Literature DB >> 15145350

Recent highlights of RNA-polymerase-II-mediated transcription.

Robert J Sims1, Subhrangsu S Mandal, Danny Reinberg.   

Abstract

Considerable advances into the basis of RNA-polymerase-II-mediated transcriptional regulation have recently emerged. Biochemical, genetic and structural studies have contributed to novel insights into transcription, as well as the functional significance of covalent histone modifications. New details regarding transcription elongation through chromatin have further defined the mechanism behind this action, and identified how chromatin structure may be maintained after RNAP II traverses a nucleosome. ATP-dependent chromatin remodeling complexes, along with histone chaperone complexes, were recently discovered to facilitate histone exchange. In addition, it has become increasingly clear that transcription by RNA polymerase II extends beyond RNA synthesis, towards a more active role in mRNA maturation, surveillance and export to the cytoplasm.

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Year:  2004        PMID: 15145350     DOI: 10.1016/j.ceb.2004.04.004

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  78 in total

Review 1.  Transcriptional activators and activation mechanisms.

Authors:  Jun Ma
Journal:  Protein Cell       Date:  2011-12-17       Impact factor: 14.870

2.  The endoglycosidase heparanase enters the nucleus of T lymphocytes and modulates H3 methylation at actively transcribed genes via the interplay with key chromatin modifying enzymes.

Authors:  Yi Qing He; Elissa L Sutcliffe; Karen L Bunting; Jasmine Li; Katharine J Goodall; Ivan K A Poon; Mark D Hulett; Craig Freeman; Anjum Zafar; Russell L McInnes; Toshiki Taya; Christopher R Parish; Sudha Rao
Journal:  Transcription       Date:  2012 May-Jun

3.  Extensive cooperation of immune master regulators IRF3 and NFκB in RNA Pol II recruitment and pause release in human innate antiviral transcription.

Authors:  Jonathan E Freaney; Rebecca Kim; Roli Mandhana; Curt M Horvath
Journal:  Cell Rep       Date:  2013-08-29       Impact factor: 9.423

4.  CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription.

Authors:  Zhonghui Tang; Oscar Junhong Luo; Xingwang Li; Meizhen Zheng; Jacqueline Jufen Zhu; Przemyslaw Szalaj; Pawel Trzaskoma; Adriana Magalska; Jakub Wlodarczyk; Blazej Ruszczycki; Paul Michalski; Emaly Piecuch; Ping Wang; Danjuan Wang; Simon Zhongyuan Tian; May Penrad-Mobayed; Laurent M Sachs; Xiaoan Ruan; Chia-Lin Wei; Edison T Liu; Grzegorz M Wilczynski; Dariusz Plewczynski; Guoliang Li; Yijun Ruan
Journal:  Cell       Date:  2015-12-10       Impact factor: 41.582

5.  Dynamic histone modifications mark sex chromosome inactivation and reactivation during mammalian spermatogenesis.

Authors:  Ahmad M Khalil; Fatih Z Boyar; Daniel J Driscoll
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-09       Impact factor: 11.205

6.  Direct isolation and identification of promoters in the human genome.

Authors:  Tae Hoon Kim; Leah O Barrera; Chunxu Qu; Sara Van Calcar; Nathan D Trinklein; Sara J Cooper; Rosa M Luna; Christopher K Glass; Michael G Rosenfeld; Richard M Myers; Bing Ren
Journal:  Genome Res       Date:  2005-05-17       Impact factor: 9.043

7.  Drosophila Paf1 modulates chromatin structure at actively transcribed genes.

Authors:  Karen Adelman; Wenxiang Wei; M Behfar Ardehali; Janis Werner; Bing Zhu; Danny Reinberg; John T Lis
Journal:  Mol Cell Biol       Date:  2006-01       Impact factor: 4.272

Review 8.  Peptidyl-prolyl cis/trans isomerases and transcription: is there a twist in the tail?

Authors:  Peter E Shaw
Journal:  EMBO Rep       Date:  2007-01       Impact factor: 8.807

9.  Gene and genon concept: coding versus regulation. A conceptual and information-theoretic analysis of genetic storage and expression in the light of modern molecular biology.

Authors:  Klaus Scherrer; Jürgen Jost
Journal:  Theory Biosci       Date:  2007-09-22       Impact factor: 1.919

10.  Human histone chaperone nucleophosmin enhances acetylation-dependent chromatin transcription.

Authors:  V Swaminathan; A Hari Kishore; K K Febitha; Tapas K Kundu
Journal:  Mol Cell Biol       Date:  2005-09       Impact factor: 4.272

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