Literature DB >> 25242913

In situ microfluidic dialysis for biological small-angle X-ray scattering.

Magda Skou1, Søren Skou2, Thomas G Jensen3, Bente Vestergaard1, Richard E Gillilan4.   

Abstract

Owing to the demand for low sample consumption and automated sample changing capabilities at synchrotron small-angle X-ray (solution) scattering (SAXS) beamlines, X-ray microfluidics is receiving continuously increasing attention. Here, a remote-controlled microfluidic device is presented for simultaneous SAXS and ultraviolet absorption measurements during protein dialysis, integrated directly on a SAXS beamline. Microfluidic dialysis can be used for monitoring structural changes in response to buffer exchange or, as demonstrated, protein concentration. By collecting X-ray data during the concentration procedure, the risk of inducing protein aggregation due to excessive concentration and storage is eliminated, resulting in reduced sample consumption and improved data quality. The proof of concept demonstrates the effect of halted or continuous flow in the microfluidic device. No sample aggregation was induced by the concentration process at the levels achieved in these experiments. Simulations of fluid dynamics and transport properties within the device strongly suggest that aggregates, and possibly even higher-order oligomers, are preferentially retained by the device, resulting in incidental sample purification. Hence, this versatile microfluidic device enables investigation of experimentally induced structural changes under dynamically controllable sample conditions.

Entities:  

Keywords:  SAXS; buffer exchange; dialysis; microfluidics; protein solution concentration

Year:  2014        PMID: 25242913      PMCID: PMC4119951          DOI: 10.1107/S1600576714012618

Source DB:  PubMed          Journal:  J Appl Crystallogr        ISSN: 0021-8898            Impact factor:   3.304


  20 in total

1.  Compactness of the denatured state of a fast-folding protein measured by submillisecond small-angle x-ray scattering.

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Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-31       Impact factor: 11.205

2.  Collapse and search dynamics of apomyoglobin folding revealed by submillisecond observations of alpha-helical content and compactness.

Authors:  Takanori Uzawa; Shuji Akiyama; Tetsunari Kimura; Satoshi Takahashi; Koichiro Ishimori; Isao Morishima; Tetsuro Fujisawa
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-07       Impact factor: 11.205

Review 3.  The use of asymmetrical flow field-flow fractionation in pharmaceutics and biopharmaceutics.

Authors:  Wolfgang Fraunhofer; Gerhard Winter
Journal:  Eur J Pharm Biopharm       Date:  2004-09       Impact factor: 5.571

4.  Publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution.

Authors:  David A Jacques; J Mitchell Guss; Dmitri I Svergun; Jill Trewhella
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-05-17

5.  Equilibrium cluster formation in concentrated protein solutions and colloids.

Authors:  Anna Stradner; Helen Sedgwick; Frédéric Cardinaux; Wilson C K Poon; Stefan U Egelhaaf; Peter Schurtenberger
Journal:  Nature       Date:  2004-11-25       Impact factor: 49.962

6.  Microfluidics of soft matter investigated by small-angle X-ray scattering.

Authors:  Alexander Otten; Sarah Köster; Bernd Struth; Anatoly Snigirev; Thomas Pfohl
Journal:  J Synchrotron Radiat       Date:  2005-10-18       Impact factor: 2.616

7.  Self-sealed vertical polymeric nanoporous-junctions for high-throughput nanofluidic applications.

Authors:  Sung Jae Kim; Jongyoon Han
Journal:  Anal Chem       Date:  2008-04-02       Impact factor: 6.986

Review 8.  Field-flow fractionation: analysis of macromolecular, colloidal, and particulate materials.

Authors:  J C Giddings
Journal:  Science       Date:  1993-06-04       Impact factor: 47.728

9.  Conformational landscape of cytochrome c folding studied by microsecond-resolved small-angle x-ray scattering.

Authors:  Shuji Akiyama; Satoshi Takahashi; Tetsunari Kimura; Koichiro Ishimori; Isao Morishima; Yukihiro Nishikawa; Tetsuro Fujisawa
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-02       Impact factor: 11.205

10.  Effects of urea and trimethylamine-N-oxide (TMAO) on the interactions of lysozyme in solution.

Authors:  Marc Niebuhr; Michel H J Koch
Journal:  Biophys J       Date:  2005-06-24       Impact factor: 4.033

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  5 in total

1.  Preparing monodisperse macromolecular samples for successful biological small-angle X-ray and neutron-scattering experiments.

Authors:  Cy M Jeffries; Melissa A Graewert; Clément E Blanchet; David B Langley; Andrew E Whitten; Dmitri I Svergun
Journal:  Nat Protoc       Date:  2016-10-06       Impact factor: 13.491

2.  3D-printed SAXS chamber for controlled in situ dialysis and optical characterization.

Authors:  Tamara Ehm; Julian Philipp; Martin Barkey; Martina Ober; Achim Theo Brinkop; David Simml; Miriam von Westphalen; Bert Nickel; Roy Beck; Joachim O Rädler
Journal:  J Synchrotron Radiat       Date:  2022-05-25       Impact factor: 2.557

3.  Smaller capillaries improve the small-angle X-ray scattering signal and sample consumption for biomacromolecular solutions.

Authors:  Martin A Schroer; Clement E Blanchet; Andrey Yu Gruzinov; Melissa A Gräwert; Martha E Brennich; Nelly R Hajizadeh; Cy M Jeffries; Dmitri I Svergun
Journal:  J Synchrotron Radiat       Date:  2018-06-26       Impact factor: 2.616

Review 4.  Investigating increasingly complex macromolecular systems with small-angle X-ray scattering.

Authors:  Bente Vestergaard; Zehra Sayers
Journal:  IUCrJ       Date:  2014-10-21       Impact factor: 4.769

Review 5.  Microfluidic devices for small-angle neutron scattering.

Authors:  Carlos G Lopez; Takaichi Watanabe; Marco Adamo; Anne Martel; Lionel Porcar; João T Cabral
Journal:  J Appl Crystallogr       Date:  2018-06-01       Impact factor: 3.304

  5 in total

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