology have greatly enhanced imaging-based diagnosis which requires computational effective and accurate algorithms to process the images (e.g., measure the objects) for quantitative assessment. In this research, we are interested in one type of imaging objects: small blobs. Examples of small blob objects are cells in histopathology images, glomeruli in MR images, etc. This problem is particularly challenging because the small blobs often have in homogeneous intensity distribution and an indistinct boundary against the background. Yet, in general, these blobs have similar sizes. Motivated by this finding, we propose a novel detector termed Hessian-based Laplacian of Gaussian (HLoG) using scale space theory as the foundation. Like most imaging detectors, an image is first smoothed via LoG. Hessian analysis is then launched to identify the single optimal scale on which a presegmentation is conducted. The advantage of the Hessian process is that it is capable of delineating the blobs. As a result, regional features can be retrieved. These features enable an unsupervised clustering algorithm for postpruning which should be more robust and sensitive than the traditional threshold-based postpruning commonly used in most imaging detectors. To test the performance of the proposed HLoG, two sets of 2-D grey medical images are studied. HLoG is compared against three state-of-the-art detectors: generalized LoG, Radial-Symmetry and LoG using precision, recall, and F-score metrics.We observe that HLoG statistically outperforms the compared detectors.

Mesh:

Year:  2015        PMID: 25265624     DOI: 10.1109/TBME.2014.2360154

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  11 in total

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Review 3.  Robust Nucleus/Cell Detection and Segmentation in Digital Pathology and Microscopy Images: A Comprehensive Review.

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4.  Biocompatibility of ferritin-based nanoparticles as targeted MRI contrast agents.

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Journal:  Nanomedicine       Date:  2016-04-09       Impact factor: 5.307

5.  Advanced CUBIC tissue clearing for whole-organ cell profiling.

Authors:  Katsuhiko Matsumoto; Tomoki T Mitani; Shuhei A Horiguchi; Junichi Kaneshiro; Tatsuya C Murakami; Tomoyuki Mano; Hiroshi Fujishima; Ayumu Konno; Tomonobu M Watanabe; Hirokazu Hirai; Hiroki R Ueda
Journal:  Nat Protoc       Date:  2019-11-20       Impact factor: 13.491

6.  Image analysis techniques to map pyramids, pyramid structure, glomerular distribution, and pathology in the intact human kidney from 3-D MRI.

Authors:  Jennifer R Charlton; Yanzhe Xu; Neda Parvin; Teresa Wu; Fei Gao; Edwin J Baldelomar; Darya Morozov; Scott C Beeman; Jamal Derakhshan; Kevin M Bennett
Journal:  Am J Physiol Renal Physiol       Date:  2021-07-20

7.  Small Blob Detector Using Bi-Threshold Constrained Adaptive Scales.

Authors:  Yanzhe Xu; Teresa Wu; Jennifer R Charlton; Fei Gao; Kevin M Bennett
Journal:  IEEE Trans Biomed Eng       Date:  2021-08-23       Impact factor: 4.756

8.  Nephron number and its determinants: a 2020 update.

Authors:  Jennifer R Charlton; Edwin J Baldelomar; Dylan M Hyatt; Kevin M Bennett
Journal:  Pediatr Nephrol       Date:  2020-04-29       Impact factor: 3.714

9.  Automated Detection of Lupus White Matter Lesions in MRI.

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Journal:  Front Neuroinform       Date:  2016-08-12       Impact factor: 4.081

10.  The Hessian Blob Algorithm: Precise Particle Detection in Atomic Force Microscopy Imagery.

Authors:  Brendan P Marsh; Nagaraju Chada; Raghavendar Reddy Sanganna Gari; Krishna P Sigdel; Gavin M King
Journal:  Sci Rep       Date:  2018-01-17       Impact factor: 4.379

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