Literature DB >> 25166868

Improved reproducibility by assuring confidence in measurements in biomedical research.

Anne L Plant1, Laurie E Locascio2, Willie E May3, Patrick D Gallagher4.   

Abstract

‘Irreproducibility’ is symptomatic of a broader challenge in measurement in biomedical research. From the US National Institute of Standards and Technology (NIST) perspective of rigorous metrology, reproducibility is only one aspect of establishing confidence in measurements. Appropriate controls, reference materials, statistics and informatics are required for a robust measurement process. Research is required to establish these tools for biological measurements, which will lead to greater confidence in research results.

Mesh:

Year:  2014        PMID: 25166868     DOI: 10.1038/nmeth.3076

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  22 in total

1.  Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.

Authors:  A Brazma; P Hingamp; J Quackenbush; G Sherlock; P Spellman; C Stoeckert; J Aach; W Ansorge; C A Ball; H C Causton; T Gaasterland; P Glenisson; F C Holstege; I F Kim; V Markowitz; J C Matese; H Parkinson; A Robinson; U Sarkans; S Schulze-Kremer; J Stewart; R Taylor; J Vilo; M Vingron
Journal:  Nat Genet       Date:  2001-12       Impact factor: 38.330

2.  Human CD4+ lymphocytes for antigen quantification: characterization using conventional flow cytometry and mass cytometry.

Authors:  Lili Wang; Fatima Abbasi; Olga Ornatsky; Kenneth D Cole; Martin Misakian; Adolfas K Gaigalas; Hua-Jun He; Gerald E Marti; Scott Tanner; Richard Stebbings
Journal:  Cytometry A       Date:  2012-04-26       Impact factor: 4.355

3.  Drug development: Raise standards for preclinical cancer research.

Authors:  C Glenn Begley; Lee M Ellis
Journal:  Nature       Date:  2012-03-28       Impact factor: 49.962

4.  Discrepancy in measuring CD4 expression on T-lymphocytes using fluorescein conjugates in comparison with unimolar CD4-phycoerythrin conjugates.

Authors:  Lili Wang; Fatima Abbasi; Adolfas K Gaigalas; Robert A Hoffman; Dan Flagler; G E Marti
Journal:  Cytometry B Clin Cytom       Date:  2007-11       Impact factor: 3.058

Review 5.  The costs of using unauthenticated, over-passaged cell lines: how much more data do we need?

Authors:  Peyton Hughes; Damian Marshall; Yvonne Reid; Helen Parkes; Cohava Gelber
Journal:  Biotechniques       Date:  2007-11       Impact factor: 1.993

6.  Comparison of segmentation algorithms for fluorescence microscopy images of cells.

Authors:  Alden A Dima; John T Elliott; James J Filliben; Michael Halter; Adele Peskin; Javier Bernal; Marcin Kociolek; Mary C Brady; Hai C Tang; Anne L Plant
Journal:  Cytometry A       Date:  2011-06-14       Impact factor: 4.355

7.  New concepts for building vocabulary for cell image ontologies.

Authors:  Anne L Plant; John T Elliott; Talapady N Bhat
Journal:  BMC Bioinformatics       Date:  2011-12-21       Impact factor: 3.169

8.  Mouse cell line authentication.

Authors:  Jamie L Almeida; Carolyn R Hill; Kenneth D Cole
Journal:  Cytotechnology       Date:  2013-02-22       Impact factor: 2.058

9.  Bayesian approach to single-cell differential expression analysis.

Authors:  Peter V Kharchenko; Lev Silberstein; David T Scadden
Journal:  Nat Methods       Date:  2014-05-18       Impact factor: 28.547

10.  Quantifying myosin light chain phosphorylation in single adherent cells with automated fluorescence microscopy.

Authors:  Kiran Bhadriraju; John T Elliott; My Nguyen; Anne L Plant
Journal:  BMC Cell Biol       Date:  2007-10-17       Impact factor: 4.241

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  23 in total

1.  Metrology is key to reproducing results.

Authors:  Martyn Sené; Ian Gilmore; Jan-Theodoor Janssen
Journal:  Nature       Date:  2017-07-25       Impact factor: 49.962

2.  A Practical Approach to Quantitative Processing and Analysis of Small Biological Structures by Fluorescent Imaging.

Authors:  Crystal M Noller; Maria Boulina; George McNamara; Angela Szeto; Philip M McCabe; Armando J Mendez
Journal:  J Biomol Tech       Date:  2016-05-13

3.  Strategies for robust and accurate experimental approaches to quantify nanomaterial bioaccumulation across a broad range of organisms.

Authors:  Elijah J Petersen; Monika Mortimer; Robert M Burgess; Richard Handy; Shannon Hanna; Kay T Ho; Monique Johnson; Susana Loureiro; Henriette Selck; Janeck J Scott-Fordsmand; David Spurgeon; Jason Unrine; Nico van den Brink; Ying Wang; Jason White; Patricia Holden
Journal:  Environ Sci Nano       Date:  2019

4.  Analysis and uncertainty quantification of DNA fluorescence melt data: Applications of affine transformations.

Authors:  Paul N Patrone; Anthony J Kearsley; Jacob M Majikes; J Alexander Liddle
Journal:  Anal Biochem       Date:  2020-06-08       Impact factor: 3.365

5.  Standards for Cell Line Authentication and Beyond.

Authors:  Jamie L Almeida; Kenneth D Cole; Anne L Plant
Journal:  PLoS Biol       Date:  2016-06-14       Impact factor: 8.029

6.  Authentication: A Standard Problem or a Problem of Standards?

Authors:  Amanda Capes-Davis; Richard M Neve
Journal:  PLoS Biol       Date:  2016-06-14       Impact factor: 8.029

7.  Propelling the paradigm shift from reductionism to systems nutrition.

Authors:  Jim Kaput; Giuditta Perozzi; Marijana Radonjic; Fabio Virgili
Journal:  Genes Nutr       Date:  2017-01-25       Impact factor: 5.523

8.  Bon-EV: an improved multiple testing procedure for controlling false discovery rates.

Authors:  Dongmei Li; Zidian Xie; Martin Zand; Thomas Fogg; Timothy Dye
Journal:  BMC Bioinformatics       Date:  2017-01-03       Impact factor: 3.169

9.  The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism.

Authors:  Garrett W Birkel; Amit Ghosh; Vinay S Kumar; Daniel Weaver; David Ando; Tyler W H Backman; Adam P Arkin; Jay D Keasling; Héctor García Martín
Journal:  BMC Bioinformatics       Date:  2017-04-05       Impact factor: 3.169

10.  Counting Caenorhabditis elegans: Protocol Optimization and Applications for Population Growth and Toxicity Studies in Liquid Medium.

Authors:  Leona D Scanlan; Steven P Lund; Sanem Hosbas Coskun; Shannon K Hanna; Monique E Johnson; Christopher M Sims; Karina Brignoni; Patricia Lapasset; Elijah J Petersen; John T Elliott; Bryant C Nelson
Journal:  Sci Rep       Date:  2018-01-17       Impact factor: 4.379

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