Literature DB >> 25184441

Surface packing determines the redox potential shift of cytochrome c adsorbed on gold.

Laura Zanetti-Polzi1, Isabella Daidone, Carlo Augusto Bortolotti, Stefano Corni.   

Abstract

Thermodynamic and dynamic properties of iso-1-cytochrome c covalently bound to a bare gold surface are here investigated by large scale atomistic simulations. The reduction potential of the protein for low and high surface concentrations is calculated showing a good agreement with experimental estimates. The origin of the dependence of the reduction potential on the surface concentration is investigated and is demonstrated to stem from the changing polarizability of the environment surrounding the protein, a mechanism reminiscent of crowding effects. Moreover, structural analyses are performed revealing relevant changes induced by the presence of the electrode on the dynamic properties of cytochrome c. In particular, one of the two cavities previously identified on the protein surface [Bortolotti et al. J. Am. Chem. Soc., 2012, 134, 13670], and that reversibly open in cytochrome c freely diffusing in solution, is found to be deformed when the protein is adsorbed on gold. This modification exemplifies a mechanism that potentially leads to changes in the protein properties by surface-induced modification of its dynamical behavior.

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Year:  2014        PMID: 25184441     DOI: 10.1021/ja505251a

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  6 in total

1.  Computational evidence support the hypothesis of neuroglobin also acting as an electron transfer species.

Authors:  Licia Paltrinieri; Giulia Di Rocco; Gianantonio Battistuzzi; Marco Borsari; Marco Sola; Antonio Ranieri; Laura Zanetti-Polzi; Isabella Daidone; Carlo Augusto Bortolotti
Journal:  J Biol Inorg Chem       Date:  2017-04-04       Impact factor: 3.358

2.  Binding of S. cerevisiae iso-1 cytochrome c and its surface lysine-to-alanine variants to cardiolipin: charge effects and the role of the lipid to protein ratio.

Authors:  Alessandro Paradisi; Marzia Bellei; Licia Paltrinieri; Carlo Augusto Bortolotti; Giulia Di Rocco; Antonio Ranieri; Marco Borsari; Marco Sola; Gianantonio Battistuzzi
Journal:  J Biol Inorg Chem       Date:  2020-03-18       Impact factor: 3.358

3.  Biomolecular Crowding Arising from Small Molecules, Molecular Constraints, Surface Packing, and Nano-Confinement.

Authors:  Mary Rose Hilaire; Rachel M Abaskharon; Feng Gai
Journal:  J Phys Chem Lett       Date:  2015-06-18       Impact factor: 6.475

Review 4.  Theoretical Modeling of Redox Potentials of Biomolecules.

Authors:  Cheng Giuseppe Chen; Alessandro Nicola Nardi; Andrea Amadei; Marco D'Abramo
Journal:  Molecules       Date:  2022-02-05       Impact factor: 4.411

5.  A quantitative connection of experimental and simulated folding landscapes by vibrational spectroscopy.

Authors:  Caitlin M Davis; Laura Zanetti-Polzi; Martin Gruebele; Andrea Amadei; R Brian Dyer; Isabella Daidone
Journal:  Chem Sci       Date:  2018-10-03       Impact factor: 9.825

6.  Tuning Proton Transfer Thermodynamics in SARS-Cov-2 Main Protease: Implications for Catalysis and Inhibitor Design.

Authors:  Laura Zanetti-Polzi; Micholas Dean Smith; Chris Chipot; James C Gumbart; Diane L Lynch; Anna Pavlova; Jeremy C Smith; Isabella Daidone
Journal:  ChemRxiv       Date:  2020-11-06
  6 in total

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