Literature DB >> 28378164

Computational evidence support the hypothesis of neuroglobin also acting as an electron transfer species.

Licia Paltrinieri1, Giulia Di Rocco1, Gianantonio Battistuzzi2, Marco Borsari2, Marco Sola1, Antonio Ranieri1, Laura Zanetti-Polzi3, Isabella Daidone4, Carlo Augusto Bortolotti5,6.   

Abstract

Neuroglobin (Ngb) is a recently identified hexa-coordinated globin, expressed in the nervous system of humans. Its physiological role is still debated: one hypothesis is that Ngb serves as an electron transfer (ET) species, possibly by reducing cytochrome c and preventing it to initiate the apoptotic cascade. Here, we use the perturbed matrix method (PMM), a mixed quantum mechanics/molecular dynamics approach, to investigate the redox thermodynamics of two neuroglobins, namely the human Ngb and GLB-6 from invertebrate Caenorhabditis elegans. In particular, we calculate the reduction potential of the two globins, resulting in an excellent agreement with the experimental values, and we predict the reorganization energies, λ, which have not been determined experimentally yet. The calculated λ values match well those reported for known ET proteins and thereby support a potential involvement in vivo of the two globins in ET processes.

Entities:  

Keywords:  Cytochrome c; Hexa-coordinated globins; Molecular dynamics simulation; Reduction potential; Reorganization energy; Thermodynamics

Mesh:

Substances:

Year:  2017        PMID: 28378164     DOI: 10.1007/s00775-017-1455-2

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  61 in total

1.  A unified model of protein dynamics.

Authors:  Hans Frauenfelder; Guo Chen; Joel Berendzen; Paul W Fenimore; Helén Jansson; Benjamin H McMahon; Izabela R Stroe; Jan Swenson; Robert D Young
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Review 2.  Development of bioinspired artificial photosynthetic systems.

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Journal:  Phys Chem Chem Phys       Date:  2008-03-06       Impact factor: 3.676

Review 3.  Electron transfer in proteins.

Authors:  H B Gray; J R Winkler
Journal:  Annu Rev Biochem       Date:  1996       Impact factor: 23.643

4.  Computation of methodology-independent single-ion solvation properties from molecular simulations. IV. Optimized Lennard-Jones interaction parameter sets for the alkali and halide ions in water.

Authors:  Maria M Reif; Philippe H Hünenberger
Journal:  J Chem Phys       Date:  2011-04-14       Impact factor: 3.488

5.  GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit.

Authors:  Sander Pronk; Szilárd Páll; Roland Schulz; Per Larsson; Pär Bjelkmar; Rossen Apostolov; Michael R Shirts; Jeremy C Smith; Peter M Kasson; David van der Spoel; Berk Hess; Erik Lindahl
Journal:  Bioinformatics       Date:  2013-02-13       Impact factor: 6.937

Review 6.  Function and evolution of vertebrate globins.

Authors:  T Burmester; T Hankeln
Journal:  Acta Physiol (Oxf)       Date:  2014-05-28       Impact factor: 6.311

7.  Biochemical characterization and ligand binding properties of neuroglobin, a novel member of the globin family.

Authors:  S Dewilde; L Kiger; T Burmester; T Hankeln; V Baudin-Creuza; T Aerts; M C Marden; R Caubergs; L Moens
Journal:  J Biol Chem       Date:  2001-07-25       Impact factor: 5.157

Review 8.  Structure-function relationships in the growing hexa-coordinate hemoglobin sub-family.

Authors:  Daniele de Sanctis; Alessandra Pesce; Marco Nardini; Martino Bolognesi; Alessio Bocedi; Paolo Ascenzi
Journal:  IUBMB Life       Date:  2004 Nov-Dec       Impact factor: 3.885

9.  What is the function of neuroglobin?

Authors:  Thorsten Burmester; Thomas Hankeln
Journal:  J Exp Biol       Date:  2009-05       Impact factor: 3.312

10.  Allosteric regulation and temperature dependence of oxygen binding in human neuroglobin and cytoglobin. Molecular mechanisms and physiological significance.

Authors:  Angela Fago; Christian Hundahl; Sylvia Dewilde; Kambiz Gilany; Luc Moens; Roy E Weber
Journal:  J Biol Chem       Date:  2004-08-06       Impact factor: 5.157

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  3 in total

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Journal:  Mol Neurobiol       Date:  2018-07-10       Impact factor: 5.590

2.  A quantitative connection of experimental and simulated folding landscapes by vibrational spectroscopy.

Authors:  Caitlin M Davis; Laura Zanetti-Polzi; Martin Gruebele; Andrea Amadei; R Brian Dyer; Isabella Daidone
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3.  Tuning Proton Transfer Thermodynamics in SARS-Cov-2 Main Protease: Implications for Catalysis and Inhibitor Design.

Authors:  Laura Zanetti-Polzi; Micholas Dean Smith; Chris Chipot; James C Gumbart; Diane L Lynch; Anna Pavlova; Jeremy C Smith; Isabella Daidone
Journal:  ChemRxiv       Date:  2020-11-06
  3 in total

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