Literature DB >> 25204962

We are all individuals... bioinformatics in the personalized medicine era.

Leander Van Neste1, Wim Van Criekinge.   

Abstract

The medical landscape is evolving at a rapid pace, creating the opportunity for more personalized patient treatment and shifting the way healthcare is approached and thought about. With the availability of (epi)genome-wide, transcriptomic and proteogenomic profiling techniques detailed characterization of a disease at the level of the individual is now possible, offering the opportunity for truly tailored approaches for treatment and patient care. While improvements are still expected, the techniques and the basic analytical tools have reached a state that these can be efficiently deployed in both routine research and clinical practice. Still, some major challenges remain. Notably, holistic approaches, integrating data from several sources, e.g. genomic and epigenomic, will increase the understanding of the underlying biological concepts and provide insight into the causes, effects and effective solutions. However, creating and validating such a knowledge base, potentially for different levels of expertise, and integrating several data points into meaningful information is not trivial.

Entities:  

Mesh:

Year:  2014        PMID: 25204962     DOI: 10.1007/s13402-014-0195-3

Source DB:  PubMed          Journal:  Cell Oncol (Dordr)        ISSN: 2211-3428            Impact factor:   6.730


  89 in total

1.  Biomarkers for detection and prognosis of breast cancer identified by a functional hypermethylome screen.

Authors:  Jana Jeschke; Leander Van Neste; Sabine C Glöckner; Mashaal Dhir; Marilia Freitas Calmon; Valérie Deregowski; Wim Van Criekinge; Ilse Vlassenbroeck; Alexander Koch; Timothy A Chan; Leslie Cope; Craig M Hooker; Kornel E Schuebel; Edward Gabrielson; Andreas Winterpacht; Stephen B Baylin; James G Herman; Nita Ahuja
Journal:  Epigenetics       Date:  2012-07-01       Impact factor: 4.528

2.  SOAP2: an improved ultrafast tool for short read alignment.

Authors:  Ruiqiang Li; Chang Yu; Yingrui Li; Tak-Wah Lam; Siu-Ming Yiu; Karsten Kristiansen; Jun Wang
Journal:  Bioinformatics       Date:  2009-06-03       Impact factor: 6.937

3.  A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome.

Authors:  Marc Sultan; Marcel H Schulz; Hugues Richard; Alon Magen; Andreas Klingenhoff; Matthias Scherf; Martin Seifert; Tatjana Borodina; Aleksey Soldatov; Dmitri Parkhomchuk; Dominic Schmidt; Sean O'Keeffe; Stefan Haas; Martin Vingron; Hans Lehrach; Marie-Laure Yaspo
Journal:  Science       Date:  2008-07-03       Impact factor: 47.728

4.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

5.  Mutational spectra at the hypoxanthine-guanine phosphoribosyltransferase (HPRT) locus in T-lymphocytes of nonsmoking and smoking lung cancer patients.

Authors:  P Hackman; S M Hou; F Nyberg; G Pershagen; B Lambert
Journal:  Mutat Res       Date:  2000-06-22       Impact factor: 2.433

6.  Detection of circulating tumor DNA in early- and late-stage human malignancies.

Authors:  Chetan Bettegowda; Mark Sausen; Rebecca J Leary; Isaac Kinde; Yuxuan Wang; Nishant Agrawal; Bjarne R Bartlett; Hao Wang; Brandon Luber; Rhoda M Alani; Emmanuel S Antonarakis; Nilofer S Azad; Alberto Bardelli; Henry Brem; John L Cameron; Clarence C Lee; Leslie A Fecher; Gary L Gallia; Peter Gibbs; Dung Le; Robert L Giuntoli; Michael Goggins; Michael D Hogarty; Matthias Holdhoff; Seung-Mo Hong; Yuchen Jiao; Hartmut H Juhl; Jenny J Kim; Giulia Siravegna; Daniel A Laheru; Calogero Lauricella; Michael Lim; Evan J Lipson; Suely Kazue Nagahashi Marie; George J Netto; Kelly S Oliner; Alessandro Olivi; Louise Olsson; Gregory J Riggins; Andrea Sartore-Bianchi; Kerstin Schmidt; le-Ming Shih; Sueli Mieko Oba-Shinjo; Salvatore Siena; Dan Theodorescu; Jeanne Tie; Timothy T Harkins; Silvio Veronese; Tian-Li Wang; Jon D Weingart; Christopher L Wolfgang; Laura D Wood; Dongmei Xing; Ralph H Hruban; Jian Wu; Peter J Allen; C Max Schmidt; Michael A Choti; Victor E Velculescu; Kenneth W Kinzler; Bert Vogelstein; Nickolas Papadopoulos; Luis A Diaz
Journal:  Sci Transl Med       Date:  2014-02-19       Impact factor: 17.956

7.  Multiple sequence variants of BRCA2 exon 7 alter splicing regulation.

Authors:  Pascaline Gaildrat; Sophie Krieger; Daniela Di Giacomo; Julie Abdat; Françoise Révillion; Sandrine Caputo; Dominique Vaur; Estelle Jamard; Elodie Bohers; Danielle Ledemeney; Jean-Philippe Peyrat; Claude Houdayer; Etienne Rouleau; Rosette Lidereau; Thierry Frébourg; Agnès Hardouin; Mario Tosi; Alexandra Martins
Journal:  J Med Genet       Date:  2012-09-07       Impact factor: 6.318

8.  Novel methylation biomarker panel for the early detection of pancreatic cancer.

Authors:  Joo Mi Yi; Angela A Guzzetta; Vasudev J Bailey; Stephanie R Downing; Leander Van Neste; Katherine B Chiappinelli; Brian P Keeley; Alejandro Stark; Alexander Herrera; Christopher Wolfgang; Emmanouil P Pappou; Christine A Iacobuzio-Donahue; Michael G Goggins; James G Herman; Tza-Huei Wang; Stephen B Baylin; Nita Ahuja
Journal:  Clin Cancer Res       Date:  2013-10-02       Impact factor: 12.531

9.  Multitarget stool DNA testing for colorectal-cancer screening.

Authors:  Thomas F Imperiale; David F Ransohoff; Steven H Itzkowitz; Theodore R Levin; Philip Lavin; Graham P Lidgard; David A Ahlquist; Barry M Berger
Journal:  N Engl J Med       Date:  2014-03-19       Impact factor: 91.245

10.  Constitutive promoter methylation of BRCA1 and RAD51C in patients with familial ovarian cancer and early-onset sporadic breast cancer.

Authors:  Tamara Hansmann; Galyna Pliushch; Monika Leubner; Patricia Kroll; Daniela Endt; Andrea Gehrig; Sabine Preisler-Adams; Peter Wieacker; Thomas Haaf
Journal:  Hum Mol Genet       Date:  2012-07-27       Impact factor: 6.150

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  2 in total

1.  Personalized cancer medicine: next steps in the genomic era.

Authors:  S Derks; B Diosdado
Journal:  Cell Oncol (Dordr)       Date:  2015-02-27       Impact factor: 6.730

2.  Towards the Design of a Patient-Specific Virtual Tumour.

Authors:  Flavien Caraguel; Anne-Cécile Lesart; François Estève; Boudewijn van der Sanden; Angélique Stéphanou
Journal:  Comput Math Methods Med       Date:  2016-12-19       Impact factor: 2.238

  2 in total

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