Literature DB >> 25164811

Biochemical characterization and crystal structures of a fungal family 3 β-glucosidase, Cel3A from Hypocrea jecorina.

Saeid Karkehabadi1, Kate E Helmich2, Thijs Kaper3, Henrik Hansson1, Nils-Egil Mikkelsen1, Mikael Gudmundsson1, Kathleen Piens1, Meredith Fujdala3, Goutami Banerjee4, John S Scott-Craig4, Jonathan D Walton4, George N Phillips5, Mats Sandgren6.   

Abstract

Cellulase mixtures from Hypocrea jecorina are commonly used for the saccharification of cellulose in biotechnical applications. The most abundant β-glucosidase in the mesophilic fungus Hypocrea jecorina is HjCel3A, which hydrolyzes the β-linkage between two adjacent molecules in dimers and short oligomers of glucose. It has been shown that enhanced levels of HjCel3A in H. jecorina cellulase mixtures benefit the conversion of cellulose to glucose. Biochemical characterization of HjCel3A shows that the enzyme efficiently hydrolyzes (1,4)- as well as (1,2)-, (1,3)-, and (1,6)-β-D-linked disaccharides. For crystallization studies, HjCel3A was produced in both H. jecorina (HjCel3A) and Pichia pastoris (Pp-HjCel3A). Whereas the thermostabilities of HjCel3A and Pp-HjCel3A are the same, Pp-HjCel3A has a higher degree of N-linked glycosylation. Here, we present x-ray structures of HjCel3A with and without glucose bound in the active site. The structures have a three-domain architecture as observed previously for other glycoside hydrolase family 3 β-glucosidases. Both production hosts resulted in HjCel3A structures that have N-linked glycosylations at Asn(208) and Asn(310). In H. jecorina-produced HjCel3A, a single N-acetylglucosamine is present at both sites, whereas in Pp-HjCel3A, the P. pastoris-produced HjCel3A enzyme, the glycan chains consist of 8 or 4 saccharides. The glycosylations are involved in intermolecular contacts in the structures derived from either host. Due to the different sizes of the glycosylations, the interactions result in different crystal forms for the two protein forms.
© 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  Biofuel; Biomass Conversion; Crystal Structure; Enzyme Structure; Glycoside Hydrolase; Hypocrea jecorina; beta-Glucosidase

Mesh:

Substances:

Year:  2014        PMID: 25164811      PMCID: PMC4223358          DOI: 10.1074/jbc.M114.587766

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  61 in total

1.  Influence of enzyme loading and physical parameters on the enzymatic hydrolysis of steam-pretreated softwood.

Authors:  C Tengborg; M Galbe; G Zacchi
Journal:  Biotechnol Prog       Date:  2001 Jan-Feb

2.  Molecular hinges in protein folding: the urea-denatured state of apomyoglobin.

Authors:  Stephan Schwarzinger; Peter E Wright; H Jane Dyson
Journal:  Biochemistry       Date:  2002-10-22       Impact factor: 3.162

3.  PHENIX: building new software for automated crystallographic structure determination.

Authors:  Paul D Adams; Ralf W Grosse-Kunstleve; Li Wei Hung; Thomas R Ioerger; Airlie J McCoy; Nigel W Moriarty; Randy J Read; James C Sacchettini; Nicholas K Sauter; Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-10-21

4.  High-throughput structure determination. Proceedings of the 2002 CCP4 (Collaborative Computational Project in Macromolecular Crystallography) study weekend. January, 2002. York, United Kingdom.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-11

Review 5.  Microbial cellulose utilization: fundamentals and biotechnology.

Authors:  Lee R Lynd; Paul J Weimer; Willem H van Zyl; Isak S Pretorius
Journal:  Microbiol Mol Biol Rev       Date:  2002-09       Impact factor: 11.056

6.  Structural basis for broad substrate specificity in higher plant beta-D-glucan glucohydrolases.

Authors:  Maria Hrmova; Ross De Gori; Brian J Smith; Jon K Fairweather; Hugues Driguez; Joseph N Varghese; Geoffrey B Fincher
Journal:  Plant Cell       Date:  2002-05       Impact factor: 11.277

7.  Three-dimensional structure of a barley beta-D-glucan exohydrolase, a family 3 glycosyl hydrolase.

Authors:  J N Varghese; M Hrmova; G B Fincher
Journal:  Structure       Date:  1999-02-15       Impact factor: 5.006

8.  Three-dimensional structure of the barley beta-D-glucan glucohydrolase in complex with a transition state mimic.

Authors:  Maria Hrmova; Ross De Gori; Brian J Smith; Andrea Vasella; Joseph N Varghese; Geoffrey B Fincher
Journal:  J Biol Chem       Date:  2003-11-03       Impact factor: 5.157

9.  Transcriptional regulation of biomass-degrading enzymes in the filamentous fungus Trichoderma reesei.

Authors:  Pamela K Foreman; Doug Brown; Lydia Dankmeyer; Ralph Dean; Stephen Diener; Nigel S Dunn-Coleman; Frits Goedegebuur; Thomas D Houfek; George J England; Aaron S Kelley; Hendrik J Meerman; Thomas Mitchell; Colin Mitchinson; Heather A Olivares; Pauline J M Teunissen; Jian Yao; Michael Ward
Journal:  J Biol Chem       Date:  2003-06-04       Impact factor: 5.157

10.  Cloning and amplification of the gene encoding an extracellular beta-glucosidase from Trichoderma reesei: evidence for improved rates of saccharification of cellulosic substrates.

Authors:  C C Barnett; R M Berka; T Fowler
Journal:  Biotechnology (N Y)       Date:  1991-06
View more
  28 in total

1.  A Novel Three Domains Glycoside Hydrolase Family 3 from Sclerotinia sclerotiorum Exhibits β-Glucosidase and Exoglucanase Activities: Molecular, Biochemical, and Transglycosylation Potential Analysis.

Authors:  Haifa Chahed; Aymen Ezzine; Mohamed Amine Ben Mlouka; Christophe Rihouey; Julie Hardouin; Thierry Jouenne; M Nejib Marzouki
Journal:  Mol Biotechnol       Date:  2015-12       Impact factor: 2.695

2.  Kinetic and molecular dynamics study of inhibition and transglycosylation in Hypocrea jecorina family 3 β-glucosidases.

Authors:  Inacrist Geronimo; Patricia Ntarima; Kathleen Piens; Mikael Gudmundsson; Henrik Hansson; Mats Sandgren; Christina M Payne
Journal:  J Biol Chem       Date:  2019-01-02       Impact factor: 5.157

3.  A Versatile Family 3 Glycoside Hydrolase from Bifidobacterium adolescentis Hydrolyzes β-Glucosides of the Fusarium Mycotoxins Deoxynivalenol, Nivalenol, and HT-2 Toxin in Cereal Matrices.

Authors:  Herbert Michlmayr; Elisabeth Varga; Alexandra Malachova; Nhung Thi Nguyen; Cindy Lorenz; Dietmar Haltrich; Franz Berthiller; Gerhard Adam
Journal:  Appl Environ Microbiol       Date:  2015-05-15       Impact factor: 4.792

4.  Synergies in coupled hydrolysis and fermentation of cellulose using a Trichoderma reesei enzyme preparation and a recombinant Saccharomyces cerevisiae strain.

Authors:  Mary Casa-Villegas; Julia Marín-Navarro; Julio Polaina
Journal:  World J Microbiol Biotechnol       Date:  2017-06-06       Impact factor: 3.312

Review 5.  Enzymatic degradation of xyloglucans by Aspergillus species: a comparative view of this genus.

Authors:  Tomohiko Matsuzawa; Akira Watanabe; Takahiro Shintani; Katsuya Gomi; Katsuro Yaoi
Journal:  Appl Microbiol Biotechnol       Date:  2021-03-24       Impact factor: 4.813

6.  High-resolution structure of a lytic polysaccharide monooxygenase from Hypocrea jecorina reveals a predicted linker as an integral part of the catalytic domain.

Authors:  Henrik Hansson; Saeid Karkehabadi; Nils Mikkelsen; Nicholai R Douglas; Steve Kim; Anna Lam; Thijs Kaper; Brad Kelemen; Katlyn K Meier; Stephen M Jones; Edward I Solomon; Mats Sandgren
Journal:  J Biol Chem       Date:  2017-09-12       Impact factor: 5.157

7.  Functional diversity of family 3 β-glucosidases from thermophilic cellulolytic fungus Humicola insolens Y1.

Authors:  Wei Xia; Yingguo Bai; Ying Cui; Xinxin Xu; Lichun Qian; Pengjun Shi; Wei Zhang; Huiying Luo; Xiuan Zhan; Bin Yao
Journal:  Sci Rep       Date:  2016-06-08       Impact factor: 4.379

8.  Molecular Mechanism by which Prominent Human Gut Bacteroidetes Utilize Mixed-Linkage Beta-Glucans, Major Health-Promoting Cereal Polysaccharides.

Authors:  Kazune Tamura; Glyn R Hemsworth; Guillaume Déjean; Theresa E Rogers; Nicholas A Pudlo; Karthik Urs; Namrata Jain; Gideon J Davies; Eric C Martens; Harry Brumer
Journal:  Cell Rep       Date:  2017-10-10       Impact factor: 9.423

9.  Exploring glycoside hydrolases and accessory proteins from wood decay fungi to enhance sugarcane bagasse saccharification.

Authors:  Fernanda Valadares; Thiago A Gonçalves; Dayelle S P O Gonçalves; Fernando Segato; Elisson Romanel; Adriane M F Milagres; Fabio M Squina; André Ferraz
Journal:  Biotechnol Biofuels       Date:  2016-05-23       Impact factor: 6.040

10.  Structural dissection of a complex Bacteroides ovatus gene locus conferring xyloglucan metabolism in the human gut.

Authors:  Glyn R Hemsworth; Andrew J Thompson; Judith Stepper; Łukasz F Sobala; Travis Coyle; Johan Larsbrink; Oliver Spadiut; Ethan D Goddard-Borger; Keith A Stubbs; Harry Brumer; Gideon J Davies
Journal:  Open Biol       Date:  2016-07       Impact factor: 6.411

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.