| Literature DB >> 25211472 |
Fei-Fei Wu1, Xiao-Feng He2, Hu-Wei Shen3, Gui-Jun Qin1.
Abstract
BACKGROUND: The previous published data on the association between the X-ray repair cross-conplementation group 1 (XRCC1) polymorphisms and thyroid cancer risk remained controversial. Hence, we performed a meta-analysis on all available studies that provided 1729 cases and 3774 controls (from 11 studies) for XRCC1 Arg399Gln, 1040 cases and 2487 controls for Arg194Trp (from 7 studies), and 1432 cases and 3356 controls for Arg280His (from 8 studies). METHODOLOGY/PRINCIPALEntities:
Mesh:
Substances:
Year: 2014 PMID: 25211472 PMCID: PMC4161346 DOI: 10.1371/journal.pone.0087764
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Study flow chart explaining the selection of the 10 eligible articles included in the meta-analysis.
Characteristics of studies included in the meta-analysis.
| First author | Year | Country | Ethnicity | SC | SNP | Genotyping method |
| Santos | 2012 | Portugal | Caucasian | HB | Arg399Gln | PCR-RFLP |
| Santos | 2012 | Portugal | Caucasian | HB | Arg194Trp | PCR-RFLP |
| Fard-Esfahani | 2011 | Iran | Caucasian | HB | Arg399Gln | PCR-RFLP |
| Fard-Esfahani | 2011 | Iran | Caucasian | HB | Arg194Trp | PCR-RFLP |
| Fard-Esfahani | 2011 | Iran | Caucasian | HB | Arg280His | PCR-RFLP |
| Ryu | 2011 | Korea | Asian | HB | Arg399Gln | PCR-RFLP |
| Ryu | 2011 | Korea | Asian | HB | Arg194Trp | PCR-RFLP |
| García-Quispes | 2011 | Spain | Caucasian | HB | Arg399Gln | iPLEX |
| García-Quispes | 2011 | Spain | Caucasian | HB | Arg280His | iPLEX |
| Akulevich | 2009 | RB | Caucasian | HB | Arg399Gln | PCR-RFLP |
| Akulevich | 2009 | RB | Caucasian | PB | Arg399Gln | PCR-RFLP |
| Akulevich | 2009 | RB | Caucasian | HB | Arg280His | PCR-RFLP |
| Akulevich | 2009 | RB | Caucasian | PB | Arg280His | PCR-RFLP |
| Ho | 2009 | USA | Mixed | HB | Arg399Gln | PCR-RFLP |
| Ho | 2009 | USA | Mixed | HB | Arg194Trp | PCR-RFLP |
| Ho | 2009 | USA | Mixed | HB | Arg280His | PCR-RFLP |
| Siraj | 2009 | Saudi | ME | HB | Arg399Gln | PCR-RFLP |
| Siraj | 2009 | Saudi | ME | HB | Arg280His | PCR-RFLP |
| Chiang | 2008 | China | Asian | HB | Arg399Gln | Taqman |
| Chiang | 2008 | China | Asian | HB | Arg194Trp | Taqman |
| Chiang | 2008 | China | Asian | HB | Arg280His | Taqman |
| Zhu | 2004 | China | Asian | HB | Arg399Gln | PCR-RFLP |
| Zhu | 2004 | China | Asian | HB | Arg194Trp | PCR-RFLP |
| Sigurdson | 2009 | Kazakhstan | Mixed | N | Arg399Gln | Taqman |
| Sigurdson | 2009 | Kazakhstan | Mixed | N | Arg194Trp | Taqman |
| Sigurdson | 2009 | Kazakhstan | Mixed | N | Arg280His | Taqman |
HT, Histological type; RB Russia and Belarus, HB hospital-based studies, N nested case-control studies, PB population-based studies, SC source of controls,
Genotype distribution of XRCC1 Arg399Gln polymorphism used in the meta-analysis.
| First author | Year | Case | Control | HWE | MAF | ||||
| Arg/Arg | Arg/Gln | Gln/Gln | Arg/Arg | Arg/Gln | Gln/Gln | ||||
| Santos | 2012 | 46 | 50 | 13 | 87 | 105 | 25 | 0.43 | 0.36 |
| Fard-Esfahani | 2011 | 78 | 60 | 17 | 83 | 87 | 20 | 0.69 | 0.33 |
| Ryu | 2011 | 87 | 17 | 7 | 72 | 19 | 9 | <0.01 | 0.19 |
| García-Quispes | 2011 | 153 | 186 | 47 | 196 | 212 | 66 | 0.48 | 0.36 |
| Akulevich | 2009 | 65 | 53 | 14 | 158 | 193 | 47 | 0.30 | 0.36 |
| Akulevich | 2009 | 55 | 50 | 18 | 75 | 100 | 22 | 0.18 | 0.37 |
| Ho | 2009 | 133 | 99 | 19 | 220 | 216 | 67 | 0.23 | 0.35 |
| Siraj | 2008 | 35 | 13 | 2 | 142 | 72 | 15 | 0.16 | 0.22 |
| Chiang | 2008 | 150 | 110 | 23 | 277 | 165 | 27 | 0.71 | 0.23 |
| Zhu | 2004 | 49 | 44 | 12 | 57 | 45 | 3 | 0.09 | 0.24 |
| Sigurdson | 2009 | 12 | 10 | 2 | 460 | 343 | 89 | 0.036 | 0.29 |
HWE, Hardy-Weinberg equilibrium; MAF minor aller freqyency; Arg, the major allele, Gln, the minor allele.
Genotype distribution of XRCC1 Arg194Trp polymorphism used in the meta-analysis.
| First author | Year | Case | Control | HWE | MAF | ||||
| Arg/Arg | Arg/Trp | Trp/Trp | Arg/Arg | Arg/Trp | Trp/Trp | ||||
| Santos | 2012 | 98 | 8 | 2 | 196 | 21 | 0 | 0.45 | 0.05 |
| Fard-Esfahani | 2011 | 136 | 18 | 3 | 166 | 20 | 1 | 0.64 | 0.06 |
| Ryu | 2011 | 59 | 43 | 9 | 37 | 49 | 14 | 0.73 | 0.39 |
| Ho | 2009 | 203 | 45 | 3 | 433 | 69 | 1 | 0.31 | 0.07 |
| Zhu | 2004 | 50 | 52 | 3 | 48 | 51 | 6 | 0.11 | 0.30 |
| Sigurdson | 2009 | 20 | 5 | 665 | 241 | - | - | ||
| Chiang | 2008 | 127 | 119 | 37 | 234 | 199 | 36 | 0.48 | 0.29 |
HWE, Hardy-Weinberg equilibrium; MAF minor aller freqyency; Arg, the major allele; Trp, the minor allele.
Results of meta-analysis for Arg399Gln, Arg194Trp, and Arg280His polymorphisms and the risk of thyroid cancer.
| Generic model | Recessive model | Dominant model | Homozygote | Heterozygote | Additive model | |||||||||||
| Arg399Gln | n | Gln/Gln vs. Arg/Gln+Arg/Arg | Arg/Gln+Gln/Gln vs. Arg/Arg | Gln/Gln vs. Arg/Arg | Arg/Gln vs. Arg/Arg | Gln vs. Arg | ||||||||||
| OR (95%CI) |
|
| OR (95%CI) |
|
| OR (95%CI) |
|
| OR (95%CI) |
|
| OR (95%CI) |
|
| ||
| Overall | 11 (1729/3774) | 0.95 (0.77–1.15) | 0.160 | 30.0 | 0.89 (0.75–1.05) | 0.089 | 39.1 | 0.92 (0.69–1.23)* | 0.090 | 38.9 | 0.91 (0.80–1.03) | 0.240 | 21.4 | 0.93 (0.81–1.07)* | 0.031 | 49.5 |
| Ethnicity | ||||||||||||||||
| Caucasian | 5 (905/1476) | 0.97 (0.75–1.26) | 0.822 | 0.0 | 0.87 (0.74–1.03) | 0.342 | 11.2 | 0.91 (0.69–1.19) | 0.937 | 0.0% | 0.87 (0.72–1.04) | 0.193 | 34.2 | 0.92 (0.82–1.05) | 0.744 | 0.0 |
| Asian | 3 (499/674) | 1.50 (0.64–3.50) | 0.086 | 59.2 | 1.19 (0.93–1.51) | 0.217 | 34.6 | 1.56 (0.63–3.86)* | 0.067 | 63.1 | 1.14 (0.88–1.47) | 0.451 | 0.0 | 1.15 (0.81–1.63)* | 0.086 | 59.2 |
| Mixed | 2 (275/1395) |
| 0.588 | 0.0 |
| 0.326 | 0.0 |
| 0.460 | 0.0% | 0.80 (0.59–1.07) | 0.403 | 0.0 |
| 0.308 | 3.6 |
| Histological subtype | ||||||||||||||||
| PTC | 7 (623/2138) | 1.13 (0.82–1.57) | 0.323 | 14.1 | 0.85 (0.70–1.04) | 0.382 | 5.9 | 1.02 (0.73–1.43) | 0.238 | 25.1 | 0.82 (0.66–1.01) | 0.620 | 0.0 | 0.94 (0.80–1.09) | 0.188 | 31.4 |
All summary ORs were calculated using fixed-effects models. In the case of significant heterogeneity (indicated by *), ORs were calculated using random-effects models.
Figure 2Begg's funnel plot of the meta-analysis of thyroid cancer risk and XRCC1 Arg399Gln polymorphism.
(Homozygote model and dominant model).
Figure 4Begg's funnel plot of the meta-analysis of thyroid cancer risk and XRCC1 Arg194Trp polymorphism.
(Homozygote model and dominant model).
Genotype distribution of XRCC1 Arg280His polymorphism used in the meta-analysis.
| First author | Year | Case | Control | HWE | MAF | ||||
| Arg/Arg | Arg/His | His/His | Arg/Arg | Arg/His | His/His | ||||
| Fard-Esfahani | 2011 | 146 | 23 | 1 | 173 | 18 | 2 | 0.07 | 0.06 |
| García-Quispes | 2011 | 337 | 58 | 3 | 426 | 44 | 3 | 0.12 | 0.05 |
| Akulevich | 2009 | 117 | 15 | 0 | 366 | 32 | 0 | 0.40 | 0.04 |
| Akulevich | 2009 | 113 | 10 | 0 | 176 | 19 | 0 | 0.47 | 0.05 |
| Ho | 2009 | 229 | 22 | 0 | 453 | 50 | 0 | 0.24 | 0.05 |
| Siraj | 2009 | 33 | 12 | 5 | 129 | 79 | 21 | 0.09 | 0.26 |
| Chiang | 2008 | 224 | 54 | 5 | 349 | 113 | 7 | 0.53 | 0.14 |
| Sigurdson | 2009 | 24 | 1 | 800 | 96 | - | - | ||
HWE, Hardy-Weinberg equilibrium; MAF minor aller freqyency; Arg, the major allele, His, the minor allele.