Literature DB >> 25217566

Yeast mutation accumulation experiment supports elevated mutation rates at highly transcribed sites.

Xiaoshu Chen1, Jianzhi Zhang2.   

Abstract

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Year:  2014        PMID： 25217566      PMCID： PMC4191789          DOI： 10.1073/pnas.1412284111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  5 in total

1.  Genomic evidence for elevated mutation rates in highly expressed genes.

Authors:  Chungoo Park; Wenfeng Qian; Jianzhi Zhang
Journal:  EMBO Rep       Date:  2012-11-13       Impact factor: 8.807

2.  Precise estimates of mutation rate and spectrum in yeast.

Authors:  Yuan O Zhu; Mark L Siegal; David W Hall; Dmitri A Petrov
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-20       Impact factor: 11.205

3.  No gene-specific optimization of mutation rate in Escherichia coli.

Authors:  Xiaoshu Chen; Jianzhi Zhang
Journal:  Mol Biol Evol       Date:  2013-03-26       Impact factor: 16.240

4.  Whole-genome mutational biases in bacteria.

Authors:  Peter A Lind; Dan I Andersson
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-10       Impact factor: 11.205

5.  Nascent transcript sequencing visualizes transcription at nucleotide resolution.

Authors:  L Stirling Churchman; Jonathan S Weissman
Journal:  Nature       Date:  2011-01-20       Impact factor: 49.962
  5 in total
  12 in total

Review 1.  Evolutionary biology through the lens of budding yeast comparative genomics.

Authors:  Souhir Marsit; Jean-Baptiste Leducq; Éléonore Durand; Axelle Marchant; Marie Filteau; Christian R Landry
Journal:  Nat Rev Genet       Date:  2017-07-17       Impact factor: 53.242

Review 2.  Genetic drift, selection and the evolution of the mutation rate.

Authors:  Michael Lynch; Matthew S Ackerman; Jean-Francois Gout; Hongan Long; Way Sung; W Kelley Thomas; Patricia L Foster
Journal:  Nat Rev Genet       Date:  2016-10-14       Impact factor: 53.242

3.  Reply to Chen and Zhang: On interpreting genome-wide trends from yeast mutation accumulation data.

Authors:  Yuan O Zhu; Mark L Siegal; David W Hall; Dmitri A Petrov
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-12       Impact factor: 11.205

4.  Higher Germline Mutagenesis of Genes with Stronger Testis Expressions Refutes the Transcriptional Scanning Hypothesis.

Authors:  Haoxuan Liu; Jianzhi Zhang
Journal:  Mol Biol Evol       Date:  2020-11-01       Impact factor: 16.240

Review 5.  Determinants of the rate of protein sequence evolution.

Authors:  Jianzhi Zhang; Jian-Rong Yang
Journal:  Nat Rev Genet       Date:  2015-06-09       Impact factor: 53.242

Review 6.  Recent insights into the evolution of mutation rates in yeast.

Authors:  Robert H Melde; Kevin Bao; Nathaniel P Sharp
Journal:  Curr Opin Genet Dev       Date:  2022-07-11       Impact factor: 4.665

7.  Nascent RNA folding mitigates transcription-associated mutagenesis.

Authors:  Xiaoshu Chen; Jian-Rong Yang; Jianzhi Zhang
Journal:  Genome Res       Date:  2015-10-30       Impact factor: 9.043

8.  The Contribution of Purifying Selection, Linkage, and Mutation Bias to the Negative Correlation between Gene Expression and Polymorphism Density in Yeast Populations.

Authors:  Agnieszka Marek; Katarzyna Tomala
Journal:  Genome Biol Evol       Date:  2018-11-01       Impact factor: 3.416

9.  Mode and Tempo of Microsatellite Length Change in a Malaria Parasite Mutation Accumulation Experiment.

Authors:  Marina McDew-White; Xue Li; Standwell C Nkhoma; Shalini Nair; Ian Cheeseman; Tim J C Anderson
Journal:  Genome Biol Evol       Date:  2019-07-01       Impact factor: 3.416

10.  A First Insight into the Genome of the Filter-Feeder Mussel Mytilus galloprovincialis.

Authors:  Maria Murgarella; Daniela Puiu; Beatriz Novoa; Antonio Figueras; David Posada; Carlos Canchaya
Journal:  PLoS One       Date:  2016-03-15       Impact factor: 3.240
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