Literature DB >> 25197462

Draft genome sequence of Bacillus amyloliquefaciens HB-26.

Xiao-Yan Liu1, Yong Min1, Kai-Mei Wang1, Zhong-Yi Wan1, Zhi-Gang Zhang1, Chun-Xia Cao1, Rong-Hua Zhou1, Ai-Bing Jiang1, Cui-Jun Liu1, Guang-Yang Zhang1, Xian-Liang Cheng1, Wei Zhang2, Zi-Wen Yang1.   

Abstract

Bacillus amyloliquefaciens HB-26, a Gram-positive bacterium was isolated from soil in China. SDS-PAGE analysis showed this strain secreted six major protein bands of 65, 60, 55, 34, 25 and 20 kDa. A bioassay of this strain reveals that it shows specific activity against P. brassicae and nematode. Here we describe the features of this organism, together with the draft genome sequence and annotation. The 3,989,358 bp long genome (39 contigs) contains 4,001 protein-coding genes and 80 RNA genes.

Entities:  

Keywords:  Bacillus amyloliquefaciens HB-26; Plasmodiophora brassicae; The Next-Generation sequencing

Year:  2014        PMID： 25197462      PMCID： PMC4149015          DOI： 10.4056/sigs.4978673

Source DB:  PubMed          Journal:  Stand Genomic Sci        ISSN： 1944-3277


  25 in total

1.  Rfam: an RNA family database.

Authors:  Sam Griffiths-Jones; Alex Bateman; Mhairi Marshall; Ajay Khanna; Sean R Eddy
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

2.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  Fluorescent Amplified Fragment Length Polymorphism Analysis of Norwegian Bacillus cereus and Bacillus thuringiensis Soil Isolates.

Authors:  L O Ticknor; A B Kolstø; K K Hill; P Keim; M T Laker; M Tonks; P J Jackson
Journal:  Appl Environ Microbiol       Date:  2001-10       Impact factor: 4.792

Review 5.  Bacillus thuringiensis and its pesticidal crystal proteins.

Authors:  E Schnepf; N Crickmore; J Van Rie; D Lereclus; J Baum; J Feitelson; D R Zeigler; D H Dean
Journal:  Microbiol Mol Biol Rev       Date:  1998-09       Impact factor: 11.056

Review 6.  Biology and taxonomy of Bacillus cereus, Bacillus anthracis, and Bacillus thuringiensis.

Authors:  G T Vilas-Bôas; A P S Peruca; O M N Arantes
Journal:  Can J Microbiol       Date:  2007-06       Impact factor: 2.419

7.  Bacillus velezensis is a later heterotypic synonym of Bacillus amyloliquefaciens.

Authors:  Li-Ting Wang; Fwu-Ling Lee; Chun-Ju Tai; Hsiao-Ping Kuo
Journal:  Int J Syst Evol Microbiol       Date:  2008-03       Impact factor: 2.747

8.  Bacillus amyloliquefaciens GA1 as a source of potent antibiotics and other secondary metabolites for biocontrol of plant pathogens.

Authors:  Anthony Arguelles-Arias; Marc Ongena; Badre Halimi; Yannick Lara; Alain Brans; Bernard Joris; Patrick Fickers
Journal:  Microb Cell Fact       Date:  2009-11-26       Impact factor: 5.328

9.  A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure.

Authors:  Sean R Eddy
Journal:  BMC Bioinformatics       Date:  2002-07-02       Impact factor: 3.169

10.  Effects of Bacillus amyloliquefaciens FZB42 on lettuce growth and health under pathogen pressure and its impact on the rhizosphere bacterial community.

Authors:  Soumitra Paul Chowdhury; Kristin Dietel; Manuela Rändler; Michael Schmid; Helmut Junge; Rainer Borriss; Anton Hartmann; Rita Grosch
Journal:  PLoS One       Date:  2013-07-23       Impact factor: 3.240
View more
  3 in total

1.  Tolerance Induction of Temperature and Starvation with Tricalcium Phosphate on Preservation and Sporulation in Bacillus amyloliquefaciens Detected by Flow Cytometry.

Authors:  Samaneh Shahrokh Esfahani; Giti Emtiazi; Rasoul Shafiei; Najmeh Ghorbani; Seyed Hamid Zarkesh Esfahani
Journal:  Curr Microbiol       Date:  2016-06-01       Impact factor: 2.188

2.  Identification and characterization of putative effectors from Plasmodiophora brassicae that suppress or induce cell death in Nicotiana benthamiana.

Authors:  Zongxiang Zhan; Huishan Liu; Yao Yang; Shuang Liu; Xiaonan Li; Zhongyun Piao
Journal:  Front Plant Sci       Date:  2022-09-20       Impact factor: 6.627

Review 3.  A Review on the Biotechnological Applications of the Operational Group Bacillus amyloliquefaciens.

Authors:  Mohamad Syazwan Ngalimat; Radin Shafierul Radin Yahaya; Mohamad Malik Al-Adil Baharudin; Syafiqah Mohd Yaminudin; Murni Karim; Siti Aqlima Ahmad; Suriana Sabri
Journal:  Microorganisms       Date:  2021-03-17
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.