Literature DB >> 25156651

Cold-active bacteriophages from the Baltic Sea ice have diverse genomes and virus-host interactions.

Ana Senčilo1,2, Anne-Mari Luhtanen1,3,4, Mikko Saarijärvi1, Dennis H Bamford1,2, Elina Roine1,2.   

Abstract

Heterotrophic bacteria are the major prokaryotic component of the Baltic Sea ice microbiome, and it is postulated that phages are among their major parasites. In this study, we sequenced the complete genomes of six earlier reported phage isolates from the Baltic Sea ice infecting Shewanella sp. and Flavobacterium sp. hosts as well as characterized the phage-host interactions. Based on the genome sequences, the six phages were classified into five new genera. Only two phages, 1/4 and 1/40, both infecting Shewanella sp. strains, showed significant nucleotide sequence similarity to each other and could be grouped into the same genus. These two phages are also related to Vibrio-specific phages sharing approximately 25% of the predicted gene products. Nevertheless, cross-titrations showed that the cold-active phages studied are host specific: none of the seven additionally tested, closely related Shewanella strains served as hosts for the phages. Adsorption experiments of two Shewanella phages, 1/4 and 3/49, conducted at 4 °C and at 15 °C revealed relatively fast adsorption rates that are, for example, comparable with those of phages infective in mesophilic conditions. Despite the small number of Shewanella phages characterized here, we could already find different types of phage-host interactions including a putative abortive infection.
© 2014 Society for Applied Microbiology and John Wiley & Sons Ltd.

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Year:  2014        PMID: 25156651     DOI: 10.1111/1462-2920.12611

Source DB:  PubMed          Journal:  Environ Microbiol        ISSN: 1462-2912            Impact factor:   5.491


  12 in total

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2.  Isolation and Complete Genome Sequence of a Novel Pseudoalteromonas Phage PH357 from the Yangtze River Estuary.

Authors:  Zheng Gong; Min Wang; Qingwei Yang; Zhongshi Li; Jun Xia; Yu Gao; Yong Jiang; Xue Meng; Zhaoyang Liu; Ding Yang; Fangfei Zhang; Hongbing Shao; Duobing Wang
Journal:  Curr Microbiol       Date:  2017-04-20       Impact factor: 2.188

3.  Isolation and Complete Genome of the Marine Pseudoalteromonas Phage C7 from Coastal Seawater of Yellow Sea, China.

Authors:  Qi Wang; Yundan Liu; Qian Liu; Xinxin Liu; Fan Yang; Min Wang; Hongbing Shao; Yong Jiang
Journal:  Curr Microbiol       Date:  2019-11-23       Impact factor: 2.188

4.  Virus-Host Interactions and Genetic Diversity of Antarctic Sea Ice Bacteriophages.

Authors:  Tatiana A Demina; Anne-Mari Luhtanen; Simon Roux; Hanna M Oksanen
Journal:  mBio       Date:  2022-05-09       Impact factor: 7.786

5.  Environmental Viral Genomes Shed New Light on Virus-Host Interactions in the Ocean.

Authors:  Yosuke Nishimura; Hiroyasu Watai; Takashi Honda; Tomoko Mihara; Kimiho Omae; Simon Roux; Romain Blanc-Mathieu; Keigo Yamamoto; Pascal Hingamp; Yoshihiko Sako; Matthew B Sullivan; Susumu Goto; Hiroyuki Ogata; Takashi Yoshida
Journal:  mSphere       Date:  2017-03-01       Impact factor: 4.389

6.  The Baltic Sea Virome: Diversity and Transcriptional Activity of DNA and RNA Viruses.

Authors:  Lisa Zeigler Allen; John P McCrow; Karolina Ininbergs; Christopher L Dupont; Jonathan H Badger; Jeffery M Hoffman; Martin Ekman; Andrew E Allen; Birgitta Bergman; J Craig Venter
Journal:  mSystems       Date:  2017-02-14       Impact factor: 6.496

Review 7.  Viruses of Polar Aquatic Environments.

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Journal:  Viruses       Date:  2019-02-22       Impact factor: 5.048

8.  Classifying the Unclassified: A Phage Classification Method.

Authors:  Cynthia Maria Chibani; Anton Farr; Sandra Klama; Sascha Dietrich; Heiko Liesegang
Journal:  Viruses       Date:  2019-02-24       Impact factor: 5.048

Review 9.  An Appraisal of Bacteriophage Isolation Techniques from Environment.

Authors:  Aparna Nair; Gaurav S Ghugare; Krishna Khairnar
Journal:  Microb Ecol       Date:  2021-06-17       Impact factor: 4.552

10.  Genomic Characterization of Cyanophage vB_AphaS-CL131 Infecting Filamentous Diazotrophic Cyanobacterium Aphanizomenon flos-aquae Reveals Novel Insights into Virus-Bacterium Interactions.

Authors:  Sigitas Šulčius; Eugenijus Šimoliūnas; Gediminas Alzbutas; Giedrius Gasiūnas; Vykintas Jauniškis; Jolita Kuznecova; Sini Miettinen; Emelie Nilsson; Rolandas Meškys; Elina Roine; Ričardas Paškauskas; Karin Holmfeldt
Journal:  Appl Environ Microbiol       Date:  2018-12-13       Impact factor: 4.792

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