Literature DB >> 25249699

Functional Genomics and a New Era in Radiation Biology and Oncology.

Sally A Amundson1.   

Abstract

Ionizing radiation is a ubiquitous stress to which all life is continuously exposed, and thus complex mechanisms have evolved to regulate cellular responses to radiation, including cell cycle arrest, DNA repair, and programmed cell death. Changes in gene expression shape part of the response to radiation, and have historically provided insight into the underlying mechanisms of that response. However, the advent of microarrays, which can measure expression of all the genes in a cell simultaneously, has transformed the study of gene expression, and is beginning to have an impact on both basic mechanistic and clinical studies. This article provides an overview of concepts in gene expression and microarray technology, and highlights their impacts on the study of radiation biology.

Entities:  

Keywords:  functional genomics; ionizing radiation; microarray; oncology; p53

Year:  2008        PMID: 25249699      PMCID: PMC4170026          DOI: 10.1641/B580606

Source DB:  PubMed          Journal:  Bioscience        ISSN: 0006-3568            Impact factor:   8.589


  61 in total

1.  Gene expression changes in mouse brain after exposure to low-dose ionizing radiation.

Authors:  E Yin; D O Nelson; M A Coleman; L E Peterson; A J Wyrobek
Journal:  Int J Radiat Biol       Date:  2003-10       Impact factor: 2.694

2.  Outcome signature genes in breast cancer: is there a unique set?

Authors:  Liat Ein-Dor; Itai Kela; Gad Getz; David Givol; Eytan Domany
Journal:  Bioinformatics       Date:  2004-08-12       Impact factor: 6.937

Review 3.  Bystander effect: biological endpoints and microarray analysis.

Authors:  M Ahmad Chaudhry
Journal:  Mutat Res       Date:  2006-01-18       Impact factor: 2.433

4.  Microarray analysis of radiation response genes in primary human fibroblasts.

Authors:  Enikö Kis; Tünde Szatmári; Márton Keszei; Róbert Farkas; Olga Esik; Katalin Lumniczky; András Falus; Géza Sáfrány
Journal:  Int J Radiat Oncol Biol Phys       Date:  2006-10-25       Impact factor: 7.038

5.  Effectiveness of gene expression profiling for response prediction of rectal adenocarcinomas to preoperative chemoradiotherapy.

Authors:  B Michael Ghadimi; Marian Grade; Michael J Difilippantonio; Sudhir Varma; Richard Simon; Cristina Montagna; Laszlo Füzesi; Claus Langer; Heinz Becker; Torsten Liersch; Thomas Ried
Journal:  J Clin Oncol       Date:  2005-03-20       Impact factor: 44.544

6.  Quantitative monitoring of gene expression patterns with a complementary DNA microarray.

Authors:  M Schena; D Shalon; R W Davis; P O Brown
Journal:  Science       Date:  1995-10-20       Impact factor: 47.728

7.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

8.  Dose and dose-rate effects of low-dose ionizing radiation on activation of Trp53 in immortalized murine cells.

Authors:  Takashi Sugihara; Junji Magae; Renu Wadhwa; Sunil C Kaul; Yasushi Kawakami; Tsuneya Matsumoto; Kimio Tanaka
Journal:  Radiat Res       Date:  2004-09       Impact factor: 2.841

9.  Cluster analysis and display of genome-wide expression patterns.

Authors:  M B Eisen; P T Spellman; P O Brown; D Botstein
Journal:  Proc Natl Acad Sci U S A       Date:  1998-12-08       Impact factor: 11.205

10.  Gene expression signatures that predict radiation exposure in mice and humans.

Authors:  Holly K Dressman; Garrett G Muramoto; Nelson J Chao; Sarah Meadows; Dawn Marshall; Geoffrey S Ginsburg; Joseph R Nevins; John P Chute
Journal:  PLoS Med       Date:  2007-04       Impact factor: 11.069

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  8 in total

1.  Brain Damage and Patterns of Neurovascular Disorder after Ionizing Irradiation. Complications in Radiotherapy and Radiation Combined Injury.

Authors:  Nikolai V Gorbunov; Juliann G Kiang
Journal:  Radiat Res       Date:  2021-07-01       Impact factor: 2.841

Review 2.  The melatonin immunomodulatory actions in radiotherapy.

Authors:  M Najafi; A Shirazi; E Motevaseli; Gh Geraily; F Norouzi; M Heidari; S Rezapoor
Journal:  Biophys Rev       Date:  2017-03-27

3.  Effects of ionizing radiation on the immune system with special emphasis on the interaction of dendritic and T cells.

Authors:  Katrin Manda; Annegret Glasow; Daniel Paape; Guido Hildebrandt
Journal:  Front Oncol       Date:  2012-08-24       Impact factor: 6.244

4.  The transcriptomic revolution and radiation biology.

Authors:  Sally A Amundson
Journal:  Int J Radiat Biol       Date:  2021-10-11       Impact factor: 3.352

5.  X-ray radiation and the risk of multiple sclerosis: Do the site and dose of exposure matter?

Authors:  Mohammad Reza Motamed; Seyed-Mohammad Fereshtehnejad; Maryam Abbasi; Mastaneh Sanei; Mina Abbaslou; Somayeh Meysami
Journal:  Med J Islam Repub Iran       Date:  2014-12-09

6.  Transcriptome Alterations In X-Irradiated Human Gingiva Fibroblasts.

Authors:  Robert Weissmann; Tim Kacprowski; Michel Peper; Jennifer Esche; Lars R Jensen; Laura van Diepen; Matthias Port; Andreas W Kuss; Harry Scherthan
Journal:  Health Phys       Date:  2016-08       Impact factor: 1.316

7.  Assessment of Radiation Induced Therapeutic Effect and Cytotoxicity in Cancer Patients Based on Transcriptomic Profiling.

Authors:  Sajjad Karim; Zeenat Mirza; Adeel G Chaudhary; Adel M Abuzenadah; Mamdooh Gari; Mohammed H Al-Qahtani
Journal:  Int J Mol Sci       Date:  2016-02-19       Impact factor: 5.923

Review 8.  Role of Ionizing Radiation in Neurodegenerative Diseases.

Authors:  Neel K Sharma; Rupali Sharma; Deepali Mathur; Shashwat Sharad; Gillipsie Minhas; Kulsajan Bhatia; Akshay Anand; Sanchita P Ghosh
Journal:  Front Aging Neurosci       Date:  2018-05-14       Impact factor: 5.750

  8 in total

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