Mika Uematsu1, Dale L Boger. 1. Department of Chemistry and The Skaggs Institute for Chemical Biology, The Scripps Research Institute , 10550 N. Torrey Pines Road, La Jolla, California 92037, United States.
Abstract
A short, asymmetric synthesis of a cyclic N-acyl O-amino phenol duocarmycin prodrug subject to reductive activation based on the simplified 1,2,9,9a-tetrahydrocyclopropa[c]benz[e]indol-4-one (CBI) DNA alkylation subunit is described. A key element of the approach entailed treatment of iodo-epoxide 7, prepared by N-alkylation of 6 with (S)-glycidal 3-nosylate, with EtMgBr at room temperature to directly provide the optically pure alcohol 8 in 78% yield (99% ee) derived from an effective metal-halogen exchange and subsequent regioselective intramolecular 6-endo-tet cyclization. Following O-debenzylation, introduction of a protected N-methylhydroxamic acid, direct trannannular spirocyclization, and subsequent stereoelectronically controlled acid-catalyzed cleavage of the resulting cyclopropane (HCl), further improvements in a unique intramolecular cyclization with N-O bond formation originally introduced for formation of the reductively labile prodrug functionality are detailed.
A short, asymmetric synthesis of a cyclic N-acyl O-amino phenol duocarmycin prodrug subject to reductive activation based on the simplified n class="Chemical">1,2,9,9a-tetrahydrocyclopropa[c]benz[e]indol-4-one (CBI) DNA alkylation subunit is described. A key element of the approach entailed treatment of iodo-epoxide 7, prepared by N-alkylation of 6 with (S)-glycidal 3-nosylate, with EtMgBr at room temperature to directly provide the optically pure alcohol 8 in 78% yield (99% ee) derived from an effective metal-halogen exchange and subsequent regioselective intramolecular6-endo-tet cyclization. Following O-debenzylation, introduction of a protected N-methylhydroxamic acid, direct trannannular spirocyclization, and subsequent stereoelectronically controlled acid-catalyzed cleavage of the resulting cyclopropane (HCl), further improvements in a unique intramolecular cyclization with N-O bond formation originally introduced for formation of the reductively labile prodrug functionality are detailed.
Duocarmycin
SA (1)[1] and
n class="Chemical">CC-1065 (2)[2] are the two most
widely recognized members of a class of exceptionally potent naturally
occurring antitumorcompounds that also include duocarmycin A[3] and yatakemycin[4] (Figure 1). Each of these natural products has been shown
to derive its antitumor properties from its ability to alkylate DNA
in a sequence-selective manner,[5] undergoing
a stereoelectronically controlled adenine N3 alkylation within the
minor groove at defined locations within 4–5 base pair A–T
rich sites.[6] Extensive studies conducted
with the natural products, their synthetic unnatural enantiomers,[7] and a systematic series of key analogues have
defined a range of fundamental features that control their DNA alkylation
selectivity, efficiency, and catalysis,[8] providing a detailed understanding of the relationships between
structure, reactivity, and biological activity.
Figure 1
Structure of (+)-duocarmycin
SA, (+)-CC-1065, CBI, the cyclic N–O
prodrug of the CBI alkylation subunit, and prodrug 3.
Structure of (+)-duocarmycin
SA, n class="Chemical">(+)-CC-1065, CBI, the cyclic N–O
prodrug of the CBI alkylation subunit, and prodrug 3.
Recently, we reported the synthesis
and examination of both acyclic[9] and cyclic[10]N-acyl O-amino
phenol derivatives as members
of a unique class of reductively cleaved prodrugs of the n class="Chemical">duocarmycin
family of natural products.[11] These prodrugs
were explored with analogues incorporating the synthetically more
accessible 1,2,9,9a-tetrahydrocyclopropa[c]benz[e]indol-4-one (CBI) alkylation subunit[12,13] (Figure 1) and with the intention of attenuating
the extraordinary potency of the compounds. The expectation was that
they may be chemically tuned for cleavage selectively within hypoxic
tumor environments that have intrinsically higher intracellularconcentrations
of reducing nucleophiles. The most recent of these, a class of cyclic N-acyl O-amino phenol prodrugs,[10] were designed to liberate the free drug without
the release of an extraneous group. In vivo evaluation of the most
stable of these latter prodrugs, 3, showed that it exhibited
extraordinary antitumor efficacy in a simple tumor model (T/C > 1500, L1210; 6/10 one year survivors) substantially
exceeding that of the free drug, that its therapeutic window of activity
was much larger than that of the free drug, and yet that it displayed
a potency in vivo that approached the free drug.[10] These studies indicate that prodrug 3 may
benefit from either its controlled slow release of the free drug or
its preferential intracellular reductive cleavage.
In a continuation
of these studies and prompted by the need for
improved access to the materials, herein we report an asymmetric synthesis
of 3, avoiding the late-stage chiral phase resolution
of our initial synthesis and improving key elements of the approach
including a unique cyclization with N–O bond formation for
introduction of the reductively labile prodrug functionality.
Results
and Discussion
Palladium(0)-catalyzed carbonylation of 4,[14] in DMF–MeOH (2:1, 0.13
M, 0.1 equiv of
Pd(OAc)2, 0.2 equiv of xantphos, 1 equiv of K2CO3, CO atm, 100 °C, 17 h), provided methyl ester 5 in good conversion (60–65%) (Scheme 1). Regioselective iodination of 5 (2 equiv of N-iodosuccinimide (NIS), cat. HOAc, toluene, 25 °C,
17 h, 82%) followed by N-alkylation of 6 with (S)-glycidal 3-nosylate (99% ee) with clean SN2 displacement of the nosylate (1.15 equiv, 1.5 equiv of NaH, DMF,
0–25 °C, 5 h, 91%) set the stage for a key cyclization.
Treatment of iodo-epoxide 7 with EtMgBr at room temperature
directly provided the optically pure alcohol 8 in 78%
yield derived from selective metal–halogen exchange and subsequent
intramolecular6-endo-tet cyclization.
Analogous to observations made in an asymmetric synthesis of CBI itself,[13c] formation of the aryl Grignard reagent by metal–halogen
exchange (2.0 equiv of EtMgBr, 23 °C) is followed by the rapid
intramolecularepoxide ring opening to give near exclusively 8, the result of intramolecular6-endo versus
5-exo addition to the epoxide with only detection
of trace amounts of the isomeric product (>13:1, <5%). A similar
but technically more demanding protocol, entailing metal–halogen
exchange (i-PrMgCl, THF, −40 °C, 20 min)
followed by transmetalation with CuI–PBu3 (−78
°C, 1 h),[15] also provided 8 (−40 °C, 30 min, 68%) in comparable conversions. O-Debenzylation
of 8, accomplished by transfer hydrogenolysis (cat. 10%
Pd/C, 10 equiv of HCO2NH4, THF–MeOH,
25 °C, 1 h, 99%), followed by methyl ester hydrolysis (5 equiv
of LiOH, THF–MeOH–H2O 3:3:1, 70 °C,
4 h, quant.), provided carboxylic acid 10. Coupling of 10 (1.5 equiv of (1-[bis(dimethylamino)methylene]-1H-1,2,3-triazolo[4,5-b]pyridinium 3-oxide
hexafluorophosphate (HATU), 1.5 equiv of i-Pr2NEt, 25 °C, 18 h, 90%) with N-methylhydroxylamine
protected as its tetrahydropyranyl (THP) derivative (20, prepared as detailed in the Experimental Section) provided intermediate 11 functionalized for N–O
bond formation yet permitted subsequent spirocyclization and HCl addition
to the activated cyclopropane and could be readily deprotected without
competitive N-Boc deprotection or N–O bond
cleavage. Lactone 15 was observed in the reaction mixture,
could be isolated and characterized, and converts to product 11 when subjected to the reaction conditions, indicating that 15 can serve as an intermediate in the generation of 11 (Figure 2). Direct transannularAr-3′ spirocyclization upon Mitsunobu activation of the secondary
alcohol 11 (5 equiv of 1,1′-(azodicarbonyl)dipiperidine
(ADDP), 5 equiv of Bu3P, THF, 23 °C, 1 h, 75%) provided 12. Subsequent treatment of 12 with 4 N HCl in
EtOAc (−78 °C, 2 h, 61–78%) afforded 13 derived from a stereoelectronically controlled regioselective cyclopropane
cleavage and acid-catalyzed THP deprotection without competitive N-Boc deprotection provided that the reaction was carried
out and quenched at low temperature. The key oxazinone was closed
with N–O bond formation upon exposure of 13 to
Swern oxidation conditions (3 equiv of (COCl)2, 6 equiv
of DMSO, CH2Cl2), yielding 14 (50%)
in an improved yield relative to our original report.[10] More careful control of the reaction conditions, especially
the reaction temperature (−78 °C, 30 min and −15
°C, 2 h vs −78 to −10 °C, 2 h) served to substantially
improve the conversion of 13 to 14 (50 vs
20%) originally reported.[10] As disclosed
in our original work,[10] this represents
a new and unique method for intramolecular formation of an N–O
bond and presumably entails activation of the hydroxamic acid alcohol
as its dimethyl sulfoxonium cation for subsequent intramolecularphenol
displacement. Additionally and in the conversion of 12 to 13, the lactone byproduct 16 (19%)
was also isolated, and it was occasionally detected in the conversion
of 13 to 14 as a minor byproduct but not
quantitated.
Scheme 1
Asymmetric Synthesis of 14 and 3
Figure 2
Structures of 15–17.
Structures of 15–17.The optical purity of 14 was established by
chiral
phase HPLC (Chiralcel OD column, 0.46 × 25 cm, 5% n class="Chemical">i-PrOH/hexane) and established to be 99% ee, reflecting the optical
purity of the starting (S)-glycidal 3-nosylate (99%
ee) (see Figure S1, Supporting Information). As described previously,[10] acid-catalyzed N-Boc deprotection of 14 (4 N HCl, EtOAc, 25
°C, 15 min) and immediate coupling of the resulting HCl salt
with 17 (3 equiv of 1-ethyl-3-(3-(dimethylamino)propyl)carbodiimide
(EDCI), DMF, 25 °C, 20 h, 56%) afforded 3.
Conclusions
An effective, improved, and asymmetric synthesis of a reductively
activated cyclic N-acyl O-amino
phenoln class="Chemical">duocarmycin prodrug based on the simplified 1,2,9,9a-tetrahydrocyclopropa[c]benz-[e]indol-4-one (CBI) DNA alkylation
subunit is described. Its use in furthering the preclinical exploration
of such analogues of the natural products is in progress and will
be disclosed in due course.
A solution of 4 (500 mg, 1.17
mmol) in a 2:1 mixture of DMF–n class="Chemical">CH3OH (0.13 M) was
treated with Pd(OAc)2 (26.2 mg, 0.117 mmol), xantphos (135
mg, 0.234 mmol), and K2CO3 (162 mg, 1.17 mmol)
under N2. CO gas was bubbled through the solution, and
the reaction vessel atmosphere was exchanged with CO. The reaction
vessel was sealed, after which the mixture was heated to 100 °C
and stirred for 17 h. The reaction mixture was cooled to room temperature
and filtered. The filtrate was diluted with EtOAc, washed with H2O and saturated aqueous NaCl, and dried over Na2SO4. The solvent was concentrated, and the residue was
purified by flash chromatography (10–20% EtOAc/hexanes gradient
elution) to give 5 (286 mg, 60%) as an orange solid:
mp 178–179 °C; 1H NMR (CDCl3, 600
MHz) δ 7.73 (dd, J = 8.4, 1.2 Hz, 1H), 7.48
(d, J = 7.2 Hz, 2H), 7.4–7.39 (m, 3H), 7.37
(t, J = 7.2 Hz, 1H), 7.26 (dd, J = 7.2, 1.2 Hz, 1H), 7.10 (s, 1H), 6.62 (s, 1H), 5.14 (s, 2H), 3.31
(s, 3H), 1.55 (s, 9H); 13C NMR (CDCl3, 150 MHz)
δ 171.6, 154.7, 152.7, 137.0, 135.9, 135.4, 129.9, 128.95, 128.92
(2C), 128.7 (2C), 128.6, 126.1, 123.5, 118.1, 107.4, 100.5, 81.0,
71.4, 51.9, 28.5 (3C); IR (film) νmax 1717, 1543,
1240, 1155 cm–1; ESI-TOF HRMS m/z 408.1808 (M + H+, C24H25NO5 requires 408.1805).
A suspension of 5 (2.12 g,
5.20 mmol) and NIS (2.23 g, 10.4 mmol) inn class="Chemical">toluene (124 mL) was treated
with acetic acid (1.1 mL) under Ar in the dark. The reaction flask
was wrapped with aluminum foil and stirred at 25 °C in the dark
for 17 h. The reaction mixture was poured into H2O and
extracted with EtOAc. The organic layer was washed with saturated
aqueous NaCl, dried over Na2SO4, and concentrated.
The residue was purified by flash chromatography (10–25% EtOAc/hexanes
gradient elution) to give 6 (2.28 g, 82%) as a pale tan
solid: mp 172 °C; 1H NMR (CDCl3, 500 MHz)
δ 8.16–8.14 (m, 2H), 7.51–7.48 (m, 3H), 7.42 (t, J = 8.0 Hz, 2H), 7.38–7.35 (m, 2H), 7.31 (dd, J = 7.0, 1.0 Hz, 1H), 5.19 (s, 2H), 3.24 (s, 3H), 1.58 (s,
9H); 13C NMR (CDCl3, 150 MHz) δ 207.1,
171.1, 153.4, 152.5, 135.5, 134.3, 131.6, 130.5, 129.4 (2C), 128.7
(2C), 127.1, 125.2, 124.0, 118.6, 100.2, 81.6, 71.7, 52.0, 31.1, 28.5
(3C); IR (film) νmax 2928, 1732, 1620, 1497, 1364,
1279, 1229, 1155 cm–1; ESI-TOF HRMS m/z 534.0769 (M + H+, C24H24INO5 requires 534.0772).
A stirred
solution of (COCl)2 (6.2 μL, 0.074 mmol) in freshly
distilled n class="Chemical">CH2Cl2 (1.0 mL) at −78 °C
was treated with Me2SO (10.5 μL, 0.148 mmol) in 0.25
mL of freshly distilled CH2Cl2 dropwise. After
30 min, compound 13 (10.0 mg, 0.0246 mmol) in 2.0 mL
of freshly distilled CH2Cl2 was added dropwise
and the reaction mixture was stirred at −78 °C for 30
min, after which the reaction mixture was warmed to −15 °C
and stirred for 2 h. The reaction was quenched with the addition of
saturated aqueous NH4Cl, and the mixture was extracted
with EtOAc. The organic layer was washed with saturated aqueous NaCl,
dried over Na2SO4, and concentrated. The residue
was purified by PTLC (50% EtOAc/hexanes elution) to provide 14 (4.75 mg, 50%) as a pale yellow solid: mp 147 °C; 1H NMR (acetone-d6, 600 MHz) δ
7.99 (d, J = 8.4 Hz, 1H), 7.82 (d, J = 7.2 Hz, 1H), 7.77 (br, 1H), 7.63 (t, J = 7.8
Hz, 1H), 4.21 (m, 2H), 4.14 (m, 1H), 4.00 (dd, J =
11.1, 3.6 Hz, 1H), 3.79 (dd, J = 8.4, 11.4 Hz, 1H),
3.56 (s, 3H), 1.58 (s, 9H); 13C NMR (acetone-d6, 150 MHz) δ 161.8, 153.7, 153.3, 144.8, 131.2,
130.0, 127.9, 123.9, 121.6, 118.5, 118.1, 99.2, 82.7, 54.7, 48.7,
45.5, 36.2, 29.5 (3C); IR (film) νmax 2978, 1702,
1404, 1141 cm–1; [α]23D −45 (c 1.0, THF); ESI-TOF HRMS m/z 389.1268 (M + H+, C20H21ClN2O4 requires 389.1263).
A solution of 18 (4.30 g,
17.1 mmol) in DMF (50 mL) was treated with n class="Chemical">NaH (60% dispersion in
mineral oil, 821 mg, 20.5 mmol) at 0 °C and stirred at the same
temperature for 1 h, after which iodomethane (3.2 mL, 51.3 mmol) was
added. The reaction mixture was stirred at room temperature overnight
before being poured into ice-cold H2O. The mixture was
extracted with EtOAc, washed with H2O and saturated aqueous
NaCl, and dried over Na2SO4. The solvent was
removed, and the residue was purified by flash chromatography (10–15%
EtOAc/hexanes gradient elution) to give 19 (3.89 g, 86%)
as a colorless oil: 1H NMR (CDCl3, 600 MHz)
δ 7.37–7.31 (m, 5H), 5.19 (d, J = 12.0
Hz, 1H), 5.16 (d, J = 12.0 Hz, 1H), 5.02 (t, J = 3.0 Hz, 1H), 4.02 (ddd, J = 12.0, 9.0,
3.0 Hz, 1H), 3.60 (dddd, J = 11.4, 4.2, 4.2, 1.8
Hz, 1H), 3.28 (s, 3H), 1.79–1.72 (m, 3H), 1.64–1.54
(m, 3H); 13C NMR (CDCl3, 150 MHz) δ 157.8,
136.2, 128.6, 128.3, 128.1, 103.0, 67.9, 62.8, 38.7, 28.6, 25.3, 19.0;
IR (film) νmax 2940, 2857, 1703, 1037 cm–1; ESI-TOF HRMS m/z 266.1390 (M
+ H+, C14H19NO4 requires
266.1387).
A
solution of 19 (1.0 g, 3.77 mmol) in anhydrous Et2O (30 mL) was treated with 10% n class="Chemical">Pd/C (80 mg, 0.075 mmol), after
which the atmosphere was exchanged with H2. The reaction
mixture was stirred under H2 at room temperature for 2
h. The reaction mixture was diluted with Et2O, filtered
through Celite, and concentrated in an ice-cold bath under reduced
pressure to give 20 (530 mg, 87%) as a colorless oil: 1H NMR (CDCl3, 600 MHz) δ 5.68 (m, 1H), 4.80
(dd, J = 6.0, 3.0 Hz, 1H), 3.98–3.92 (m, 1H),
3.58–3.55 (m, 1H), 2.78 (s, 3H), 1.83–1.75 (m, 1H),
1.74–1.69 (m, 1H), 1.59–1.46 (m, 4H); 13C
NMR (CDCl3, 150 MHz) δ 101.3, 63.3, 39.7, 29.4, 25.5,
20.4; IR (film) νmax 2940, 2857, 1073, 1037 cm–1; ESI-TOF HRMS m/z 132.1018 (M + H+, C6H13NO2 requires 132.1019).
Authors: M Ichimura; T Ogawa; K Takahashi; E Kobayashi; I Kawamoto; T Yasuzawa; I Takahashi; H Nakano Journal: J Antibiot (Tokyo) Date: 1990-08 Impact factor: 2.649
Authors: L H Hurley; C S Lee; J P McGovren; M A Warpehoski; M A Mitchell; R C Kelly; P A Aristoff Journal: Biochemistry Date: 1988-05-17 Impact factor: 3.162
Authors: I Takahashi; K Takahashi; M Ichimura; M Morimoto; K Asano; I Kawamoto; F Tomita; H Nakano Journal: J Antibiot (Tokyo) Date: 1988-12 Impact factor: 2.649
Authors: D G Martin; C Biles; S A Gerpheide; L J Hanka; W C Krueger; J P McGovren; S A Mizsak; G L Neil; J C Stewart; J Visser Journal: J Antibiot (Tokyo) Date: 1981-09 Impact factor: 2.649