Literature DB >> 25218377

LNA-based in situ hybridization detection of mRNAs in embryos.

Diana K Darnell1, Parker B Antin.   

Abstract

In situ hybridization (ISH) in embryos allows the visualization of specific RNAs as a readout of gene expression during normal development or after experimental manipulations. ISH using short DNA probes containing locked nucleic acid nucleotides (LNAs) holds the additional advantage of allowing the detection of specific RNA splice variants or of closely related family members that differ in only short regions, creating new diagnostic and detection opportunities. Here we describe methods for using short (14-24 nt) DNA probes containing LNA nucleotides to detect moderately to highly expressed RNAs in whole chick embryos during the first 5 days of embryonic development. The protocol is easily adaptable for use with embryos of other vertebrate species.

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Year:  2014        PMID: 25218377      PMCID: PMC5148130          DOI: 10.1007/978-1-4939-1459-3_6

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  11 in total

1.  Culture of avian embryos.

Authors:  D K Darnell; G C Schoenwolf
Journal:  Methods Mol Biol       Date:  2000

2.  Potent and nontoxic antisense oligonucleotides containing locked nucleic acids.

Authors:  C Wahlestedt; P Salmi; L Good; J Kela; T Johnsson; T Hökfelt; C Broberger; F Porreca; J Lai; K Ren; M Ossipov; A Koshkin; N Jakobsen; J Skouv; H Oerum; M H Jacobsen; J Wengel
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-09       Impact factor: 11.205

3.  Dramatically improved RNA in situ hybridization signals using LNA-modified probes.

Authors:  Rune Thomsen; Peter Stein Nielsen; Torben Heick Jensen
Journal:  RNA       Date:  2005-09-21       Impact factor: 4.942

4.  In situ detection of miRNAs in animal embryos using LNA-modified oligonucleotide probes.

Authors:  Wigard P Kloosterman; Erno Wienholds; Ewart de Bruijn; Sakari Kauppinen; Ronald H A Plasterk
Journal:  Nat Methods       Date:  2006-01       Impact factor: 28.547

5.  A series of normal stages in the development of the chick embryo. 1951.

Authors:  V Hamburger; H L Hamilton
Journal:  Dev Dyn       Date:  1992-12       Impact factor: 3.780

6.  Whole mount in situ hybridization detection of mRNAs using short LNA containing DNA oligonucleotide probes.

Authors:  Diana K Darnell; Stacey Stanislaw; Simran Kaur; Parker B Antin
Journal:  RNA       Date:  2010-01-19       Impact factor: 4.942

7.  A series of normal stages in the development of the chick embryo.

Authors:  V HAMBURGER; H L HAMILTON
Journal:  J Morphol       Date:  1951-01       Impact factor: 1.804

8.  LNA-modified oligonucleotides are highly efficient as FISH probes.

Authors:  A Silahtaroglu; H Pfundheller; A Koshkin; N Tommerup; S Kauppinen
Journal:  Cytogenet Genome Res       Date:  2004       Impact factor: 1.636

9.  Locked nucleic acid containing antisense oligonucleotides enhance inhibition of HIV-1 genome dimerization and inhibit virus replication.

Authors:  Joacim Elmén; Hong-Yan Zhang; Bartek Zuber; Karl Ljungberg; Britta Wahren; Claes Wahlestedt; Zicai Liang
Journal:  FEBS Lett       Date:  2004-12-17       Impact factor: 4.124

10.  Primer3Plus, an enhanced web interface to Primer3.

Authors:  Andreas Untergasser; Harm Nijveen; Xiangyu Rao; Ton Bisseling; René Geurts; Jack A M Leunissen
Journal:  Nucleic Acids Res       Date:  2007-05-07       Impact factor: 16.971

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  2 in total

1.  Evaluation of fluorescence in situ hybridization techniques to study long non-coding RNA expression in cultured cells.

Authors:  Ricardo J Soares; Giulia Maglieri; Tony Gutschner; Sven Diederichs; Anders H Lund; Boye S Nielsen; Kim Holmstrøm
Journal:  Nucleic Acids Res       Date:  2018-01-09       Impact factor: 16.971

2.  Identification and Expression of Neurotrophin-6 in the Brain of Nothobranchius furzeri: One More Piece in Neurotrophin Research.

Authors:  Adele Leggieri; Chiara Attanasio; Antonio Palladino; Alessandro Cellerino; Carla Lucini; Marina Paolucci; Eva Terzibasi Tozzini; Paolo de Girolamo; Livia D'Angelo
Journal:  J Clin Med       Date:  2019-04-30       Impact factor: 4.241

  2 in total

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