Literature DB >> 25249918

4-(2-Fluoro-phen-yl)-2-meth-oxy-5,6,7,8,9,10-hexa-hydro-cyclo-octa-[b]pyridine-3-carbo-nitrile.

R Vishnupriya1, J Suresh1, S Maharani2, R Ranjith Kumar2, P L Nilantha Lakshman3.   

Abstract

In the title compound, C19H19FN2O, the cyclo-octene ring adopts a twisted boat-chair conformation. The dihedral angle between the plane of the fluorophenyl substituent and that of the pyridine ring is 76.39 (8)°. The F and ortho-H atoms of the fluoro-benzene ring are disordered, with occupancy factors of 0.226 (5) and 0.774 (5). In the crystal, no significant inter-actions are observed between the mol-ecules beyond van der Waals contacts.

Entities:  

Keywords:  carbo­nitrile compounds; crystal structure; cyclo­octa­[b]pyridine

Year:  2014        PMID: 25249918      PMCID: PMC4158480          DOI: 10.1107/S1600536814016365

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activities of substituted pyridine derivatives, see: Bossert & Vater (1989 ▶); Bossert et al. (1981 ▶); Wang et al. (1989 ▶); Alajarin et al. (1995 ▶). For similar structures, see: Ramesh et al. (2009a ▶,b ▶).

Experimental

Crystal data

C19H19FN2O M = 310.36 Monoclinic, a = 9.5219 (3) Å b = 13.8808 (4) Å c = 12.1140 (3) Å β = 97.829 (1)° V = 1586.20 (8) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.28 × 0.25 × 0.23 mm

Data collection

Bruker Kappa APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.977, T max = 0.981 37690 measured reflections 3475 independent reflections 2812 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.155 S = 1.08 3475 reflections 220 parameters 10 restraints H-atom parameters constrained Δρmax = 0.65 e Å−3 Δρmin = −0.61 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814016365/zq2223sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814016365/zq2223Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814016365/zq2223Isup3.cml CCDC reference: 1013943 Additional supporting information: crystallographic information; 3D view; checkCIF report
C19H19FN2OF(000) = 656
Mr = 310.36Dx = 1.300 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2000 reflections
a = 9.5219 (3) Åθ = 2–27°
b = 13.8808 (4) ŵ = 0.09 mm1
c = 12.1140 (3) ÅT = 293 K
β = 97.829 (1)°Block, colourless
V = 1586.20 (8) Å30.28 × 0.25 × 0.23 mm
Z = 4
Bruker Kappa APEXII diffractometer3475 independent reflections
Radiation source: fine-focus sealed tube2812 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
Detector resolution: 0 pixels mm-1θmax = 27.0°, θmin = 2.2°
ω and φ scansh = −12→12
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −17→17
Tmin = 0.977, Tmax = 0.981l = −15→15
37690 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.053H-atom parameters constrained
wR(F2) = 0.155w = 1/[σ2(Fo2) + (0.0648P)2 + 0.7644P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
3475 reflectionsΔρmax = 0.65 e Å3
220 parametersΔρmin = −0.61 e Å3
10 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.010 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.48826 (19)0.14942 (13)0.47836 (14)0.0386 (4)
C20.5667 (2)0.18410 (14)0.38693 (15)0.0454 (4)
H2A0.56350.13440.33030.054*
H2B0.66530.19420.41700.054*
C30.5073 (2)0.27694 (16)0.33279 (17)0.0537 (5)
H3A0.56950.29830.28060.064*
H3B0.41560.26310.29030.064*
C40.4896 (2)0.35887 (16)0.41229 (19)0.0575 (5)
H4A0.41630.34130.45690.069*
H4B0.45660.41520.36890.069*
C50.6229 (3)0.38643 (15)0.49078 (18)0.0566 (5)
H5A0.70470.36360.45880.068*
H5B0.62860.45620.49430.068*
C60.6324 (3)0.34781 (16)0.60938 (18)0.0593 (6)
H6A0.54580.36510.63840.071*
H6B0.70980.38070.65460.071*
C70.6549 (2)0.23933 (16)0.62511 (16)0.0496 (5)
H7A0.73080.22000.58390.059*
H7B0.68710.22740.70340.059*
C80.52873 (18)0.17526 (13)0.58972 (14)0.0384 (4)
C90.45081 (18)0.13641 (12)0.66895 (14)0.0370 (4)
C100.33770 (18)0.07500 (12)0.63392 (14)0.0380 (4)
C110.30274 (19)0.05759 (13)0.51926 (14)0.0396 (4)
C120.2597 (2)0.02745 (14)0.71119 (15)0.0438 (4)
C130.1466 (3)−0.01094 (17)0.37142 (17)0.0565 (5)
H13A0.0670−0.05390.35960.085*
H13B0.2237−0.03730.33760.085*
H13C0.12030.05050.33850.085*
C140.48547 (16)0.15856 (14)0.79050 (14)0.0421 (4)
C150.55536 (16)0.09561 (12)0.86460 (16)0.0557 (5)
H150.57830.03560.83800.067*0.226 (5)
F1B0.3841 (3)0.3087 (4)0.7588 (5)0.115 (4)0.226 (5)
C160.5944 (2)0.1143 (2)0.97544 (19)0.0741 (8)
H160.64190.06861.02270.089*
C170.5606 (3)0.2033 (3)1.0142 (2)0.0807 (9)
H170.58610.21851.08910.097*
C180.4901 (3)0.2696 (2)0.9439 (2)0.0737 (8)
H180.46720.32960.97080.088*
C190.4532 (2)0.24716 (17)0.83331 (18)0.0571 (5)
H190.40540.29260.78590.069*0.774 (5)
F1A0.5857 (2)0.00848 (12)0.82521 (14)0.0769 (8)0.774 (5)
N10.37525 (17)0.09332 (11)0.44417 (12)0.0417 (4)
N20.1995 (2)−0.01308 (16)0.77174 (16)0.0628 (5)
O10.18988 (15)0.00092 (11)0.48868 (11)0.0518 (4)
U11U22U33U12U13U23
C10.0420 (9)0.0375 (9)0.0364 (9)0.0037 (7)0.0055 (7)0.0002 (7)
C20.0526 (11)0.0467 (10)0.0383 (9)−0.0006 (8)0.0116 (8)−0.0020 (8)
C30.0626 (12)0.0571 (12)0.0401 (10)−0.0043 (10)0.0021 (9)0.0066 (9)
C40.0647 (13)0.0491 (11)0.0588 (13)0.0085 (10)0.0090 (10)0.0078 (10)
C50.0719 (14)0.0432 (10)0.0570 (12)−0.0088 (10)0.0170 (10)−0.0035 (9)
C60.0699 (14)0.0607 (13)0.0486 (11)−0.0243 (11)0.0127 (10)−0.0139 (10)
C70.0431 (10)0.0664 (13)0.0378 (9)−0.0106 (9)0.0002 (7)0.0045 (9)
C80.0380 (9)0.0400 (9)0.0366 (8)0.0014 (7)0.0025 (7)0.0022 (7)
C90.0380 (9)0.0381 (8)0.0340 (8)0.0039 (7)0.0019 (6)0.0003 (7)
C100.0405 (9)0.0383 (9)0.0349 (8)0.0019 (7)0.0043 (7)0.0005 (7)
C110.0427 (9)0.0374 (9)0.0374 (9)−0.0001 (7)0.0010 (7)−0.0009 (7)
C120.0447 (10)0.0489 (10)0.0377 (9)−0.0029 (8)0.0058 (7)−0.0039 (8)
C130.0626 (13)0.0613 (13)0.0414 (10)−0.0116 (10)−0.0081 (9)−0.0042 (9)
C140.0396 (9)0.0516 (10)0.0350 (9)−0.0050 (8)0.0046 (7)−0.0034 (7)
C150.0576 (12)0.0679 (14)0.0404 (10)0.0027 (10)0.0024 (9)0.0012 (9)
F1B0.133 (8)0.091 (6)0.122 (7)0.054 (5)0.026 (6)−0.025 (5)
C160.0668 (15)0.113 (2)0.0402 (11)−0.0049 (15)−0.0012 (10)0.0109 (13)
C170.0796 (17)0.123 (3)0.0404 (12)−0.0294 (17)0.0112 (11)−0.0250 (15)
C180.0838 (17)0.0808 (17)0.0614 (15)−0.0219 (14)0.0281 (13)−0.0317 (14)
C190.0610 (13)0.0617 (13)0.0516 (11)−0.0084 (10)0.0183 (10)−0.0141 (10)
F1A0.1046 (16)0.0693 (12)0.0548 (11)0.0386 (10)0.0034 (9)0.0068 (8)
N10.0484 (9)0.0409 (8)0.0350 (7)−0.0002 (6)0.0034 (6)−0.0010 (6)
N20.0648 (12)0.0756 (13)0.0504 (10)−0.0147 (10)0.0164 (9)0.0009 (9)
O10.0554 (8)0.0587 (8)0.0388 (7)−0.0169 (6)−0.0025 (6)−0.0006 (6)
C1—N11.347 (2)C9—C141.496 (2)
C1—C81.398 (2)C10—C111.404 (2)
C1—C21.497 (2)C10—C121.433 (3)
C2—C31.520 (3)C11—N11.312 (2)
C2—H2A0.9700C11—O11.342 (2)
C2—H2B0.9700C12—N21.139 (3)
C3—C41.514 (3)C13—O11.434 (2)
C3—H3A0.9700C13—H13A0.9600
C3—H3B0.9700C13—H13B0.9600
C4—C51.527 (3)C13—H13C0.9600
C4—H4A0.9700C14—C151.360 (3)
C4—H4B0.9700C14—C191.385 (3)
C5—C61.524 (3)C15—F1A1.3459 (10)
C5—H5A0.9700C15—C161.368 (3)
C5—H5B0.9700C15—H150.9300
C6—C71.529 (3)F1B—C191.3477 (10)
C6—H6A0.9700C16—C171.375 (4)
C6—H6B0.9700C16—H160.9300
C7—C81.509 (3)C17—C181.367 (4)
C7—H7A0.9700C17—H170.9300
C7—H7B0.9700C18—C191.374 (3)
C8—C91.399 (2)C18—H180.9300
C9—C101.394 (2)C19—H190.9300
N1—C1—C8123.26 (16)C9—C8—C7120.56 (15)
N1—C1—C2114.61 (15)C10—C9—C8119.14 (15)
C8—C1—C2122.11 (16)C10—C9—C14118.89 (15)
C1—C2—C3113.46 (16)C8—C9—C14121.97 (15)
C1—C2—H2A108.9C9—C10—C11118.40 (16)
C3—C2—H2A108.9C9—C10—C12122.05 (16)
C1—C2—H2B108.9C11—C10—C12119.52 (16)
C3—C2—H2B108.9N1—C11—O1120.49 (16)
H2A—C2—H2B107.7N1—C11—C10122.98 (16)
C4—C3—C2115.43 (16)O1—C11—C10116.53 (16)
C4—C3—H3A108.4N2—C12—C10177.8 (2)
C2—C3—H3A108.4O1—C13—H13A109.5
C4—C3—H3B108.4O1—C13—H13B109.5
C2—C3—H3B108.4H13A—C13—H13B109.5
H3A—C3—H3B107.5O1—C13—H13C109.5
C3—C4—C5115.42 (19)H13A—C13—H13C109.5
C3—C4—H4A108.4H13B—C13—H13C109.5
C5—C4—H4A108.4C15—C14—C19115.90 (18)
C3—C4—H4B108.4C15—C14—C9122.68 (17)
C5—C4—H4B108.4C19—C14—C9121.36 (18)
H4A—C4—H4B107.5F1A—C15—C14116.92 (17)
C6—C5—C4115.89 (18)F1A—C15—C16118.4 (2)
C6—C5—H5A108.3C14—C15—C16124.7 (2)
C4—C5—H5A108.3C14—C15—H15117.7
C6—C5—H5B108.3C16—C15—H15117.7
C4—C5—H5B108.3C15—C16—C17117.5 (3)
H5A—C5—H5B107.4C15—C16—H16121.3
C5—C6—C7116.94 (17)C17—C16—H16121.3
C5—C6—H6A108.1C18—C17—C16120.7 (2)
C7—C6—H6A108.1C18—C17—H17119.7
C5—C6—H6B108.1C16—C17—H17119.7
C7—C6—H6B108.1C17—C18—C19119.5 (3)
H6A—C6—H6B107.3C17—C18—H18120.2
C8—C7—C6116.88 (17)C19—C18—H18120.2
C8—C7—H7A108.1F1B—C19—C18123.1 (4)
C6—C7—H7A108.1F1B—C19—C14115.2 (4)
C8—C7—H7B108.1C18—C19—C14121.8 (2)
C6—C7—H7B108.1C18—C19—H19119.1
H7A—C7—H7B107.3C14—C19—H19119.1
C1—C8—C9117.45 (16)C11—N1—C1118.64 (15)
C1—C8—C7121.95 (16)C11—O1—C13116.85 (15)
N1—C1—C2—C387.0 (2)C10—C9—C14—C1577.10 (18)
C8—C1—C2—C3−91.8 (2)C8—C9—C14—C15−102.71 (18)
C1—C2—C3—C452.0 (2)C10—C9—C14—C19−105.84 (18)
C2—C3—C4—C554.9 (3)C8—C9—C14—C1974.3 (2)
C3—C4—C5—C6−100.7 (2)C19—C14—C15—F1A178.92 (13)
C4—C5—C6—C769.8 (3)C9—C14—C15—F1A−3.88 (17)
C5—C6—C7—C8−74.8 (3)C19—C14—C15—C16−0.02 (14)
N1—C1—C8—C93.2 (3)C9—C14—C15—C16177.18 (17)
C2—C1—C8—C9−178.04 (16)F1A—C15—C16—C17−179.13 (17)
N1—C1—C8—C7−179.21 (17)C14—C15—C16—C17−0.2 (2)
C2—C1—C8—C7−0.4 (3)C15—C16—C17—C180.4 (3)
C6—C7—C8—C180.7 (2)C16—C17—C18—C19−0.3 (3)
C6—C7—C8—C9−101.8 (2)C17—C18—C19—F1B−179.75 (17)
C1—C8—C9—C10−0.3 (2)C17—C18—C19—C140.1 (3)
C7—C8—C9—C10−177.92 (17)C15—C14—C19—F1B179.93 (8)
C1—C8—C9—C14179.53 (16)C9—C14—C19—F1B2.7 (2)
C7—C8—C9—C141.9 (3)C15—C14—C19—C180.08 (18)
C8—C9—C10—C11−2.5 (3)C9—C14—C19—C18−177.16 (17)
C14—C9—C10—C11177.63 (16)O1—C11—N1—C1−179.64 (16)
C8—C9—C10—C12175.57 (17)C10—C11—N1—C1−0.1 (3)
C14—C9—C10—C12−4.2 (3)C8—C1—N1—C11−3.0 (3)
C9—C10—C11—N12.9 (3)C2—C1—N1—C11178.14 (16)
C12—C10—C11—N1−175.29 (17)N1—C11—O1—C13−5.3 (3)
C9—C10—C11—O1−177.58 (16)C10—C11—O1—C13175.14 (17)
C12—C10—C11—O14.2 (3)
  7 in total

Review 1.  1,4-Dihydropyridines--a basis for developing new drugs.

Authors:  F Bossert; W Vater
Journal:  Med Res Rev       Date:  1989 Jul-Sep       Impact factor: 12.944

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Structure of the calcium channel antagonist, nimodipine.

Authors:  S D Wang; L G Herbette; D G Rhodes
Journal:  Acta Crystallogr C       Date:  1989-11-15       Impact factor: 1.172

4.  4-(2,4-Dichloro-phen-yl)-6-(1H-indol-3-yl)-2,2'-bipyridine-5-carbonitrile.

Authors:  P Ramesh; S S Sundaresan; P Thirumurugan; Paramasivan T Perumal; M N Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-08

5.  Synthesis, structure, and pharmacological evaluation of the stereoisomers of furnidipine.

Authors:  R Alajarin; J J Vaquero; J Alvarez-Builla; M Pastor; C Sunkel; M Fau de Casa-Juana; J Priego; P R Statkow; J Sanz-Aparicio; I Fonseca
Journal:  J Med Chem       Date:  1995-07-21       Impact factor: 7.446

6.  4-(4-Bromo-phen-yl)-6-(1H-indol-3-yl)-2,2'-bipyridine-5-carbonitrile.

Authors:  P Ramesh; A Subbiahpandi; P Thirumurugan; Paramasivan T Perumal; M N Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-04

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total
  3 in total

1.  Crystal structure of 1-benzyl-4-(4-chloro-phen-yl)-2-imino-1,2,5,6,7,8,9,10-octa-hydro-cyclo-octa-[b]pyridine-3-carbo-nitrile.

Authors:  R A Nagalakshmi; J Suresh; S Maharani; R Ranjith Kumar; P L Nilantha Lakshman
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-09-06

2.  Crystal structure of 1-benzyl-4-(2,4-di-chloro-phenyl)-2-imino-1,2,5,6,7,8,9,10-octa-hydro-cyclo-octa-[b]pyridine-3-carbo-nitrile.

Authors:  R A Nagalakshmi; J Suresh; S Maharani; R Ranjith Kumar; P L Nilantha Lakshman
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-10-31

3.  Isotypic crystal structures of 1-benzyl-4-(4-bromo-phen-yl)-2-imino-1,2,5,6,7,8,9,10-octa-hydro-cyclo-octa-[b]pyridine-3-carbo-nitrile and 1-benzyl-4-(4-fluoro-phen-yl)-2-imino-1,2,5,6,7,8,9,10-octa-hydro-cyclo-octa-[b]pyridine-3-carbo-nitrile.

Authors:  R A Nagalakshmi; J Suresh; S Maharani; R Ranjith Kumar; P L Nilantha Lakshman
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-10-18
  3 in total

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