Literature DB >> 25249922

Pelanserin: 3-[3-(4-phenyl-piperazin-1-yl)prop-yl]quinazoline-2,4(1H,3H)-dione.

Gerardo Aguirre Hernández1, Ratnasamy Somanathan1, Sylvain Bernès2.   

Abstract

The title compound, C21H24N4O2, is a potent serotonin 5-HT2 and α1-adrenoceptor antagonist. The n-propyl chain links the quinazolinedione heterocycle and the phenyl-piperazine group in which the benzene ring is equatorially located and the piperazine ring has the expected chair conformation. The dihedral angle between the planes of the benzene ring and the quinazolinedione ring system is 74.1 (1)°. In the crystal, mol-ecules form centrosymmetric dimers through R 2 (2)(8) hydrogen-bonded rings involving the amine and one carbonyl group of the quinazolinedione moiety. These dimers are extended into chains extending along the a-axis direction through expanded centrosymmetric cyclic C-H⋯O associations involving the second carbonyl group, giving R 2 (2)(20) and R 1 (2)(7) motifs.

Entities:  

Keywords:  crystal structure

Year:  2014        PMID: 25249922      PMCID: PMC4158516          DOI: 10.1107/S160053681401602X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of pelanserin, see: Cortez et al. (1991 ▶); Garcia et al. (2000 ▶); Li et al. (2011 ▶). For the pharmacology of pelanserin, see: Flores-Murrieta et al. (1990 ▶, 1992 ▶); Villalobos-Molina et al. (1995 ▶). For the structure of quinazoline-2,4(1H,3H)-dione, see: Liu (2008 ▶).

Experimental

Crystal data

C21H24N4O2 M = 364.44 Monoclinic, a = 15.7531 (17) Å b = 5.4345 (10) Å c = 22.756 (3) Å β = 104.506 (9)° V = 1886.0 (5) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.60 × 0.30 × 0.10 mm

Data collection

Bruker P4 diffractometer 3452 measured reflections 3323 independent reflections 1301 reflections with I > 2σ(I) R int = 0.077 3 standard reflections every 97 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.072 wR(F 2) = 0.148 S = 0.99 3323 reflections 247 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.19 e Å−3 Data collection: XSCANS (Siemens, 1996 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS2013 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL2013. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681401602X/zs2304sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681401602X/zs2304Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S160053681401602X/zs2304Isup3.cml CCDC reference: 1013055 Additional supporting information: crystallographic information; 3D view; checkCIF report
C21H24N4O2Dx = 1.283 Mg m3
Mr = 364.44Melting point = 463–465 K
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 15.7531 (17) ÅCell parameters from 33 reflections
b = 5.4345 (10) Åθ = 4.7–10.7°
c = 22.756 (3) ŵ = 0.09 mm1
β = 104.506 (9)°T = 296 K
V = 1886.0 (5) Å3Plate, yellow
Z = 40.60 × 0.30 × 0.10 mm
F(000) = 776
Bruker P4 diffractometerRint = 0.077
Radiation source: fine-focus sealed tubeθmax = 25.0°, θmin = 2.5°
Graphite monochromatorh = 0→18
2θ/ω scansk = 0→6
3452 measured reflectionsl = −27→26
3323 independent reflections3 standard reflections every 97 reflections
1301 reflections with I > 2σ(I) intensity decay: 1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.072Hydrogen site location: mixed
wR(F2) = 0.148H atoms treated by a mixture of independent and constrained refinement
S = 0.99w = 1/[σ2(Fo2) + (0.0399P)2] where P = (Fo2 + 2Fc2)/3
3323 reflections(Δ/σ)max < 0.001
247 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.19 e Å3
0 constraints
xyzUiso*/Ueq
N10.8261 (2)0.4446 (7)0.56297 (15)0.0441 (10)
C20.8955 (3)0.4694 (10)0.5359 (2)0.0476 (13)
O20.90428 (19)0.3299 (6)0.49494 (13)0.0615 (10)
N30.9524 (2)0.6547 (8)0.55692 (17)0.0510 (11)
H31.004 (3)0.669 (8)0.5430 (17)0.061*
C40.9477 (3)0.8081 (9)0.60436 (19)0.0437 (12)
C51.0100 (3)0.9929 (9)0.6239 (2)0.0530 (14)
H5A1.05561.01360.60510.064*
C61.0035 (3)1.1443 (10)0.6712 (2)0.0602 (14)
H6A1.04471.26810.68420.072*
C70.9361 (3)1.1131 (10)0.6995 (2)0.0592 (14)
H7A0.93261.21430.73180.071*
C80.8741 (3)0.9326 (9)0.6800 (2)0.0536 (14)
H8A0.82820.91450.69860.064*
C90.8798 (3)0.7762 (9)0.63228 (18)0.0416 (12)
C100.8130 (3)0.5898 (9)0.61014 (19)0.0457 (12)
O100.7479 (2)0.5615 (6)0.62947 (13)0.0649 (10)
C110.7659 (3)0.2377 (9)0.54229 (18)0.0488 (13)
H11A0.74470.17880.57630.059*
H11B0.79820.10450.52960.059*
C120.6878 (3)0.3001 (9)0.49053 (18)0.0506 (13)
H12A0.70750.37400.45750.061*
H12B0.65020.41690.50410.061*
C130.6375 (3)0.0642 (9)0.46908 (18)0.0502 (13)
H13A0.6737−0.04160.45100.060*
H13B0.6271−0.02110.50410.060*
N140.5535 (2)0.1028 (7)0.42500 (15)0.0435 (10)
C150.5664 (3)0.1797 (9)0.36668 (18)0.0551 (14)
H15A0.60140.05730.35240.066*
H15B0.59850.33370.37170.066*
C160.4801 (3)0.2128 (9)0.31949 (19)0.0605 (14)
H16A0.44760.34710.33170.073*
H16B0.49170.25650.28090.073*
N170.4269 (2)−0.0093 (7)0.31190 (15)0.0432 (10)
C180.4153 (3)−0.0908 (9)0.37070 (18)0.0528 (13)
H18A0.3833−0.24510.36570.063*
H18B0.38110.03020.38620.063*
C190.5027 (3)−0.1247 (9)0.41534 (19)0.0555 (14)
H19A0.4935−0.18050.45380.067*
H19B0.5356−0.25070.40040.067*
C200.3524 (3)−0.0201 (9)0.26258 (19)0.0446 (12)
C210.3356 (3)0.1559 (10)0.2177 (2)0.0651 (16)
H21A0.37230.29190.22090.078*
C220.2645 (3)0.1331 (11)0.1677 (2)0.0708 (17)
H22A0.25450.25410.13780.085*
C230.2089 (3)−0.0630 (11)0.1614 (2)0.0643 (15)
H23A0.1614−0.07770.12780.077*
C240.2254 (3)−0.2380 (11)0.2063 (2)0.0656 (15)
H24A0.1878−0.37220.20310.079*
C250.2961 (3)−0.2202 (10)0.2562 (2)0.0559 (14)
H25A0.3061−0.34280.28570.067*
U11U22U33U12U13U23
N10.033 (2)0.057 (3)0.043 (2)−0.005 (2)0.0113 (18)0.003 (2)
C20.032 (3)0.069 (4)0.038 (3)0.001 (3)0.000 (2)0.000 (3)
O20.059 (2)0.079 (3)0.0492 (19)−0.012 (2)0.0193 (17)−0.019 (2)
N30.037 (2)0.065 (3)0.052 (2)−0.010 (2)0.013 (2)−0.008 (2)
C40.039 (3)0.049 (3)0.040 (3)0.002 (3)0.005 (2)0.001 (3)
C50.040 (3)0.063 (4)0.053 (3)0.001 (3)0.005 (2)0.012 (3)
C60.057 (3)0.056 (4)0.061 (3)−0.002 (3)0.002 (3)−0.002 (3)
C70.065 (3)0.056 (4)0.054 (3)0.006 (3)0.010 (3)−0.005 (3)
C80.047 (3)0.063 (4)0.050 (3)0.014 (3)0.011 (2)0.007 (3)
C90.039 (3)0.048 (3)0.034 (2)0.012 (3)0.003 (2)0.007 (2)
C100.042 (3)0.051 (3)0.042 (3)0.006 (3)0.007 (2)0.004 (3)
O100.054 (2)0.079 (3)0.073 (2)−0.009 (2)0.0345 (18)−0.008 (2)
C110.036 (3)0.061 (3)0.049 (3)−0.001 (3)0.010 (2)0.004 (3)
C120.044 (3)0.052 (3)0.048 (3)−0.005 (3)−0.002 (2)0.002 (3)
C130.048 (3)0.051 (3)0.048 (3)−0.001 (3)0.005 (2)−0.003 (3)
N140.044 (2)0.046 (3)0.039 (2)−0.006 (2)0.0074 (18)−0.005 (2)
C150.051 (3)0.064 (4)0.048 (3)−0.015 (3)0.008 (2)0.000 (3)
C160.059 (3)0.064 (4)0.055 (3)−0.016 (3)0.007 (3)0.006 (3)
N170.045 (2)0.048 (3)0.038 (2)−0.010 (2)0.0131 (18)0.000 (2)
C180.047 (3)0.062 (4)0.048 (3)−0.018 (3)0.008 (2)−0.001 (3)
C190.060 (3)0.060 (4)0.045 (3)−0.011 (3)0.012 (2)0.000 (3)
C200.044 (3)0.050 (3)0.039 (3)0.002 (3)0.008 (2)−0.010 (3)
C210.077 (4)0.067 (4)0.044 (3)−0.011 (3)0.000 (3)−0.002 (3)
C220.076 (4)0.076 (4)0.051 (3)0.001 (4)0.000 (3)0.008 (3)
C230.049 (3)0.087 (4)0.054 (3)0.000 (4)0.007 (3)−0.011 (3)
C240.053 (3)0.079 (4)0.064 (3)−0.022 (3)0.015 (3)−0.016 (4)
C250.049 (3)0.058 (4)0.056 (3)−0.005 (3)0.004 (3)−0.006 (3)
N1—C21.389 (5)C13—H13B0.9700
N1—C101.389 (5)N14—C151.453 (5)
N1—C111.470 (5)N14—C191.459 (5)
C2—O21.235 (5)C15—C161.518 (5)
C2—N31.353 (5)C15—H15A0.9700
N3—C41.381 (5)C15—H15B0.9700
N3—H30.95 (4)C16—N171.454 (5)
C4—C91.385 (5)C16—H16A0.9700
C4—C51.397 (6)C16—H16B0.9700
C5—C61.379 (6)N17—C201.407 (5)
C5—H5A0.9300N17—C181.464 (5)
C6—C71.384 (6)C18—C191.504 (5)
C6—H6A0.9300C18—H18A0.9700
C7—C81.377 (6)C18—H18B0.9700
C7—H7A0.9300C19—H19A0.9700
C8—C91.400 (6)C19—H19B0.9700
C8—H8A0.9300C20—C211.375 (6)
C9—C101.456 (6)C20—C251.388 (6)
C10—O101.223 (5)C21—C221.388 (6)
C11—C121.513 (5)C21—H21A0.9300
C11—H11A0.9700C22—C231.364 (6)
C11—H11B0.9700C22—H22A0.9300
C12—C131.522 (6)C23—C241.373 (6)
C12—H12A0.9700C23—H23A0.9300
C12—H12B0.9700C24—C251.381 (5)
C13—N141.462 (5)C24—H24A0.9300
C13—H13A0.9700C25—H25A0.9300
C2—N1—C10125.0 (4)C15—N14—C19107.6 (3)
C2—N1—C11116.7 (4)C15—N14—C13111.0 (3)
C10—N1—C11118.2 (4)C19—N14—C13110.5 (4)
O2—C2—N3122.3 (4)N14—C15—C16112.0 (4)
O2—C2—N1121.6 (5)N14—C15—H15A109.2
N3—C2—N1116.1 (5)C16—C15—H15A109.2
C2—N3—C4124.4 (4)N14—C15—H15B109.2
C2—N3—H3119 (3)C16—C15—H15B109.2
C4—N3—H3115 (3)H15A—C15—H15B107.9
N3—C4—C9118.8 (5)N17—C16—C15111.9 (4)
N3—C4—C5120.7 (5)N17—C16—H16A109.2
C9—C4—C5120.4 (5)C15—C16—H16A109.2
C6—C5—C4119.6 (5)N17—C16—H16B109.2
C6—C5—H5A120.2C15—C16—H16B109.2
C4—C5—H5A120.2H16A—C16—H16B107.9
C5—C6—C7120.4 (5)C20—N17—C16118.0 (4)
C5—C6—H6A119.8C20—N17—C18116.5 (3)
C7—C6—H6A119.8C16—N17—C18110.1 (3)
C8—C7—C6120.1 (5)N17—C18—C19110.6 (3)
C8—C7—H7A119.9N17—C18—H18A109.5
C6—C7—H7A119.9C19—C18—H18A109.5
C7—C8—C9120.3 (5)N17—C18—H18B109.5
C7—C8—H8A119.8C19—C18—H18B109.5
C9—C8—H8A119.8H18A—C18—H18B108.1
C4—C9—C8119.1 (5)N14—C19—C18111.9 (4)
C4—C9—C10120.1 (4)N14—C19—H19A109.2
C8—C9—C10120.6 (5)C18—C19—H19A109.2
O10—C10—N1120.5 (5)N14—C19—H19B109.2
O10—C10—C9124.1 (5)C18—C19—H19B109.2
N1—C10—C9115.4 (4)H19A—C19—H19B107.9
N1—C11—C12114.3 (4)C21—C20—C25117.9 (4)
N1—C11—H11A108.7C21—C20—N17122.0 (5)
C12—C11—H11A108.7C25—C20—N17119.9 (4)
N1—C11—H11B108.7C20—C21—C22120.8 (5)
C12—C11—H11B108.7C20—C21—H21A119.6
H11A—C11—H11B107.6C22—C21—H21A119.6
C11—C12—C13108.5 (4)C23—C22—C21121.4 (5)
C11—C12—H12A110.0C23—C22—H22A119.3
C13—C12—H12A110.0C21—C22—H22A119.3
C11—C12—H12B110.0C22—C23—C24117.8 (5)
C13—C12—H12B110.0C22—C23—H23A121.1
H12A—C12—H12B108.4C24—C23—H23A121.1
N14—C13—C12114.1 (4)C23—C24—C25121.8 (5)
N14—C13—H13A108.7C23—C24—H24A119.1
C12—C13—H13A108.7C25—C24—H24A119.1
N14—C13—H13B108.7C24—C25—C20120.2 (5)
C12—C13—H13B108.7C24—C25—H25A119.9
H13A—C13—H13B107.6C20—C25—H25A119.9
C10—N1—C2—O2178.3 (4)C10—N1—C11—C1292.2 (4)
C11—N1—C2—O22.5 (6)N1—C11—C12—C13173.4 (4)
C10—N1—C2—N3−1.7 (6)C11—C12—C13—N14171.7 (3)
C11—N1—C2—N3−177.5 (4)C12—C13—N14—C1571.1 (5)
O2—C2—N3—C4−176.9 (4)C12—C13—N14—C19−169.6 (4)
N1—C2—N3—C43.1 (6)C19—N14—C15—C1657.1 (5)
C2—N3—C4—C9−1.2 (6)C13—N14—C15—C16178.1 (4)
C2—N3—C4—C5179.0 (4)N14—C15—C16—N17−56.3 (5)
N3—C4—C5—C6179.7 (4)C15—C16—N17—C20−169.2 (4)
C9—C4—C5—C6−0.1 (6)C15—C16—N17—C1853.8 (5)
C4—C5—C6—C70.4 (7)C20—N17—C18—C19167.0 (4)
C5—C6—C7—C8−1.0 (7)C16—N17—C18—C19−55.2 (5)
C6—C7—C8—C91.3 (7)C15—N14—C19—C18−59.3 (5)
N3—C4—C9—C8−179.4 (4)C13—N14—C19—C18179.4 (3)
C5—C4—C9—C80.5 (6)N17—C18—C19—N1459.6 (5)
N3—C4—C9—C10−2.3 (6)C16—N17—C20—C218.9 (6)
C5—C4—C9—C10177.5 (4)C18—N17—C20—C21143.2 (4)
C7—C8—C9—C4−1.1 (6)C16—N17—C20—C25−175.1 (4)
C7—C8—C9—C10−178.1 (4)C18—N17—C20—C25−40.7 (6)
C2—N1—C10—O10176.8 (4)C25—C20—C21—C22−0.1 (7)
C11—N1—C10—O10−7.4 (6)N17—C20—C21—C22176.1 (4)
C2—N1—C10—C9−1.5 (6)C20—C21—C22—C230.3 (8)
C11—N1—C10—C9174.3 (3)C21—C22—C23—C240.1 (8)
C4—C9—C10—O10−174.7 (4)C22—C23—C24—C25−0.7 (8)
C8—C9—C10—O102.3 (7)C23—C24—C25—C200.9 (7)
C4—C9—C10—N13.5 (6)C21—C20—C25—C24−0.5 (7)
C8—C9—C10—N1−179.5 (4)N17—C20—C25—C24−176.7 (4)
C2—N1—C11—C12−91.7 (4)
D—H···AD—HH···AD···AD—H···A
N3—H3···O2i0.95 (4)1.85 (4)2.799 (5)171 (4)
C18—H18A···O10ii0.972.713.625 (6)157
C25—H25A···O10ii0.932.593.404 (6)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3⋯O2i 0.95 (4)1.85 (4)2.799 (5)171 (4)
C18—H18A⋯O10ii 0.972.713.625 (6)157
C25—H25A⋯O10ii 0.932.593.404 (6)147

Symmetry codes: (i) ; (ii) .

  5 in total

1.  Pharmacokinetics of pelanserin in healthy volunteers.

Authors:  F J Flores-Murrieta; J E Herrera; G Castañeda-Hernández; E Hong
Journal:  Proc West Pharmacol Soc       Date:  1992

2.  [Pharmacokinetics and antihypertensive effect of pelanserin in dogs ].

Authors:  F J Flores Murrieta; G Castañeda Hernández; E Hong
Journal:  Arch Inst Cardiol Mex       Date:  1990 Jul-Aug

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  The 5-HT2 receptor antagonist, pelanserin, inhibits alpha 1-adrenoceptor-mediated vasoconstriction in vitro.

Authors:  R Villalobos-Molina; M Ibarra; E Hong
Journal:  Eur J Pharmacol       Date:  1995-04-24       Impact factor: 4.432

5.  Quinazoline-2,4(1H,3H)-dione.

Authors:  Ge Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-06
  5 in total

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