Literature DB >> 25179600

Molecular probes to visualize the location, organization and dynamics of lipids.

Masashi Maekawa1, Gregory D Fairn2.   

Abstract

Cellular lipids play crucial roles in the cell, including in energy storage, the formation of cellular membranes, and in signaling and vesicular trafficking. To understand the functions and characteristics of lipids within cells, various methods to image lipids have been established. In this Commentary, we discuss the four main types of molecular probes that have significantly contributed to our understanding of the cell biology of lipids. In particular, genetically encoded biosensors and antibodies will be discussed, and how they have been used extensively with traditional light and electron microscopy to determine the subcellular localization of lipids and their spatial and temporal regulation. We highlight some of the recent studies that have investigated the distribution of lipids and their ability to cluster using super-resolution and electron microscopy. We also examine methods for analyzing the movement and dynamics of lipids, including single-particle tracking (SPT), fluorescence recovery after photobleaching (FRAP) and fluorescence correlation spectroscopy (FCS). Although the combination of these lipid probes and the various microscopic techniques is very powerful, we also point out several potential caveats and limitations. Finally, we discuss the need for new probes for a variety of phospholipids and cholesterol.
© 2014. Published by The Company of Biologists Ltd.

Entities:  

Keywords:  Electron microscopy; Imaging; Lipid; Super-resolution

Mesh:

Substances:

Year:  2014        PMID: 25179600     DOI: 10.1242/jcs.150524

Source DB:  PubMed          Journal:  J Cell Sci        ISSN: 0021-9533            Impact factor:   5.285


  35 in total

Review 1.  Quantifying lipid changes in various membrane compartments using lipid binding protein domains.

Authors:  Péter Várnai; Gergő Gulyás; Dániel J Tóth; Mira Sohn; Nivedita Sengupta; Tamas Balla
Journal:  Cell Calcium       Date:  2016-12-31       Impact factor: 6.817

2.  Membrane fluidity is regulated by the C. elegans transmembrane protein FLD-1 and its human homologs TLCD1/2.

Authors:  Mario Ruiz; Rakesh Bodhicharla; Emma Svensk; Ranjan Devkota; Kiran Busayavalasa; Henrik Palmgren; Marcus Ståhlman; Jan Boren; Marc Pilon
Journal:  Elife       Date:  2018-12-04       Impact factor: 8.140

3.  Quantification of Genetically Encoded Lipid Biosensors.

Authors:  Rachel C Wills; Jonathan Pacheco; Gerald R V Hammond
Journal:  Methods Mol Biol       Date:  2021

4.  Phosphatidylserine dictates the assembly and dynamics of caveolae in the plasma membrane.

Authors:  Takashi Hirama; Raibatak Das; Yanbo Yang; Charles Ferguson; Amy Won; Christopher M Yip; Jason G Kay; Sergio Grinstein; Robert G Parton; Gregory D Fairn
Journal:  J Biol Chem       Date:  2017-07-11       Impact factor: 5.157

Review 5.  Quantitative imaging of lipid droplets in single cells.

Authors:  Anushka Gupta; Gabriel F Dorlhiac; Aaron M Streets
Journal:  Analyst       Date:  2019-01-28       Impact factor: 4.616

Review 6.  Recent progress on lipid lateral heterogeneity in plasma membranes: From rafts to submicrometric domains.

Authors:  Mélanie Carquin; Ludovic D'Auria; Hélène Pollet; Ernesto R Bongarzone; Donatienne Tyteca
Journal:  Prog Lipid Res       Date:  2015-12-29       Impact factor: 16.195

Review 7.  Phosphatidylinositol 3-phosphates-at the interface between cell signalling and membrane traffic.

Authors:  Andrea L Marat; Volker Haucke
Journal:  EMBO J       Date:  2016-02-17       Impact factor: 11.598

8.  Investigation of the biophysical properties of a fluorescently modified ceramide-1-phosphate.

Authors:  Carolyn M Shirey; Katherine E Ward; Robert V Stahelin
Journal:  Chem Phys Lipids       Date:  2016-06-16       Impact factor: 3.329

9.  Monitoring Phosphatidic Acid Signaling in Breast Cancer Cells Using Genetically Encoded Biosensors.

Authors:  Maryia Lu; Li Wei Rachel Tay; Jingquan He; Guangwei Du
Journal:  Methods Mol Biol       Date:  2016

10.  CHIMs are versatile cholesterol analogs mimicking and visualizing cholesterol behavior in lipid bilayers and cells.

Authors:  Anna L L Matos; Fabian Keller; Tristan Wegner; Carla Elizabeth Cadena Del Castillo; David Grill; Sergej Kudruk; Anne Spang; Frank Glorius; Andreas Heuer; Volker Gerke
Journal:  Commun Biol       Date:  2021-06-11
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