| Literature DB >> 25255852 |
Jamila Alessandra Perini1, Jessica Vilarinho Cardoso, Plínio Tostes Berardo, Rosane Vianna-Jorge, Luiz Eurico Nasciutti, Marta Bellodi-Privato, Daniel Escorsim Machado, Mauricio Simões Abrão.
Abstract
BACKGROUND: Endometriosis is regarded as a complex and heterogeneous disease in which genetic and environmental factors contribute to the phenotype. The Vascular Endothelial Growth Factor (VEGF) plays important roles in the pathogenesis of endometriosis. The present study was aimed at investigating the contribution of VEGF polymorphisms as risk factors for the development of endometriosis. This is the first study to evaluate the combined influence of the five most common VEGF polymorphisms.Entities:
Mesh:
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Year: 2014 PMID: 25255852 PMCID: PMC4261242 DOI: 10.1186/1472-6874-14-117
Source DB: PubMed Journal: BMC Womens Health ISSN: 1472-6874 Impact factor: 2.809
Characterization of polymorphisms, probes and primers sequences for genotyping by TaqMan real time PCR
| Identified SNP | TaqMan assays | Region | Probe [SNP] | Primer |
|---|---|---|---|---|
| rs699947 | C_8311602_10 | PR | GCCAGCTGTAGGCCAGACCCTGGCA | 5′-GGATGGGGCTGACT AGGTAAGC-3′ |
| 5′-AGCCCCCTTTTCCT CCAAC-3′ | ||||
| rs833061 | C_1647381_10 | PR | GAGTGTGTGCGTGTGGGGTTGAGGG | 5′-TGTGCGTGTGGGGTTGAGAG-3′ |
| 5′-TACGTGCGGACAGGGCCTGA-3′ | ||||
| rs1570360 | C_1647379_10 | PR | AGCCCGGGCCCGAGCCGCGTGTGGA | 5′-TCCTGCTCCCTCCT CGCCAATG-3′ |
| 5′-GGCGGGGACAGGC GAGCATC-3′ | ||||
| rs2010963 | C_8311614_10 | 5′-UTR | CGCGCGGGCGTGCGAGCAGCGAAAG | 5′-TTGCTTGCCATTCCCCACTTGA-3′ |
| 5′-CCGAAGCGAGAACAGCCCAGAA-3′ | ||||
| rs3025039 | C_16198794_10 | 3′-UTR | GCATTCCCGGGCGGGTGACCCAGCA | 5′-AAGGAAGAGGAGAC TCTGCGC-3′ |
| 5′-TATGTGGGTGGGT GTGTCTACAG-3′ |
PR is Promoter Region, 5′-UTR is 5′-Untranslated Region, 3′-UTR is 3′-Untranslated Region.
Demographics and clinical characteristics of the endometriosis patients and controls
| Variable | Controls | Endometriosis |
|
|---|---|---|---|
| No (%) | No (%) | ||
| BMI | |||
| <18.5 | 3 (3.4) | 13 (7.7) | <0.001 |
| 18.5 ≤ BMI ≤ 24.9 | 31 (34.8) | 113 (67.3) | |
| 25 ≤ BMI ≤ 29.9 | 25 (28.1) | 31 (18.5) | |
| 30 ≤ BMI < 40 | 27 (30.3) | 11 (6.5) | |
| ≤ 40 | 3 (3.4) | 0 (0) | |
| Parity | |||
| 0 | 21 (22.1) | 116 (66.3) | <0.001 |
| 1 | 14 (14.7) | 35 (20.0) | |
| 2 | 26 (27.4) | 18 (10.3) | |
| ≤ 3 | 34 (35.8) | 6 (3.4) | |
| Spontaneous abortion | 21 (22.8) | 22 (12.6%) | 0.032 |
| Infertility | |||
| No | 88 (92.6) | 93 (53.1) | <0.001 |
| Primary | 6 (6.3) | 60 (34.3) | |
| Secondary | 1 (1.1) | 22 (12.6) | |
| Symptoma | |||
| Dysmenorrhoea | 21 (22.3) | 91 (51.7) | <0.001 |
| Non-cyclic chronic pelvic pain | 36 (38.3) | 91 (51.7) | 0.036 |
| Deep dyspareunia | 12 (12.9) | 100 (57.5) | <0.001 |
BMI is Body mass index. aA patient can have more than one concomitant symptom; bChi-Square Test or Fisher’s exact test.
Figure 1Allelic frequencies of polymorphism in cases and controls. P value from Chi-square test (Pearson p-value).
Genotypic distribution of SNPs in endometriosis patients and controls
| SNP | Population | N* | Genotypic distribution N (%) | P χ 2 | ||
|---|---|---|---|---|---|---|
|
|
|
|
| |||
| Controls | 111 | 50 (45.0) | 47 (42.3) | 14 (12.7) | 0.19 | |
| Cases | 178 | 61 (34.3) | 90 (50.6) | 27 (15.1) | ||
|
|
|
|
| |||
| Controls | 107 | 39 (36.4) | 51 (47.7) | 17 (15.9) | 0.50 | |
| Cases | 179 | 54 (30.2) | 97 (54.2) | 28 (15.6) | ||
|
|
|
|
| |||
| Controls | 106 | 74 (69.8) | 30 (28.3) | 2 (1.9) | 0.01 | |
| Cases | 161 | 90 (55.9) | 56 (34.8) | 15 (9.3) | ||
|
|
|
|
| |||
| Controls | 110 | 38 (34.6) | 56 (50.9) | 16 (14.5) | 0.16 | |
| Cases | 181 | 83 (45.9) | 75 (41.4) | 23 (12.7) | ||
|
|
|
|
| |||
| Controls | 95 | 67 (70.5) | 27 (28.4) | 1 (1.1) | 0.63 | |
| Cases | 165 | 120 (72.8) | 41 (24.8) | 4 (2.4) | ||
N* is the number of examined samples of cases and controls for each SNP. Differences in sample sizes are due to available data from PCR amplification for each SNP. P χ2 is P from Chi-square test (Pearson p-value) or Fisher’s exact test.
Association analyses of the -1154G > A polymorphism in endometriosis patients compared with women without disease
| -1154G > A | Controls | Cases | OR (95% IC) b | DIE Cases | OR (95% IC) c | Stages III-IV | OR (95% IC) d |
|---|---|---|---|---|---|---|---|
| (n = 106) | (n = 161) | (n = 131) | (n = 97) | ||||
| N (%) | N (%) | N (%) | N (%) | ||||
|
| |||||||
|
| 74 (69.8) | 90 (55.9) | 1a | 75 (57.3) | 1a | 56 (57.7) | 1a |
|
| 30 (28.3) | 56 (34.8) | 1.54 (0.90 - 2.63) | 44 (33.6) | 1.45 (0.82 - 2.54) | 29 (29.9) | 1.28 (0.69 - 2.37) |
|
| 2 (1.9) | 15 (9.3) | 6.17 (1.37 - 27.8) | 12 (9.1) | 5.92 (1.28 - 27.4) | 12 (12.4) | 7.93 (1.70 - 36.9) |
|
| 32 (30.2) | 71 (44.1) | 1.82 (1.09 - 3.06) | 56 (42.7) | 1.73 (1.01 - 2.96) | 41 (42.3) | 1.69 (0.95 - 3.02) |
|
| |||||||
|
| 178 (84.0) | 236 (73.3) | 1a | 194 (74.1) | 1a | 141 (72.7) | 1a |
|
| 34 (16.0) | 86 (26.7) | 1.90 (1.23 - 2.97) | 68 (25.9) | 1.83 (1.16 - 2.90) | 53 (27.3) | 1.97 (1.21 - 3.19) |
OR is odds ratio, CI is confidence interval. aReference Group; bControls vs. Cases (All patients with endometriosis); cControls vs. Deeply infiltrating endometriosis patients (DIE); dControls vs. Moderate or severe endometriosis patients (stages III or IV). Due to insufficient DNA samples, some of the patients were not genotyped for -1154G > A SNP.
Figure 2Haplotype association analysis for the five polymorphisms in a Brazilian women. Number in boxes indicates decimal places of D’. A Haplotype association analysis in all patients Brazilian women; B cases with endometriosis and C controls were estimated utilising Haploview program based on the Expectation-Maximization algorithm. There was a strong linkage disequilibrium patterns across the -2578C>A (lane 1), -460T>C (lane 2), -1154G>A (lane 3) and +405G>C (lane 4) VEGF SNPs of the three studies groups, while +936C>T (lane 5) was not linked to the other polymorphisms.
Haplotype distributions of olymorphisms in cases and controls and their association with the risk of developing endometriosis
| -2578C > A/ -460 T > C/ -1154G > A/ +405G > C | Controls | All Cases |
| OR (95% CI) c | DIE Cases |
| OR (95% IC) d | Stages III-IV |
| OR (95% IC) e |
|---|---|---|---|---|---|---|---|---|---|---|
| (N = 112) | (N = 182) | (N = 151) | (N = 110) | |||||||
| N (%) | ||||||||||
| N (%) | ||||||||||
| No (%) | No (%) | |||||||||
| CTGG | 42 (18.7) | 85 (23.4) | 1a | 69 (22.9) | 1a | 55 (25.0) | 1a | |||
| CTGC | 90 (40.1) | 121 (33.2) | 0.10 | 0.66 (0.42 – 1.05) | 104 (34.4) | 0.18 | 0.70 (0.44 – 1.13) | 69 (31.3) | 0.05 | 0.58 (0.35 – 0.97) |
| ACAG | 36 (16.0) | 96 (26.4) | 0.38 | 1.32 (0.77 – 2.24) | 78 (25.8) | 0.40 | 1.32 (0.76 – 2.29) | 58 (26.4) | 0.58 | 1.23 (0.69 – 2.19) |
| ACGG | 37 (16.5) | 51 (14.0) | 0.23 | 0.68 (0.39 – 1.19) | 42 (13.9) | 0.27 | 0.69 (0.38 – 1.24) | 31 (14.1) | 0.21 | 0.64 (0.34 – 1.19) |
| CCGG | 15 (6.7) | 11 (3.0) | 0.03 | 0.36 (0.15 – 0.86) | 9 (3.0) | 0.05 | 0.37 (0.15 – 0.90) | 7 (3.2) | 0.05 | 0.35 (0.13 – 0.95) |
| ATGG | 4 (2.0) | 0 (0.0) | 0.03 | - | 0 (0.0) | 0.05 | - | 0 (0.0) | 0.09 | - |
OR is odds ratio, CI is confidence interval. aReference Group; bChi-Square Test or Fisher’s exact test; cControls vs. Cases (All patients with endometriosis); dControls vs. Deeply infiltrating endometriosis patients (DIE); eControls vs. Moderate or severe endometriosis patients (stages III or IV).