Literature DB >> 25204788

Piloting the membranolytic activities of peptides with a self-organizing map.

Yen-Chu Lin1, Jan A Hiss, Petra Schneider, Peter Thelesklaf, Yi Fan Lim, Max Pillong, Fabian M Koehler, Petra S Dittrich, Cornelia Halin, Silja Wessler, Gisbert Schneider.   

Abstract

Antimicrobial peptides (AMPs) show remarkable selectivity toward lipid membranes and possess promising antibiotic potential. Their modes of action are diverse and not fully understood, and innovative peptide design strategies are needed to generate AMPs with improved properties. We present a de novo peptide design approach that resulted in new AMPs possessing low-nanomolar membranolytic activities. Thermal analysis revealed an entropy-driven mechanism of action. The study demonstrates sustained potential of advanced computational methods for designing peptides with the desired activity.
© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  drug discovery; machine learning; membrane interaction; peptide design; vesicles

Mesh:

Substances:

Year:  2014        PMID: 25204788      PMCID: PMC6311381          DOI: 10.1002/cbic.201402231

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  54 in total

Review 1.  Advances in the prediction of protein targeting signals.

Authors:  Gisbert Schneider; Uli Fechner
Journal:  Proteomics       Date:  2004-06       Impact factor: 3.984

Review 2.  Designing antimicrobial peptides: form follows function.

Authors:  Christopher D Fjell; Jan A Hiss; Robert E W Hancock; Gisbert Schneider
Journal:  Nat Rev Drug Discov       Date:  2011-12-16       Impact factor: 84.694

3.  Isolation and sequence analysis of peptides from the venom of Protonectarina sylveirae (Hymenoptera-Vespidae).

Authors:  K Dohtsu; K Okumura; K Hagiwara; M S Palma; T Nakajima
Journal:  Nat Toxins       Date:  1993

4.  Identifying the macromolecular targets of de novo-designed chemical entities through self-organizing map consensus.

Authors:  Daniel Reker; Tiago Rodrigues; Petra Schneider; Gisbert Schneider
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-03       Impact factor: 11.205

5.  Hydramacin-1 in action: scrutinizing the barnacle model.

Authors:  Matthias Michalek; Bruno Vincent; Rainer Podschun; Joachim Grötzinger; Burkhard Bechinger; Sascha Jung
Journal:  Antimicrob Agents Chemother       Date:  2013-04-15       Impact factor: 5.191

Review 6.  Membrane lipids: where they are and how they behave.

Authors:  Gerrit van Meer; Dennis R Voelker; Gerald W Feigenson
Journal:  Nat Rev Mol Cell Biol       Date:  2008-02       Impact factor: 94.444

7.  Toward the de novo design of antimicrobial peptides: Lack of correlation between peptide permeabilization of lipid vesicles and antimicrobial, cytolytic, or cytotoxic activity in living cells.

Authors:  Jing He; Aram J Krauson; William C Wimley
Journal:  Biopolymers       Date:  2014-01       Impact factor: 2.505

8.  Atomic force microscopy of supported lipid bilayers.

Authors:  Marie-Paule Mingeot-Leclercq; Magali Deleu; Robert Brasseur; Yves F Dufrêne
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

9.  Peptide design by artificial neural networks and computer-based evolutionary search.

Authors:  G Schneider; W Schrödl; G Wallukat; J Müller; E Nissen; W Rönspeck; P Wrede; R Kunze
Journal:  Proc Natl Acad Sci U S A       Date:  1998-10-13       Impact factor: 11.205

10.  Chemically Advanced Template Search (CATS) for Scaffold-Hopping and Prospective Target Prediction for 'Orphan' Molecules.

Authors:  Michael Reutlinger; Christian P Koch; Daniel Reker; Nickolay Todoroff; Petra Schneider; Tiago Rodrigues; Gisbert Schneider
Journal:  Mol Inform       Date:  2013-02-07       Impact factor: 3.353

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  1 in total

1.  Attractors in Sequence Space: Peptide Morphing by Directed Simulated Evolution.

Authors:  Jan A Hiss; Katharina Stutz; Gernot Posselt; Silja Weßler; Gisbert Schneider
Journal:  Mol Inform       Date:  2015-08-20       Impact factor: 3.353

  1 in total

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