| Literature DB >> 21201667 |
Ge Liu1.
Abstract
In the title compound, C(8)H(6)N(2)O(2), inter-molecular N-H⋯O hydrogen bonds involving the amine and carbonyl groups create centrosymmetric dimers between adjacent nearly coplanar mol-ecules. These dimers are further connected by weak N-H⋯O hydrogen bonds, forming a two-dimensional network. Mol-ecules are packed in the crystal structure with adjacent benzene and pyrimidine rings approximately coplanar; the centroid-centroid separation is 3.863 Å and the dihedral angle between the mean planes is 0.64°, indicating the presence of weak inter-molecular face-to-face π-π stacking inter-actions.Entities:
Year: 2008 PMID: 21201667 PMCID: PMC2960707 DOI: 10.1107/S1600536808024240
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H6N2O2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 5473 reflections |
| θ = 3.3–27.5º | |
| µ = 0.11 mm−1 | |
| β = 99.61 (3)º | Block, colorless |
| 0.20 × 0.18 × 0.15 mm | |
| Rigaku R-AXIS RAPID-S diffractometer | 869 reflections with |
| Radiation source: fine-focus sealed tube | |
| Monochromator: graphite | θmax = 25.0º |
| θmin = 3.3º | |
| ω scans | |
| Absorption correction: none | |
| 5683 measured reflections | |
| 1262 independent reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| | |
| (Δ/σ)max = 0.004 | |
| Δρmax = 0.12 e Å−3 | |
| 1262 reflections | Δρmin = −0.12 e Å−3 |
| 110 parameters | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.009 (3) |
| Secondary atom site location: difference Fourier map |
| C1 | 0.2762 (2) | 0.9421 (4) | 0.57398 (17) | 0.0395 (6) | |
| N1 | 0.11953 (17) | 1.0471 (4) | 0.67998 (14) | 0.0453 (6) | |
| H1A | 0.0866 | 1.0176 | 0.7357 | 0.054* | |
| O1 | −0.01889 (16) | 1.3655 (3) | 0.62957 (12) | 0.0546 (5) | |
| C2 | 0.3772 (2) | 0.7919 (5) | 0.5574 (2) | 0.0494 (7) | |
| H2A | 0.4148 | 0.8190 | 0.4977 | 0.059* | |
| N2 | 0.12516 (17) | 1.2702 (4) | 0.52514 (14) | 0.0442 (6) | |
| H2B | 0.0924 | 1.3842 | 0.4809 | 0.053* | |
| O2 | 0.26963 (17) | 1.2019 (3) | 0.41910 (13) | 0.0633 (6) | |
| C3 | 0.4210 (2) | 0.6050 (5) | 0.6289 (2) | 0.0560 (8) | |
| H3A | 0.4884 | 0.5060 | 0.6179 | 0.067* | |
| C4 | 0.3646 (2) | 0.5637 (5) | 0.7176 (2) | 0.0540 (7) | |
| H4A | 0.3943 | 0.4359 | 0.7655 | 0.065* | |
| C5 | 0.2655 (2) | 0.7091 (5) | 0.7357 (2) | 0.0502 (7) | |
| H5A | 0.2287 | 0.6809 | 0.7956 | 0.060* | |
| C6 | 0.2210 (2) | 0.8984 (4) | 0.66362 (17) | 0.0388 (6) | |
| C7 | 0.0702 (2) | 1.2336 (5) | 0.61374 (18) | 0.0419 (6) | |
| C8 | 0.2277 (2) | 1.1435 (5) | 0.49911 (18) | 0.0444 (6) |
| C1 | 0.0414 (14) | 0.0406 (14) | 0.0384 (13) | −0.0030 (12) | 0.0121 (11) | −0.0038 (12) |
| N1 | 0.0517 (13) | 0.0533 (13) | 0.0344 (11) | 0.0086 (11) | 0.0179 (10) | 0.0109 (10) |
| O1 | 0.0556 (11) | 0.0681 (13) | 0.0450 (10) | 0.0219 (10) | 0.0221 (8) | 0.0109 (9) |
| C2 | 0.0500 (16) | 0.0520 (17) | 0.0499 (16) | 0.0001 (14) | 0.0191 (13) | −0.0075 (14) |
| N2 | 0.0538 (13) | 0.0474 (13) | 0.0346 (11) | 0.0079 (10) | 0.0169 (10) | 0.0077 (10) |
| O2 | 0.0853 (14) | 0.0669 (13) | 0.0469 (10) | 0.0062 (11) | 0.0380 (10) | 0.0071 (10) |
| C3 | 0.0486 (16) | 0.0527 (17) | 0.0670 (19) | 0.0098 (14) | 0.0107 (15) | −0.0099 (16) |
| C4 | 0.0556 (17) | 0.0519 (17) | 0.0532 (16) | 0.0063 (14) | 0.0049 (14) | 0.0017 (14) |
| C5 | 0.0523 (16) | 0.0550 (17) | 0.0445 (15) | 0.0044 (14) | 0.0117 (12) | 0.0057 (13) |
| C6 | 0.0385 (14) | 0.0404 (14) | 0.0378 (13) | −0.0006 (12) | 0.0077 (11) | −0.0037 (12) |
| C7 | 0.0456 (15) | 0.0482 (15) | 0.0336 (13) | 0.0018 (13) | 0.0118 (12) | 0.0019 (12) |
| C8 | 0.0547 (17) | 0.0442 (15) | 0.0379 (14) | −0.0022 (13) | 0.0181 (12) | −0.0070 (12) |
| C1—C6 | 1.393 (3) | N2—C8 | 1.389 (3) |
| C1—C2 | 1.401 (3) | N2—H2B | 0.8600 |
| C1—C8 | 1.465 (3) | O2—C8 | 1.221 (3) |
| N1—C7 | 1.348 (3) | C3—C4 | 1.388 (3) |
| N1—C6 | 1.399 (3) | C3—H3A | 0.9300 |
| N1—H1A | 0.8600 | C4—C5 | 1.375 (3) |
| O1—C7 | 1.238 (3) | C4—H4A | 0.9300 |
| C2—C3 | 1.372 (3) | C5—C6 | 1.387 (3) |
| C2—H2A | 0.9300 | C5—H5A | 0.9300 |
| N2—C7 | 1.373 (3) | ||
| C6—C1—C2 | 119.1 (2) | C5—C4—C3 | 120.9 (3) |
| C6—C1—C8 | 119.6 (2) | C5—C4—H4A | 119.5 |
| C2—C1—C8 | 121.3 (2) | C3—C4—H4A | 119.5 |
| C7—N1—C6 | 124.0 (2) | C4—C5—C6 | 119.3 (2) |
| C7—N1—H1A | 118.0 | C4—C5—H5A | 120.3 |
| C6—N1—H1A | 118.0 | C6—C5—H5A | 120.3 |
| C3—C2—C1 | 120.2 (2) | C5—C6—C1 | 120.5 (2) |
| C3—C2—H2A | 119.9 | C5—C6—N1 | 120.3 (2) |
| C1—C2—H2A | 119.9 | C1—C6—N1 | 119.2 (2) |
| C7—N2—C8 | 127.2 (2) | O1—C7—N1 | 123.4 (2) |
| C7—N2—H2B | 116.4 | O1—C7—N2 | 121.0 (2) |
| C8—N2—H2B | 116.4 | N1—C7—N2 | 115.6 (2) |
| C2—C3—C4 | 119.9 (2) | O2—C8—N2 | 120.2 (2) |
| C2—C3—H3A | 120.0 | O2—C8—C1 | 125.4 (2) |
| C4—C3—H3A | 120.0 | N2—C8—C1 | 114.3 (2) |
| C6—C1—C2—C3 | −0.1 (4) | C7—N1—C6—C1 | 0.0 (3) |
| C8—C1—C2—C3 | 179.8 (2) | C6—N1—C7—O1 | −179.3 (2) |
| C1—C2—C3—C4 | 0.3 (4) | C6—N1—C7—N2 | 0.9 (3) |
| C2—C3—C4—C5 | −0.5 (4) | C8—N2—C7—O1 | 177.6 (2) |
| C3—C4—C5—C6 | 0.4 (4) | C8—N2—C7—N1 | −2.7 (3) |
| C4—C5—C6—C1 | −0.3 (4) | C7—N2—C8—O2 | −177.4 (2) |
| C4—C5—C6—N1 | 179.4 (2) | C7—N2—C8—C1 | 3.1 (3) |
| C2—C1—C6—C5 | 0.1 (3) | C6—C1—C8—O2 | 178.7 (2) |
| C8—C1—C6—C5 | −179.9 (2) | C2—C1—C8—O2 | −1.3 (4) |
| C2—C1—C6—N1 | −179.6 (2) | C6—C1—C8—N2 | −1.8 (3) |
| C8—C1—C6—N1 | 0.4 (3) | C2—C1—C8—N2 | 178.2 (2) |
| C7—N1—C6—C5 | −179.7 (2) |
| H··· | ||||
| N2—H2B···O1i | 0.86 | 2.00 | 2.854 | 176 |
| N1—H1A···O1ii | 0.86 | 2.13 | 2.976 | 168 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.86 | 2.00 | 2.854 | 176 |
| N1—H1 | 0.86 | 2.13 | 2.976 | 168 |
Symmetry codes: (i) ; (ii) .