Literature DB >> 25262989

Coupled-cluster interaction energies for 200-atom host-guest systems.

Milica Andrejić1, Ulf Ryde, Ricardo A Mata, Pär Söderhjelm.   

Abstract

We have developed a method to calculate interaction energies of large systems (such as host-guest or even protein-ligand systems) at the local coupled-cluster with singles, doubles, and perturbative triples level, and with extrapolation to the limit of a complete basis set. The method is based on the polarizable multipole interactions with supermolecular pairs molecular fractionation approach, which combines a pairwise quantum-mechanical evaluation of the short-range interactions with a polarizable multipole treatment of many-body effects. The method is tested for nine guest molecules binding to an octa-acid host (in total 198-207 atoms), as part of the SAMPL4 blind challenge. From the test calculations, the accuracy of the approach is found to be 10 kJ mol(-1) or better. Comparison with dispersion-corrected density functional theory reveals that the latter underestimates the dispersion contribution for this type of system, which leads to a difference in the ranking of the ligands.
© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  cluster compounds; ligand binding; molecular fractionation; polarizable force fields; quantum chemistry

Year:  2014        PMID: 25262989     DOI: 10.1002/cphc.201402379

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  4 in total

1.  Binding free energies in the SAMPL6 octa-acid host-guest challenge calculated with MM and QM methods.

Authors:  Octav Caldararu; Martin A Olsson; Majda Misini Ignjatović; Meiting Wang; Ulf Ryde
Journal:  J Comput Aided Mol Des       Date:  2018-09-10       Impact factor: 3.686

Review 2.  Recent Progress in Treating Protein-Ligand Interactions with Quantum-Mechanical Methods.

Authors:  Nusret Duygu Yilmazer; Martin Korth
Journal:  Int J Mol Sci       Date:  2016-05-16       Impact factor: 5.923

3.  Converging ligand-binding free energies obtained with free-energy perturbations at the quantum mechanical level.

Authors:  Martin A Olsson; Pär Söderhjelm; Ulf Ryde
Journal:  J Comput Chem       Date:  2016-04-27       Impact factor: 3.376

4.  Binding free energies in the SAMPL5 octa-acid host-guest challenge calculated with DFT-D3 and CCSD(T).

Authors:  Octav Caldararu; Martin A Olsson; Christoph Riplinger; Frank Neese; Ulf Ryde
Journal:  J Comput Aided Mol Des       Date:  2016-09-06       Impact factor: 3.686

  4 in total

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