Literature DB >> 25238653

Function and dynamics of macromolecular complexes explored by integrative structural and computational biology.

Michael D Purdy1, Brad C Bennett1, William E McIntire2, Ali K Khan1, Peter M Kasson3, Mark Yeager4.   

Abstract

Three vignettes exemplify the potential of combining EM and X-ray crystallographic data with molecular dynamics (MD) simulation to explore the architecture, dynamics and functional properties of multicomponent, macromolecular complexes. The first two describe how EM and X-ray crystallography were used to solve structures of the ribosome and the Arp2/3-actin complex, which enabled MD simulations that elucidated functional dynamics. The third describes how EM, X-ray crystallography, and microsecond MD simulations of a GPCR:G protein complex were used to explore transmembrane signaling by the β-adrenergic receptor. Recent technical advancements in EM, X-ray crystallography and computational simulation create unprecedented synergies for integrative structural biology to reveal new insights into heretofore intractable biological systems.
Copyright © 2014. Published by Elsevier Ltd.

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Year:  2014        PMID: 25238653      PMCID: PMC6387792          DOI: 10.1016/j.sbi.2014.08.006

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  5 in total

1.  Chemical cross-linking and mass spectrometry to determine the subunit interaction network in a recombinant human SAGA HAT subcomplex.

Authors:  Nha-Thi Nguyen-Huynh; Grigory Sharov; Clément Potel; Pélagie Fichter; Simon Trowitzsch; Imre Berger; Valérie Lamour; Patrick Schultz; Noëlle Potier; Emmanuelle Leize-Wagner
Journal:  Protein Sci       Date:  2015-04-14       Impact factor: 6.725

2.  Ordering Protein Contact Matrices.

Authors:  Chuan Xu; Guillaume Bouvier; Benjamin Bardiaux; Michael Nilges; Thérèse Malliavin; Abdel Lisser
Journal:  Comput Struct Biotechnol J       Date:  2018-03-16       Impact factor: 7.271

3.  Local and global influences on protein turnover in neurons and glia.

Authors:  Aline R Dörrbaum; Lisa Kochen; Julian D Langer; Erin M Schuman
Journal:  Elife       Date:  2018-06-19       Impact factor: 8.140

4.  Reporting on the future of integrative structural biology ORAU workshop.

Authors:  George L Hamilton; Joshua Alper; Hugo Sanabria
Journal:  Front Biosci (Landmark Ed)       Date:  2020-01-01

Review 5.  Spotlight on the Ballet of Proteins: The Structural Dynamic Properties of Proteins Illuminated by Solution NMR.

Authors:  Yuji Tokunaga; Thibault Viennet; Haribabu Arthanari; Koh Takeuchi
Journal:  Int J Mol Sci       Date:  2020-03-06       Impact factor: 5.923

  5 in total

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